Lcy12g010240 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g010240
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	B-like cyclin
Location	Chr12: 37489668 .. 37492746 (-)
RNA-Seq Expression	Lcy12g010240
Synteny	Lcy12g010240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGCCCCCACCTTCTCTTTCTTCTTCTCCCCGCCGCCGGATCTCCTCCCCGTCGCCGCCGGAATTTCAAACTCATCCGACCGTTGTGAGAGAAGCGTCAGGTCTGTAGCTTCAAAAGGGCCATTGCTTCTCTTAGCGTGAGAGAGAGACCTCAAGAAGACTTTCAGAAAGAAGAAGAAAAAGAACAAAAAAAAAAAAAAAGGGTTTCGATTGTTGGTTTCTCTCTGTCTTTTTGAAGATTTCAACAATGGCTTCAAGACCAGTTGTTCCCCAACAAATCAGAGGTACAAGAAATTTCCCCTCTAAAATTTCCCTCTTCTTTTTTCTGGGTTTCTTCTGAAATTTTATATCTGACTGGTGTATCGTGTTGATTCGAACCCCAAATCGCTTCTAATACAAAGATTTATGCCTTGTTCTGTACTTCCCATTCTGTTATTTTGTGTGCATGTTTTGATTTGTTTGTGTGTTTTCATTTGGAAGATCTGTAATTTGTGTTGTTGGGTTGGATTCTCTGTTGCATTTTAGTTAAGTGAGGATTGAGGAAGTCTCTGGCTCAATTTTTGGTGTCTTGTTCTTTCCGTTTTCTTTCTGTTTCTTGTGTTGAATGGGGTGTTTTAAATGGCGTAAGGTGAGGCAGCGATCGGCGGAGGAAAGCAGGCGAAAGCCGAGGCGACGGTGGATGCGAGGAACCTTCGAGCATTGGGCGATATTGGGAATCTGGTAACTGTTCGAGGAGCTCCGGCGGCGACGGGGAGGAGATTCGGCGGGGAGAAGAAGAAAGAGAAGGTGGGGGCGGCGGGGAGAGAAGAGAGGGAAGGTGGGAAAGAGGAGAGAGAGAAAGTTTTTTTTAATAATAATAATAATTTTTATTATTTTTATTATTATTATTATATTTTAATAATAATAATTATTATTATTATTATTTTATTATTATATTATTATTATTTTAATTAAAAATCAATATTTTATTATTTTAAACTGCCACGTCAGCCCTAGAGGGACTCAATAGAAACATTTCCGGAACAGTAGGGACTCGATTGTCCGATTTTGAAACGTAAGGACCTATTAGAAACTAACTCGAAACATGAGGGACCAAAAATGTATTTTACCCTAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATCCTTATTATTATTTTTATAAGTTATTTAACAAAACTCTAGCACAAATGGCACAATCACATCTTTTGTACGTTTATTTATCTAATGTCTATCAAGTAATATTTTTAGACCATGTCTAATTGGTTAGACCTCGTTTGACAACCATTTTATTTCTTGTTTTTTGTTTTTGAAAATTAAGCTTGTTATAGGCAATTTTGGACCACCCCGATGTACAAGGAGCTGACGAGGACAACCGGGGAAAAATCGGGCTGGGAGATAGACCCAAGAGGCGAAACCGACAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGCTTTTGGCCCGACCCCCTGCTCGGCCTCGGCCCAAGGCCCAGGCCCAGGCTCATGGTGGGCCGAGGCCGAGCCCGTCCGGCTCCGTTTGGTCCCTTCCGCCTCTGGCCTCCCTGGTTCCGCCTGGTTTGTCCCGAAATGCCTCCGAATTCCTAAAAACCCTAGGAGCATGAGCAGGTATTTATACCCCTCTTCGCTAGTGAAGAAGGGGACCCGAACTCTCGACTCTCTCCTCTTGCTCTCTAGCTATTCCCTCCGTTTTTTGACTTAAGCATCGGAGACGGTGTGGCTAGCACCACACCGGTGTGCATGTTTACTCTTTTGCAGGCCACGTCTTCCCCCGTTCTCAAACAAATTCACTGTCGATTATCACGTGGAGCGAAGGTAATTTACATAGCGAAATTTGAAAATCAACAAAGCTTATAAATAACACTTTCATCTTTGTTATGTTATCTACCTTCTTCTTATGTTTTTAAAAATCAAGTTAAGTTTTGAAAACTAAAAAAAATAGTTTTCAAAAGAAAAACTTGTTTTGGAATTTAGCTAAAAACTCTAATGTTTCATGAACAAAAATGAAAATCATTGTAATGAAATTGGAAGAAAACAAGCATAATTTTTAAAAATCAAATAGTTATCAAATGGGTAGAAGATATCAAATATCAAAATACATATAAATTTTTATTAAATTATAAATGAAGATGACAATAACTAACATAGATTTTTATTTAAATTTTTTCTTACTTTTGAGTTCAAGAGCATTTGGGATGGAGGATTTGAATCTCTGACCTCTTGATTGAGGGTGCATGTCAATTACTGCTGAGCTATGCTCACTTTGGAAAAAAAAATGCAATTGATAACATGTTTGATATTTATGTTATTTGTTTTGAACTCCAACCACAAATAACTTATCATATTTAGGGATGTCCACATCACGAAGGAGGATGAGATGGCTTCTGTGTCTCCGTCGCCACCCCCATTTTAAACACCATCCTTGCAAATTTCATGTTAAATTTTATGGAAATCGGGATGGAGATTCCCTTTAGAGAATTGGTAGGGATCGGGATCTCCACAAAGAATTATTCTCCCGTTTAATTTTTTTTAATCACAATGGAAGCAAATGATCCTTTTCAAATAGTTATCTTTCCATGGAAAATATCCATTAATTTTCAATTAGATAGTTAATTATTCACATAAAATCTTTATTTAAATAGTTAATTTTCTACTAAAAAAAATCTCTATGTATGGATAAAAATCTTTTTTTTTTTGAGCAATAGAACGCATCGACCTTCCATACCACCAAGAGAACCGCTCAGAGAGCAACAATACAACGATAAATCCGATAAAACTACACCCTCCACACACGGAGGGTCAGCCTCAAAAGAATAGAGCAAACACCACCCATTATGGTGCACTCTCCCCCTTACGTAATCACGTGTCCCAATCTAAATAAACAACCATATGCTTCCATCTGCAATTCAGCCGCCTTCAAGCTCCTCAAAACACTCCACACCAAGCCACTTTGAGCAGCATGGGCATCAACCAACTGTTATGCAGCACTCCTCCCCACAAGACATGTGCCCCCAATAA

mRNA sequence

CCGCCCCCACCTTCTCTTTCTTCTTCTCCCCGCCGCCGGATCTCCTCCCCGTCGCCGCCGGAATTTCAAACTCATCCGACCGTTGTGAGAGAAGCGTCAGGTCTGTAGCTTCAAAAGGGCCATTGCTTCTCTTAGCGTGAGAGAGAGACCTCAAGAAGACTTTCAGAAAGAAGAAGAAAAAGAACAAAAAAAAAAAAAAAGGGTTTCGATTGTTGGTTTCTCTCTGTCTTTTTGAAGATTTCAACAATGGCTTCAAGACCAGTTGTTCCCCAACAAATCAGAGGTGAGGCAGCGATCGGCGGAGGAAAGCAGGCGAAAGCCGAGGCGACGGTGGATGCGAGGAACCTTCGAGCATTGGGCGATATTGGGAATCTGGTAACTGTTCGAGGAGCTCCGGCGGCGACGGGGAGGAGATTCGGCGGGGAGAAGAAGAAAGAGAAGCCGCCTTCAAGCTCCTCAAAACACTCCACACCAAGCCACTTTGAGCAGCATGGGCATCAACCAACTGTTATGCAGCACTCCTCCCCACAAGACATGTGCCCCCAATAA

Coding sequence (CDS)

ATGGCTTCAAGACCAGTTGTTCCCCAACAAATCAGAGGTGAGGCAGCGATCGGCGGAGGAAAGCAGGCGAAAGCCGAGGCGACGGTGGATGCGAGGAACCTTCGAGCATTGGGCGATATTGGGAATCTGGTAACTGTTCGAGGAGCTCCGGCGGCGACGGGGAGGAGATTCGGCGGGGAGAAGAAGAAAGAGAAGCCGCCTTCAAGCTCCTCAAAACACTCCACACCAAGCCACTTTGAGCAGCATGGGCATCAACCAACTGTTATGCAGCACTCCTCCCCACAAGACATGTGCCCCCAATAA

Protein sequence

MASRPVVPQQIRGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRGAPAATGRRFGGEKKKEKPPSSSSKHSTPSHFEQHGHQPTVMQHSSPQDMCPQ

Homology

[Close]

BLAST of Lcy12g010240 vs. ExPASy Swiss-Prot
Match: P25011 (G2/mitotic-specific cyclin S13-6 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.8e-09
Identity = 33/56 (58.93%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 1  MASRPVVPQQIRGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRGAPAATGRR 57
          MASR V  QQ RGEA +GGGKQ K     D RN +ALGDIGNL  VRG   A   R
Sbjct: 1  MASRIVQQQQARGEAVVGGGKQQKKNGVADGRNRKALGDIGNLANVRGVVDAKPNR 56

[Close]

BLAST of Lcy12g010240 vs. ExPASy Swiss-Prot
Match: P34800 (G2/mitotic-specific cyclin-1 OS=Antirrhinum majus OX=4151 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.5e-04
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 1  MASRPVVPQQIRGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRG 49
          M SR +V QQ R EAA+ G  + K  A  + +N RALGDIGNLVTVRG
Sbjct: 1  MGSRNIVQQQNRAEAAVPGAMKQKNIAG-EKKNRRALGDIGNLVTVRG 47

[Close]

BLAST of Lcy12g010240 vs. ExPASy TrEMBL
Match: A0A6J1HNH5 (B-like cyclin OS=Cucurbita maxima OX=3661 GN=LOC111465899 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.0e-13
Identity = 44/55 (80.00%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1  MASRPVVPQQIRGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRGAPAATGR 56
          MA+RPVVPQQIRGEAAIGGGKQ K  A VDARN RALGDIGNLVTVRG  A   R
Sbjct: 1  MATRPVVPQQIRGEAAIGGGKQGKGGAAVDARNRRALGDIGNLVTVRGIDAKANR 55

[Close]

BLAST of Lcy12g010240 vs. ExPASy TrEMBL
Match: A0A6J1EGK1 (B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111432355 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.0e-13
Identity = 44/55 (80.00%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1  MASRPVVPQQIRGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRGAPAATGR 56
          MA+RPVVPQQIRGEAAIGGGKQ K  A VDARN RALGDIGNLVTVRG  A   R
Sbjct: 1  MATRPVVPQQIRGEAAIGGGKQGKGGAAVDARNRRALGDIGNLVTVRGIDAKANR 55

[Close]

BLAST of Lcy12g010240 vs. ExPASy TrEMBL
Match: A0A6J1EAK2 (B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111432319 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.0e-12
Identity = 43/55 (78.18%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1  MASRPVVPQQIRGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRGAPAATGR 56
          MASRPVVPQQIRG+ AIGGGKQ K  A VDARN RALGDIGNLVTVRG  A   R
Sbjct: 1  MASRPVVPQQIRGDEAIGGGKQVKGGAAVDARNRRALGDIGNLVTVRGNDAKANR 55

[Close]

BLAST of Lcy12g010240 vs. ExPASy TrEMBL
Match: A0A5D3DGD1 (B-like cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00220 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.5e-12
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1  MASRPVVPQQIRGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRGAPAATGR 56
          MASRP+VPQQIRGEA IGGGKQAK  A  +A+N RALGDIGNLVTVRG  A   R
Sbjct: 1  MASRPIVPQQIRGEAVIGGGKQAKGVAGAEAKNRRALGDIGNLVTVRGIDAKANR 55

[Close]

BLAST of Lcy12g010240 vs. ExPASy TrEMBL
Match: E5GBN4 (B-like cyclin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.5e-12
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1  MASRPVVPQQIRGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRGAPAATGR 56
          MASRP+VPQQIRGEA IGGGKQAK  A  +A+N RALGDIGNLVTVRG  A   R
Sbjct: 1  MASRPIVPQQIRGEAVIGGGKQAKGVAGAEAKNRRALGDIGNLVTVRGIDAKANR 55

[Close]

BLAST of Lcy12g010240 vs. NCBI nr
Match: XP_023518290.1 (G2/mitotic-specific cyclin S13-7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.0 bits (206), Expect = 8.3e-13
Identity = 44/55 (80.00%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1  MASRPVVPQQIRGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRGAPAATGR 56
          MA+RPVVPQQIRGEAAIGGGKQ K  A VDARN RALGDIGNLVTVRG  A   R
Sbjct: 1  MATRPVVPQQIRGEAAIGGGKQGKGGAAVDARNRRALGDIGNLVTVRGIDAKANR 55

[Close]

BLAST of Lcy12g010240 vs. NCBI nr
Match: XP_022924970.1 (G2/mitotic-specific cyclin S13-7-like [Cucurbita moschata])

HSP 1 Score: 84.0 bits (206), Expect = 8.3e-13
Identity = 44/55 (80.00%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1  MASRPVVPQQIRGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRGAPAATGR 56
          MA+RPVVPQQIRGEAAIGGGKQ K  A VDARN RALGDIGNLVTVRG  A   R
Sbjct: 1  MATRPVVPQQIRGEAAIGGGKQGKGGAAVDARNRRALGDIGNLVTVRGIDAKANR 55

[Close]

BLAST of Lcy12g010240 vs. NCBI nr
Match: XP_022966121.1 (G2/mitotic-specific cyclin S13-7-like [Cucurbita maxima])

HSP 1 Score: 84.0 bits (206), Expect = 8.3e-13
Identity = 44/55 (80.00%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1  MASRPVVPQQIRGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRGAPAATGR 56
          MA+RPVVPQQIRGEAAIGGGKQ K  A VDARN RALGDIGNLVTVRG  A   R
Sbjct: 1  MATRPVVPQQIRGEAAIGGGKQGKGGAAVDARNRRALGDIGNLVTVRGIDAKANR 55

[Close]

BLAST of Lcy12g010240 vs. NCBI nr
Match: XP_038881434.1 (G2/mitotic-specific cyclin S13-7-like [Benincasa hispida])

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-12
Identity = 44/55 (80.00%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1  MASRPVVPQQIRGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRGAPAATGR 56
          MASRPVVPQQIRGEA IGGGKQAK  A  DARN RALGDIGNLVTVRG  A   R
Sbjct: 1  MASRPVVPQQIRGEAVIGGGKQAKGGAAADARNRRALGDIGNLVTVRGIDAKANR 55

[Close]

BLAST of Lcy12g010240 vs. NCBI nr
Match: XP_023517426.1 (G2/mitotic-specific cyclin S13-7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.0 bits (201), Expect = 3.1e-12
Identity = 43/55 (78.18%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1  MASRPVVPQQIRGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRGAPAATGR 56
          MASRPVVPQQIRG+ AIGGGKQ K  A VDARN RALGDIGNLVTVRG  A   R
Sbjct: 1  MASRPVVPQQIRGDEAIGGGKQGKGGAAVDARNRRALGDIGNLVTVRGIDAKANR 55

[Close]

BLAST of Lcy12g010240 vs. TAIR 10
Match: AT1G34460.1 (CYCLIN B1;5 )

HSP 1 Score: 40.8 bits (94), Expect = 7.5e-04
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 1   MASRPVVPQQIRGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRG 49
           MA+R  +P+Q+RG   + G K       V  +N RALGDIGNLV+V G
Sbjct: 113 MATRANIPEQVRGAPLVDGLKIQNKNGAV--KNRRALGDIGNLVSVPG 158

[Close]

BLAST of Lcy12g010240 vs. TAIR 10
Match: AT1G34460.2 (CYCLIN B1;5 )

HSP 1 Score: 40.8 bits (94), Expect = 7.5e-04
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 1   MASRPVVPQQIRGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRG 49
           MA+R  +P+Q+RG   + G K       V  +N RALGDIGNLV+V G
Sbjct: 113 MATRANIPEQVRGAPLVDGLKIQNKNGAV--KNRRALGDIGNLVSVPG 158

[Close]

BLAST of Lcy12g010240 vs. TAIR 10
Match: AT5G06150.1 (Cyclin family protein )

HSP 1 Score: 40.4 bits (93), Expect = 9.8e-04
Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 1  MASRPVVPQQIRGEAAIGGGKQAKAEATVDARNLRALGDIGNLVTVRG 49
          MA+R  VP+Q+RG   + G K       V +R  RALGDIGNLV+V G
Sbjct: 1  MATRANVPEQVRGAPLVDGLKIQNKNGAVKSR--RALGDIGNLVSVPG 46

The following BLAST results are available for this feature:

BLAST of Lcy12g010240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P25011	9.8e-09	58.93	G2/mitotic-specific cyclin S13-6 OS=Glycine max OX=3847 PE=2 SV=1	[more]
P34800	1.5e-04	58.33	G2/mitotic-specific cyclin-1 OS=Antirrhinum majus OX=4151 PE=2 SV=1	[more]

BLAST of Lcy12g010240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HNH5	4.0e-13	80.00	B-like cyclin OS=Cucurbita maxima OX=3661 GN=LOC111465899 PE=3 SV=1	[more]
A0A6J1EGK1	4.0e-13	80.00	B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111432355 PE=3 SV=1	[more]
A0A6J1EAK2	2.0e-12	78.18	B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111432319 PE=3 SV=1	[more]
A0A5D3DGD1	7.5e-12	74.55	B-like cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00220 ...	[more]
E5GBN4	7.5e-12	74.55	B-like cyclin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]

BLAST of Lcy12g010240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518290.1	8.3e-13	80.00	G2/mitotic-specific cyclin S13-7-like [Cucurbita pepo subsp. pepo]	[more]
XP_022924970.1	8.3e-13	80.00	G2/mitotic-specific cyclin S13-7-like [Cucurbita moschata]	[more]
XP_022966121.1	8.3e-13	80.00	G2/mitotic-specific cyclin S13-7-like [Cucurbita maxima]	[more]
XP_038881434.1	1.1e-12	80.00	G2/mitotic-specific cyclin S13-7-like [Benincasa hispida]	[more]
XP_023517426.1	3.1e-12	78.18	G2/mitotic-specific cyclin S13-7-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy12g010240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34460.1	7.5e-04	47.92	CYCLIN B1;5	[more]
AT1G34460.2	7.5e-04	47.92	CYCLIN B1;5	[more]
AT5G06150.1	9.8e-04	50.00	Cyclin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g010240.1	Lcy12g010240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0044772	mitotic cell cycle phase transition
biological_process	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity
cellular_component	GO:0000307	cyclin-dependent protein kinase holoenzyme complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity