Lcy12g010000 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g010000
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Calpain-type cysteine protease DEK1
Location	Chr12: 37099903 .. 37100286 (-)
RNA-Seq Expression	Lcy12g010000
Synteny	Lcy12g010000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCACACCCTTTTTAGTCAATTGCAGGTGGTGGTGCCAAAAGCCCTAGTAAAAACCTTTGGAAAGCCGTTGCTTCAAGTTTCCCTTCCTTCTTTTTCCTTTATTAGATGTTCTATTCGCAAAGGCTTGAATATTTATTTTCGAAAGGATTGTTGGGTGGGTGATAAGCCCCTTAATGAGTTATTCCTGCATTTATATCATCTCTCAAGTATGAAGCTGCATTTCGTGGCTTCAATTTTACTATCCTCAGATCCTTTTTCTTCGTTTTATTTTGGCTTCCTCCTCCCTCTTTATGATAGAGAGGTGATAGATGGGGTGGTTTTTCTTTCCCTTCTTCACGATCAACACACGTTCCAAGCAAGAAGGGACTCTAGGTTTTAG

mRNA sequence

ATGACCCACACCCTTTTTAGTCAATTGCAGGTGGTGGTGCCAAAAGCCCTAGTAAAAACCTTTGGAAAGCCGTTGCTTCAAGTTTCCCTTCCTTCTTTTTCCTTTATTAGATGTTCTATTCGCAAAGGCTTGAATATTTATTTTCGAAAGGATTGTTGGGTGGGTGATAAGCCCCTTAATGAGTTATTCCTGCATTTATATCATCTCTCAAGTATGAAGCTGCATTTCGTGGCTTCAATTTTACTATCCTCAGATCCTTTTTCTTCGTTTTATTTTGGCTTCCTCCTCCCTCTTTATGATAGAGAGGTGATAGATGGGGTGGTTTTTCTTTCCCTTCTTCACGATCAACACACGTTCCAAGCAAGAAGGGACTCTAGGTTTTAG

Coding sequence (CDS)

ATGACCCACACCCTTTTTAGTCAATTGCAGGTGGTGGTGCCAAAAGCCCTAGTAAAAACCTTTGGAAAGCCGTTGCTTCAAGTTTCCCTTCCTTCTTTTTCCTTTATTAGATGTTCTATTCGCAAAGGCTTGAATATTTATTTTCGAAAGGATTGTTGGGTGGGTGATAAGCCCCTTAATGAGTTATTCCTGCATTTATATCATCTCTCAAGTATGAAGCTGCATTTCGTGGCTTCAATTTTACTATCCTCAGATCCTTTTTCTTCGTTTTATTTTGGCTTCCTCCTCCCTCTTTATGATAGAGAGGTGATAGATGGGGTGGTTTTTCTTTCCCTTCTTCACGATCAACACACGTTCCAAGCAAGAAGGGACTCTAGGTTTTAG

Protein sequence

MTHTLFSQLQVVVPKALVKTFGKPLLQVSLPSFSFIRCSIRKGLNIYFRKDCWVGDKPLNELFLHLYHLSSMKLHFVASILLSSDPFSSFYFGFLLPLYDREVIDGVVFLSLLHDQHTFQARRDSRF

Homology

[Close]

BLAST of Lcy12g010000 vs. ExPASy TrEMBL
Match: A0A6J1DFI2 (uncharacterized protein LOC111019624 OS=Momordica charantia OX=3673 GN=LOC111019624 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.3e-05
Identity = 37/97 (38.14%), Postives = 48/97 (49.48%), Query Frame = 0


Query: 31  PSFSF-IRCSIRKGLNIYFRKDCWVGDKPLNELFLHLYHLSSMKLHFVASILLSSDPFSS 90
           P FS  +R S+  GLN YF +D W+G+KPL+  F  +Y LS  KL  VA +L   +  SS
Sbjct: 292 PVFSLSLRVSVGDGLNAYFWEDTWLGNKPLSLAFPRIYFLSEKKLLSVAEVLNFGEEDSS 351

Query: 91  FYFGFLLPLYDREVIDGVVFLSLLHDQHTFQARRDSR 127
              G    L D E ++    L LL        R D R
Sbjct: 352 ISLGLSRSLTDPESLEIAALLDLLPSVSCSSGREDVR 388

[Close]

BLAST of Lcy12g010000 vs. ExPASy TrEMBL
Match: A0A5D3CI74 (Calpain-type cysteine protease DEK1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00980 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-04
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 55  GDKPLNELFLHLYHLSSMKLHFVASILLSSDPFSSFYFGFLLPLYDREVIDGVVFLSLLH 114
           G++PL  LF  LYHLSS+K HF+A  L+ +    SF FGF   L DRE  + V  +SLL 
Sbjct: 136 GERPLCGLFPCLYHLSSLKNHFMADFLVWNGNSCSFSFGFRRALSDRETSNVVALISLL- 195

Query: 115 DQHTFQ-ARRD 125
           + H+F+  RRD
Sbjct: 196 ESHSFRLGRRD 205

[Close]

BLAST of Lcy12g010000 vs. NCBI nr
Match: XP_022151711.1 (uncharacterized protein LOC111019624 [Momordica charantia])

HSP 1 Score: 58.5 bits (140), Expect = 4.7e-05
Identity = 37/97 (38.14%), Postives = 48/97 (49.48%), Query Frame = 0


Query: 31  PSFSF-IRCSIRKGLNIYFRKDCWVGDKPLNELFLHLYHLSSMKLHFVASILLSSDPFSS 90
           P FS  +R S+  GLN YF +D W+G+KPL+  F  +Y LS  KL  VA +L   +  SS
Sbjct: 292 PVFSLSLRVSVGDGLNAYFWEDTWLGNKPLSLAFPRIYFLSEKKLLSVAEVLNFGEEDSS 351

Query: 91  FYFGFLLPLYDREVIDGVVFLSLLHDQHTFQARRDSR 127
              G    L D E ++    L LL        R D R
Sbjct: 352 ISLGLSRSLTDPESLEIAALLDLLPSVSCSSGREDVR 388

[Close]

BLAST of Lcy12g010000 vs. NCBI nr
Match: TYK09969.1 (calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 5.2e-04
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 55  GDKPLNELFLHLYHLSSMKLHFVASILLSSDPFSSFYFGFLLPLYDREVIDGVVFLSLLH 114
           G++PL  LF  LYHLSS+K HF+A  L+ +    SF FGF   L DRE  + V  +SLL 
Sbjct: 136 GERPLCGLFPCLYHLSSLKNHFMADFLVWNGNSCSFSFGFRRALSDRETSNVVALISLL- 195

Query: 115 DQHTFQ-ARRD 125
           + H+F+  RRD
Sbjct: 196 ESHSFRLGRRD 205

The following BLAST results are available for this feature:

BLAST of Lcy12g010000 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g010000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DFI2	2.3e-05	38.14	uncharacterized protein LOC111019624 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5D3CI74	2.5e-04	47.89	Calpain-type cysteine protease DEK1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of Lcy12g010000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151711.1	4.7e-05	38.14	uncharacterized protein LOC111019624 [Momordica charantia]	[more]
TYK09969.1	5.2e-04	47.89	calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy12g010000 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g010000.1	Lcy12g010000.1	mRNA