Lcy12g009950 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g009950
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr12: 36955855 .. 36960627 (-)
RNA-Seq Expression	Lcy12g009950
Synteny	Lcy12g009950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGCCAAACAGAGCTGGAGATTAATACGATATCCTAATAGCCTTCTAGCCAAGGTGCTTCGCGGGAGATATTTTAAAACTGGGCATTTTCTTAAAGCTCAGTTAGGAAGCAATCCTTCTTACACATGGAGGAGTATTCTTTGGGGTCGTGAACTTTTTGAGAAAGGCTATCGTTGGCGTGTGGGAAACGGTCTATCCATTGACGCTACAAGTGATCCTTGGATTCCTAAGGAGGGATCGTGCAAACCAACTTTGACCCACCCGAGTATACATCACTACTCAGTAGCTCAGCTTATGGATAATAATGGCAGCTGGAATGAATCTTTGATTCGTGGAGCTTTCATGGTGGATGAGGCCGAGAGAATCCTTAATATCCCATTGAACCCATTGATGAGAGATGATGAGATTATTTGGCATCTTGATTCTAAAGGACAGTTCTCTGTTAAGAGCGCTTATAGATTGGGCAAATTTCTAAGCGACGCCGGTGAAGCATCATCATCTAGCTACAATAACCAGGAGTACTTTTGGAAAACATATTGGAGAACAAAAATTCCTCCCAAAATCAAACATTTTGGATGGAAACTTTATAATAATGCTTTGCCTACTCTAATGAATCTCATTAATCGTGGCTTGGATACTAATATGATGTGTTTACTGTGTAGGGAAAATGAGGAATCTACGAAACATCTATTTTGGGGATGCAAACACTCGAGGAGAATTTGGAATAATTATTTGCTTGATTCTGACTTAATTTGGTTATTTGGCAGGAATGGATGGTCTACCCAAGATGTATGTGAGCGATTATGGAAGGGAAGCAGGGAGCTAGGGATGGATGAACGGCGAATGAAAACGAGCTTAGTGGTTTGTTGGCAACTATGGAATTACAGAAATGCAATTAAACATGGAAAGCAGCAGCCCAACCTATTTGTGCTGAAAAAGCAAATTGACTCATACCTTGAGGAGCTCGACGGTCAAAATCAAAATTCCAAAAGAGAGCCCAGACGATATCTAAGTTCAGAGGCTACCACAGAAGACCCATCTCCGGCGAACTGGTTATCACCCCCGGCAAACGATTGGAAGTTGAATTGCGACGCTGCTTGGTGTGAGAAACGAAATCAGGGCGGCATTGGATGGATTTTGAGGAGAGGAAACGGCACTCTAGTAGCTGCCGGCTTCAGGTGCATTCATCAGCGATGGAAGGTTCTCTGGTTGGAAGCTCTTGCAATCATCGAAGGCCTTCGTCACATCCCGTCAGCGTCGGTTGGCATCCACGTGGAAACAGATGCGCTCCAAGTAGTTAATCTCATGGAGGATAAAGATGGGGATATTACAGAGACTTTGGTTTTCATTAAGGAAGTTCAAGCCCTAATGGGAGAATTGAATATTGCTTCTTTCAAACATGTGAAAAGAGTCCACAATGGCATGGCCCACCGCCTGGCTAACATAGCTTGTCAAACTGGAACTTCTTATTTTTGGAATGATTTTTTTCCTATTTGGTTGTTGGATTTAAATGATGTGGACATTGGGTTTGAAATTCAAACTAATAGGGGTTCTGTCCTATAGTTGATATCCCAATGGAAAGTTTATCTTTAGTTTAATGTAATTTTCTTCTCAAAAAAAAAAAAAAAAAAAAAAACTTTCAATTTTATTTCTAATAAGTCTCCAAACTATAAAAATGTATAACAGATCATTAAATTTTCAAGTTTATTTAATAGGTCCTTGATATATTCTTTTTTTTTTTTTTTTGTTAAATTAACAAATCTATTAGATATAAAATTGAATTTCATGTTTAATAAGACCCTAAACTTTCAACTTTATGTCAGTAGATCCGTGAATTTTAAAAAACTTTGAATAGGTCAATGACTTATTAGCCACAAAAAAAAAATGAAAATTAGGGACCTATTAGACACAAAATTGAAAATTTAAGGACCTATTAGATATTTTTTAAAGTTTAGGGACTAAATAGATACAAAACTAAAAGTTTAGGAACCTATTAGATATTTTTTAAAGTTCGCAGACTAAACAGACACAAACCTAACTTTAGGAATTGAACTTTTAATTTATCCTAGTGTGTAATAGGGAGACCTCACATATATATATACAACTAGGAGTGCAAGCAAAAACCGGAAAACCGACAAACCGAACCGAACCAAACCGATCCAATGGTTTGGTTCGGTTATTTTGAAAAAATATGGACATCTCGGTTTCGTTTTTGGGAAAACCGAAAATTGTCGGTTCGGTTCGGTTTTTCATTCAAAAAACCAATAAAAAACCGAACCGAACCGACTATATATATACCACTTAAAAAAAACCCTAACCTTTTGCATCTTGCCTCTCTCCACATCTCACTTTTTTCCTAAATTGGCTAGAAATCTCTTTTTTCTATGTAATTTAAAGTATAAATTATGATATTATTTGTATGTTTATCTTTATTGTGTATATTTATTTAAAATCAAATATTTAAAAATTGTTATTTACGGATTAGTTTGAGAAAATTAAGTAATTGTATTGAATAAATTAATTAATTGAAGTTTGTATTGAAAAAATGGGTACAATGGGTCATTGGGCCAAAAATTAAAACAAAAAAAAAAACAAATGGGTTGAAATTAGAAGAGAAAATGAGTCATTTAAAAAAATAAAAATAAAAAAGCCCACATTGGGCCCAAAACCGAAAACCGATCCATTGGACAAACCGAACCGAAAGAAAACCGAACCATTGGACATGTCCTATATTGGACATTGGTTCGGTTCAGAGTTTTGTAAAACCGATTGGATCGGTTCGGTTCGCGGTTTGGTCAAAAACCGACAAAACCGAACCGAGTATCACCCCTATATACAACCCTAGCCATTGAGAAGGTAAAAGGTAAATGTTGGTTGTTGGTAGTTTTTTTTTTTTTTTTTTTTTTTTGACAACATATGGAGTGGGGGATTTGAACATTGGTAGCCTTTCTCAGCAGTAAAAGGGACTTTTTCATAATATTTTCCCTCCTCCTGATCGATTGAGGCATCTCTAAGCTACTTGTCTGAGGTGCAAGAAATAAAGTTTGAAAACCATTGGTCAAGCCTTCTAAATTTGTGAAAGTATTAATTAAGGAGATGAAATAATTGTAGGCAGAAGTTGGACTCAAGGGAGTAAGATCACTAGCCTATGGTTTTAGAATATCGCCATTTGAAAAATTATTTGGTTATACGTCTAATTATTCTTCTTTGCGTGTATTTGGGAGCTCTACTTTCTTGTGTTCTTCGTCCTCATGTTGAACAAGATAAACTCTCCTCTTGGTCCACTATTTATTCCTCCTTGGGTATGACATAGAACAAAGGGGCAGTTGCATAGATGACAAATTGGACCAAATTAATAGCAAATATAGCACAGTTACAAACTAGTTGCAAATATAACAAAATTAATTGTACAAGACCAAAAAGTTGTTGTCAGATTCTATAAGTGTCTATCACTGATAAACTTTGATTATTCAAAGTATATCAGTGTCTATCGTTGATAAACTTTGATTAATCAAAGTCTATTAGTGACTATCACTGATAGACTTTGATTAATCAAAGTCTATCAATGATAGTCACTGATAGATTTTGATTAACCAGAGTTTATCAAACGATAGACACTGATAGACTCTGAATAATCGGAGTCTATCAGTAGATAGACTCTGAATAATCAGAGTTTATCAGTAGACTGATAGATTCTGATTAATTAGAGTCTATCGTTGATAAACTCTGATAATCGAAGTTTATCAGATAGATTCTAATTAACCAGAGTATTTGCAATTTTTTTACATTGTGCTATATTTGCTATTAATTTGGTCCAATTTTCCACCCACCGCAAATTCTCAAAGATTATATTTGAACGTGCTCAAATATATCTGATAATAAGGTTGTGAATACTTCTCTTGAGCTAATTAATGCTTGTTATTCTAGTTCAAATGGCACTCCTCTACCAAATAGTTTGTATCGAATTATTGTTAATAACCTAGTTTATCTCACTATTACTCGACCTGATATATATTTGCATATATTTTCCACATTGTAAGTTAGTTTGTTGCCTCTCAAATTACTGTTCATTGGGTTATATAATTCATCCGCAATTTAAGATATCTTTGTGATACTTAATTTCAATATCTTTTGCTCTTTCATCTACTTCTTCACTACAATTGCATGCCTACTCCGATGCTAATTGGGCAAATGTGCTAATAGCTTCTACCATCTATGAGAGATAGTTGAGTTTGGATGGTTTTGCTTGTTATATAGGTTGTTTCTCTTTATGAACCCATGCCATTGTACCGTGATAATTAAAGTGTAATTTAGATAACACATAACTAGGGGTGAGCACGGTTCAGTTCGGTCCGGTTTTGGACCAAACCAATGACCGAACTGAACTCTTCGGTTCTTAAAAGATCTAAACCGAGAGAAACCGAAAGTTTCATCAATTTCAGTTTAAAACTGAATCGATCATTTTCGGTTCTATGCAGTTCAATTCGGTTTTAAACCGATTTTTGTTTTTTCTTTTTTTTTTCTTTTTTCTAAGAAGTAAGAACATTAGCAACTTTTGTTTTTAAAAAAAAGTAAAATTCTTTACCCTGTGAAGATGCATACAGTGAGAGGAAGAAAGATAGTGGAGGCTATGGGGAAGGGCGGCGTCAACTCCGATCCAAACCTGAGGGAAGAAGCTTCGAGTGTGAGGTCGGCTTTGGTGACGATGACAATGGAGAAAAGCTGTCACAGCGGGGAAGGGCTTCAACGAAAAGGAAAATAGCTCAGTGA

mRNA sequence

ATGCTAGCCAAACAGAGCTGGAGATTAATACGATATCCTAATAGCCTTCTAGCCAAGCAAATTGACTCATACCTTGAGGAGCTCGACGGTCAAAATCAAAATTCCAAAAGAGAGCCCAGACGATATCTAAGTTCAGAGGCTACCACAGAAGACCCATCTCCGGCGAACTGGTTATCACCCCCGGCAAACGATTGGAAGTTGAATTGCGACGCTGCTTGGTGTGAGAAACGAAATCAGGGCGGCATTGGATGGATTTTGAGGAGAGGAAACGGCACTCTAGTAGCTGCCGGCTTCAGGTGCATTCATCAGCGATGGAAGGTTCTCTGGTTGGAAGCTCTTGCAATCATCGAAGGCCTTCGTCACATCCCGTCAGCGTCGGTTGGCATCCACGTGGAAACAGATGCGCTCCAAGTAGTTAATCTCATGGAGGATAAAGATGGGGATATTACAGAGACTTTGGTTTTCATTAAGGAAGTTCAAGCCCTAATGGGAGAATTGAATATTGCTTCTTTCAAACATGTGAAAAGAGTCCACAATGGCATGGCCCACCGCCTGGCTAACATAGCTTGTCAAACTGGAACTTCTTATTTTTGGAATGATTTTTTTCCTATTTGGTTGTTGGATTTAAATGATGTGGACATTGGTGAGAGGAAGAAAGATAGTGGAGGCTATGGGGAAGGGCGGCGTCAACTCCGATCCAAACCTGAGGGAAGAAGCTTCGAGTGTGAGGTCGGCTTTGGTGACGATGACAATGGAGAAAAGCTGTCACAGCGGGGAAGGGCTTCAACGAAAAGGAAAATAGCTCAGTGA

Coding sequence (CDS)

ATGCTAGCCAAACAGAGCTGGAGATTAATACGATATCCTAATAGCCTTCTAGCCAAGCAAATTGACTCATACCTTGAGGAGCTCGACGGTCAAAATCAAAATTCCAAAAGAGAGCCCAGACGATATCTAAGTTCAGAGGCTACCACAGAAGACCCATCTCCGGCGAACTGGTTATCACCCCCGGCAAACGATTGGAAGTTGAATTGCGACGCTGCTTGGTGTGAGAAACGAAATCAGGGCGGCATTGGATGGATTTTGAGGAGAGGAAACGGCACTCTAGTAGCTGCCGGCTTCAGGTGCATTCATCAGCGATGGAAGGTTCTCTGGTTGGAAGCTCTTGCAATCATCGAAGGCCTTCGTCACATCCCGTCAGCGTCGGTTGGCATCCACGTGGAAACAGATGCGCTCCAAGTAGTTAATCTCATGGAGGATAAAGATGGGGATATTACAGAGACTTTGGTTTTCATTAAGGAAGTTCAAGCCCTAATGGGAGAATTGAATATTGCTTCTTTCAAACATGTGAAAAGAGTCCACAATGGCATGGCCCACCGCCTGGCTAACATAGCTTGTCAAACTGGAACTTCTTATTTTTGGAATGATTTTTTTCCTATTTGGTTGTTGGATTTAAATGATGTGGACATTGGTGAGAGGAAGAAAGATAGTGGAGGCTATGGGGAAGGGCGGCGTCAACTCCGATCCAAACCTGAGGGAAGAAGCTTCGAGTGTGAGGTCGGCTTTGGTGACGATGACAATGGAGAAAAGCTGTCACAGCGGGGAAGGGCTTCAACGAAAAGGAAAATAGCTCAGTGA

Protein sequence

MLAKQSWRLIRYPNSLLAKQIDSYLEELDGQNQNSKREPRRYLSSEATTEDPSPANWLSPPANDWKLNCDAAWCEKRNQGGIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAIIEGLRHIPSASVGIHVETDALQVVNLMEDKDGDITETLVFIKEVQALMGELNIASFKHVKRVHNGMAHRLANIACQTGTSYFWNDFFPIWLLDLNDVDIGERKKDSGGYGEGRRQLRSKPEGRSFECEVGFGDDDNGEKLSQRGRASTKRKIAQ

Homology

[Close]

BLAST of Lcy12g009950 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-22
Identity = 68/194 (35.05%), Postives = 104/194 (53.61%), Query Frame = 0


Query: 15  SLLAKQIDSYLEELDGQNQNSKREPRRYLSSEATTEDPSPANWLSPPANDWKLNCDAAWC 74
           S + +Q+  ++ E   Q++ S     + L+++          W  PP + W LN DA+W 
Sbjct: 37  STMIQQLTKFVTESSYQSETSLSMLHKTLNNK--------LKWEPPPMHIWTLNADASWS 96

Query: 75  EKRNQGGIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAIIEGLRHIPSASV--GIHVE 134
           +  ++GGIGWI+R  +G +V AG R +     V  LEA AI+EGLR++ +  V   +H+E
Sbjct: 97  DSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLRPLHIE 156

Query: 135 TDALQVVNLMEDKDGDITETLVFIKEVQALMGELNIASFKHVKRVHNGMAHRLANIACQT 194
           TD+ +V +L+  K  D+T+T   ++E+  L     I +F  V R  NG AH LA  A   
Sbjct: 157 TDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVGRETNGCAHSLAQRASVL 216

Query: 195 GTSYFWNDFFPIWL 207
             S  W D FP WL
Sbjct: 217 RESMIWVDCFPNWL 222

[Close]

BLAST of Lcy12g009950 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-21
Identity = 64/173 (36.99%), Postives = 95/173 (54.91%), Query Frame = 0


Query: 21  IDSYLEELDGQNQNSK-REPRRYLSSEATTEDPSPANWLSPPANDWKLNCDAAWCEKRNQ 80
           ID Y+    G+N N K +   + L      ED + A W  P +N WKLN +AAW    N 
Sbjct: 42  IDRYIINSAGRNTNLKGKSTNKDLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNT 101

Query: 81  GGIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAIIEGLRHIPSASV-GIHVETDALQV 140
           GGIGWILR   G ++ A  R I     + +LE +AI EGLR I       IH+E+D+L+ 
Sbjct: 102 GGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEA 161

Query: 141 VNLMEDKDGDITETLVFIKEVQALMGELNIASFKHVKRVHNGMAHRLANIACQ 192
           ++L+  +  D TE +  ++E+  +M ++ I S +H+ R  N +AH LA  A +
Sbjct: 162 IHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHISREANKVAHGLARRAME 214

[Close]

BLAST of Lcy12g009950 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 9.1e-20
Identity = 63/181 (34.81%), Postives = 94/181 (51.93%), Query Frame = 0


Query: 21  IDSYLEELDGQNQNSK-REPRRYLSSEATTEDPSPANWLSPPANDWKLNCDAAWCEKRNQ 80
           ID Y+    G++ N K +   + L       D + A W  P +N WKLN DAAW    N 
Sbjct: 42  IDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNT 101

Query: 81  GGIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAIIEGLRHIPSASV---------GIH 140
           GGIGWILR   G ++ A  R I     + +LE +AI EGLR I               IH
Sbjct: 102 GGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIH 161

Query: 141 VETDALQVVNLMEDKDGDITETLVFIKEVQALMGELNIASFKHVKRVHNGMAHRLANIAC 192
           +E+D+L+ ++L+  +  D TE +  ++E+  +M ++ I S +H+ R  N +AH LA  A 
Sbjct: 162 LESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRAM 221

[Close]

BLAST of Lcy12g009950 vs. ExPASy TrEMBL
Match: A0A6J5UAY2 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20161 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.7e-16
Identity = 53/162 (32.72%), Postives = 90/162 (55.56%), Query Frame = 0


Query: 56   NWLSPPANDWKLNCDAAWCEKRNQGGIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAI 115
            +W  PP    K+NCDAAW  +   GG+GW++R  +G +V AG +   +    L +EA AI
Sbjct: 1146 SWRKPPYGVLKVNCDAAWVSQTQMGGVGWVVRDSDGWMVQAGGKGDMRGGSALAMEAEAI 1205

Query: 116  IEGL-RHIPSASVGIHVETDALQVVNLMEDK-DGDI-TETLVFIKEVQALMGELNIASFK 175
             E L   + S    + VE+D+LQV+ ++  + + DI  +T+VF  +++ L+G+     F 
Sbjct: 1206 REALVACVQSGLSKLEVESDSLQVIRMIGGEWNMDIAVDTIVF--DIKQLVGQFQHCVFL 1265

Query: 176  HVKRVHNGMAHRLANIACQTGTSYFWNDFFPIWLLDLNDVDI 215
            +  R  N  AH++A    + G  + W+D +P W+ D+   D+
Sbjct: 1266 YTPRNCNKAAHKIAAFVSRVGGVHTWDDLWPEWIFDILVSDV 1305

[Close]

BLAST of Lcy12g009950 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.7e-13
Identity = 48/123 (39.02%), Postives = 67/123 (54.47%), Query Frame = 0


Query: 21  IDSYLEELDGQNQNSKREPRRYLSSEATTEDPSPANWLSPPANDWKLNCDAAWCEKRNQG 80
           ID Y+    GQ+ N KR+ + +        D + A W  P +N WKLN DAAW    N  
Sbjct: 220 IDRYIINSAGQDTNLKRKSKDF-HPIRRIGDNTRARWKPPTSNSWKLNTDAAWRADTNTD 279

Query: 81  GIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAIIEGLRHIPSASV-GIHVETDALQVV 140
           GIGWILR   G ++  G R I     + +LE +AI EGLR I       IH+E+D+L+ +
Sbjct: 280 GIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAI 339

Query: 141 NLM 143
           +L+
Sbjct: 340 HLL 341

[Close]

BLAST of Lcy12g009950 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-22
Identity = 68/194 (35.05%), Postives = 104/194 (53.61%), Query Frame = 0


Query: 15  SLLAKQIDSYLEELDGQNQNSKREPRRYLSSEATTEDPSPANWLSPPANDWKLNCDAAWC 74
           S + +Q+  ++ E   Q++ S     + L+++          W  PP + W LN DA+W 
Sbjct: 37  STMIQQLTKFVTESSYQSETSLSMLHKTLNNK--------LKWEPPPMHIWTLNADASWS 96

Query: 75  EKRNQGGIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAIIEGLRHIPSASV--GIHVE 134
           +  ++GGIGWI+R  +G +V AG R +     V  LEA AI+EGLR++ +  V   +H+E
Sbjct: 97  DSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLRPLHIE 156

Query: 135 TDALQVVNLMEDKDGDITETLVFIKEVQALMGELNIASFKHVKRVHNGMAHRLANIACQT 194
           TD+ +V +L+  K  D+T+T   ++E+  L     I +F  V R  NG AH LA  A   
Sbjct: 157 TDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVGRETNGCAHSLAQRASVL 216

Query: 195 GTSYFWNDFFPIWL 207
             S  W D FP WL
Sbjct: 217 RESMIWVDCFPNWL 222

[Close]

BLAST of Lcy12g009950 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 113.6 bits (283), Expect = 2.6e-21
Identity = 64/173 (36.99%), Postives = 95/173 (54.91%), Query Frame = 0


Query: 21  IDSYLEELDGQNQNSK-REPRRYLSSEATTEDPSPANWLSPPANDWKLNCDAAWCEKRNQ 80
           ID Y+    G+N N K +   + L      ED + A W  P +N WKLN +AAW    N 
Sbjct: 42  IDRYIINSAGRNTNLKGKSTNKDLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNT 101

Query: 81  GGIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAIIEGLRHIPSASV-GIHVETDALQV 140
           GGIGWILR   G ++ A  R I     + +LE +AI EGLR I       IH+E+D+L+ 
Sbjct: 102 GGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEA 161

Query: 141 VNLMEDKDGDITETLVFIKEVQALMGELNIASFKHVKRVHNGMAHRLANIACQ 192
           ++L+  +  D TE +  ++E+  +M ++ I S +H+ R  N +AH LA  A +
Sbjct: 162 IHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHISREANKVAHGLARRAME 214

[Close]

BLAST of Lcy12g009950 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 107.5 bits (267), Expect = 1.9e-19
Identity = 63/181 (34.81%), Postives = 94/181 (51.93%), Query Frame = 0


Query: 21  IDSYLEELDGQNQNSK-REPRRYLSSEATTEDPSPANWLSPPANDWKLNCDAAWCEKRNQ 80
           ID Y+    G++ N K +   + L       D + A W  P +N WKLN DAAW    N 
Sbjct: 42  IDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNT 101

Query: 81  GGIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAIIEGLRHIPSASV---------GIH 140
           GGIGWILR   G ++ A  R I     + +LE +AI EGLR I               IH
Sbjct: 102 GGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIH 161

Query: 141 VETDALQVVNLMEDKDGDITETLVFIKEVQALMGELNIASFKHVKRVHNGMAHRLANIAC 192
           +E+D+L+ ++L+  +  D TE +  ++E+  +M ++ I S +H+ R  N +AH LA  A 
Sbjct: 162 LESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRAM 221

[Close]

BLAST of Lcy12g009950 vs. NCBI nr
Match: CAB4273082.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 95.1 bits (235), Expect = 9.6e-16
Identity = 53/162 (32.72%), Postives = 90/162 (55.56%), Query Frame = 0


Query: 56   NWLSPPANDWKLNCDAAWCEKRNQGGIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAI 115
            +W  PP    K+NCDAAW  +   GG+GW++R  +G +V AG +   +    L +EA AI
Sbjct: 1146 SWRKPPYGVLKVNCDAAWVSQTQMGGVGWVVRDSDGWMVQAGGKGDMRGGSALAMEAEAI 1205

Query: 116  IEGL-RHIPSASVGIHVETDALQVVNLMEDK-DGDI-TETLVFIKEVQALMGELNIASFK 175
             E L   + S    + VE+D+LQV+ ++  + + DI  +T+VF  +++ L+G+     F 
Sbjct: 1206 REALVACVQSGLSKLEVESDSLQVIRMIGGEWNMDIAVDTIVF--DIKQLVGQFQHCVFL 1265

Query: 176  HVKRVHNGMAHRLANIACQTGTSYFWNDFFPIWLLDLNDVDI 215
            +  R  N  AH++A    + G  + W+D +P W+ D+   D+
Sbjct: 1266 YTPRNCNKAAHKIAAFVSRVGGVHTWDDLWPEWIFDILVSDV 1305

[Close]

BLAST of Lcy12g009950 vs. NCBI nr
Match: XP_015382715.1 (uncharacterized protein LOC107175626 [Citrus sinensis])

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-14
Identity = 59/166 (35.54%), Postives = 81/166 (48.80%), Query Frame = 0


Query: 47  ATTEDPSPANWLSPPANDWKLNCDAAWCEKRNQGGIGWILRRGNGTLVAAGFRCIHQRWK 106
           + T + S   W  PP N  KLN DAA   K  + G+G +LR  NG +VAAG + +  R  
Sbjct: 255 SNTREVSQQRWSPPPKNVLKLNVDAATNNKNQKVGLGAVLRDSNGRVVAAGIKQVSFRKD 314

Query: 107 VLWLEALAIIEGLRHI-PSASVGIHVETDALQVVNLMEDKDGDITETLVFIKEVQALMGE 166
           V + EA AI  GL+    +A+  + VETD   V  L+ +  G  +E    I E+Q    E
Sbjct: 315 VSYAEAEAIQWGLQIAKEAAATSLIVETDCKDVAELVNNTKGSRSEIFWIISEIQTQKRE 374

Query: 167 LNIASFKHVKRVHNGMAHRLANIACQTGTSYFWNDFFPIWLLDLND 212
                F  V R  N  AH LA  A +  T+  W D  PI + ++ D
Sbjct: 375 FQRIHFNFVPRFCNAHAHSLAKHALRKDTAAVWLDILPIEVQNVFD 420

[Close]

BLAST of Lcy12g009950 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.3e-05
Identity = 50/204 (24.51%), Postives = 77/204 (37.75%), Query Frame = 0


Query: 7   WRLIRYPNSLLAKQIDSYLEELDGQNQNSKREPRRYLSSEATTE--------DPSPANWL 66
           WR+ +  N L+     +  +       N  +E   +L +  T E        DPS     
Sbjct: 49  WRIWKSGNDLVFNHTRTKFQTTVEMALNDTKE---WLDNTMTNEQQNGNRNADPSRNTKW 108

Query: 67  SPPAND-WKLNCDAAWCEKRNQGGIGWILRRGNGTLVAAGFRCIHQRWKVLWLEALAIIE 126
           SPP  D  K N DA+  E+    G+GWILR   GT++  G      R      E   +I 
Sbjct: 109 SPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLIW 168

Query: 127 GLRHIPSASVG-----IHVETDALQVVNLMEDKDGDITETLVFIKEVQALMGELNIASFK 186
            ++    AS G     +  E D   +  ++  K  +      F+  +Q+ +       F 
Sbjct: 169 AIQ----ASYGFGHKKVIFEGDNQTITRMINTKSSN-PRLQHFLDTIQSWIPSFESIEFS 228

Query: 187 HVKRVHNGMAHRLANIACQTGTSY 197
              R  NG A  LA  A +  T +
Sbjct: 229 FKHREQNGCADFLAKQAIKENTQW 244

The following BLAST results are available for this feature:

BLAST of Lcy12g009950 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g009950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	1.5e-22	35.05	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CP26	1.3e-21	36.99	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DSV1	9.1e-20	34.81	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J5UAY2	4.7e-16	32.72	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
A0A6J1DL64	3.7e-13	39.02	uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Lcy12g009950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	3.1e-22	35.05	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022143535.1	2.6e-21	36.99	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022156777.1	1.9e-19	34.81	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
CAB4273082.1	9.6e-16	32.72	unnamed protein product [Prunus armeniaca]	[more]
XP_015382715.1	2.4e-14	35.54	uncharacterized protein LOC107175626 [Citrus sinensis]	[more]

BLAST of Lcy12g009950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65005.1	1.3e-05	24.51	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 63..191 e-value: 9.3E-15 score: 56.8
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 68..188 e-value: 1.2E-18 score: 67.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 218..269
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 218..260
None	No IPR available	PANTHER	PTHR47723	OS05G0353850 PROTEIN	coord: 44..214
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 67..187 e-value: 9.18361E-18 score: 75.0432
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 63..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g009950.1	Lcy12g009950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity