Lcy12g009870 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g009870
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Protein TIC 20
Location	Chr12: 36828811 .. 36835115 (-)
RNA-Seq Expression	Lcy12g009870
Synteny	Lcy12g009870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTCTTCTTCCTCCCGCCTCACGTCTCCAGCCCATCTCCGGTCAGTCTCCTCCTCCTTCGACGTCAGCAGCTGCTCCTCCAACCTGCGACCCAGACCGGCAGCGATGTGTGTGGAGTAACCCACGCGACGGCGGACTCGAGCAGTCTTCTTCTCCGGCGCGAGCACCTATCACGAACCGCTACGCACGCGCAGCGAACTCTCCTGGCGACGAGCGGCGGCGCAAGAGTCTGTAGTGTGACGGAACCTCGAACGACGGACCCACGGGGCGCAAGCTCATCTGTTCGACGACCACGAATTGGCGAGGACGAACCTCCATCTCCGACAGCCAGATCTGTTCCTGACAACTTGGAACTGCAAGCAACGTGATTTCTCCCCTGAGGCAACATTCGGCAGCAATCCACAACCTGAAGGGCCTCAAGGATTAGTGGGTAATGACTTGCTCTAATCTCTTTTTGGATTTAATTAAGTGTTTTATGTCTGATTCTAAGGAACTCTTCTGCATTTAGGTTTGCACTGTTCGAATTCAAGTTTAAGGTTGACGTTGGATAAGAAAAAGTAAGTAGTTCTTACTTGTAGAATATGTTTCCTCTTTGTGGTATGCCTTGTTAATTTTATGATGTATGTAATTTAATTTGTATGCTATTATGAACGGTTATATGTTCTGGTATGTATAAACATGCTGTGATGTTGGGTTATGCTCTCGTGACGTTAAGCATGTTGCGTATTGAGATTTTATGAAATTATACGATAGTATGTTGTTTAGCCTGTTGATGTGGTTAATGGGCTGAAGTATGGGCTAGAAAGCATTGATAGTATGTGCATACATAAGAAGTTGTGAGATTGATTAGTGAAAAAGGTGTTTGAGGAACTTGAGTATGTGATAAGGGAAAGTGAGGTGAATATCAGGGGCTCAAGTGTAAATGGTTGAAGGCTAGGATTGTGTCAAGGAAAATAAGTGAATATTTGGGCCTTGGATATAAATAGTTGAGGCGTATGTCAGTGTTGAGTGATGAGGCCTTGGGTGTAAATGTTGGTCAGGGGTCAACATACAAATATTGGATAAAAGAAGCATTAAGACCTCGAGTATAAATGGTCAAGGGTCGATGTGATGAGTCTTGAGGCAAGTATTGGAGCATTGGGTACAAATGGTCAAGGGTCAAATGTCGAGTTCTTTAGAGAAGTATTGAGACCTTGGGTTTAATTGTTCAATGGTCAATTCGTCTGAATAGACTAAGTCTTGAAGATGTGGAAGATATTGAATAGAGTTGGGAAGAGCTAGAGAGAGTTATGAGAACTTAGTGATGTTTAAGAGAGATCGTTAGAGCTTGACTTAAAGGATGGATATTCACGGCATGAGCATTGTGTATGATATGATTATGATTCATGTTTGTTGTGACAAGCATGATGCTGTGATCTTGTATGCTATTGAAAGTTTAGGGTGAAAATTGATACAAATTGCCAAGTAAAATTTTATTTTTTCCCAAAAACATTTATTAGATGCATTATAAATAGAACAGTTAATAAACTGCAGGTGAATCCTTGAGAATTAGAGATAAGAACCTTTCTAACCAAAACAATCTCTAATTCACTAACACTATCAATGTTTTAAATATTGATGTCAATGGAAATGTCGAGGTCTCAATTTTACATAAACATCAATGAGAGTATCCACAAAATATCGATGTCAATTTATATTTCTGAAAAAATATAGAAATAAAAAATTCATAATAATGTTTAATATAACTAATAAGGATTTTACTATTCTGCAATGATGTTGCTTAAACAGGTAACCTAGATATGATTCTCAATGGATGCACCACACCTACTGCGTGCTTCTTCTCAAATTCCAGGTTATCTATTCCTAGCCGCCCTGCTATCTCACGTACTTCTAAATGCAGTATGCAAGCTACTAGCGTTAGGAGTTCATGGGAACCTCGTTTAGAGCATCAGACATGTTTCTATAGAGGTGCATATGAAACCTTTCACAATCTTTATTTACCTTTTCTTTGATCTTTATGTTGAAACAATTATTACTGTGGTGGAGAAGTTGATGAAAGGAAATTATTGTCCGACTTTTGTGACACTGGCATCTTGAAGAATGATACCATCCTTATTAATTCAATGAATGATGTGCATACATTCTCTAATTCATTATTTTTCAATTGTAGGTCTCTTACCCTTAAAACTAGGTGCTGTATCTTCCCCTCTCCTAAGCGGGGATCTAGGTGGCTTGCTACATACAGTCCCAAGGTTACCAAGGCAAAAAAGTATCAGCATGACGCCACGAGCAGCCAAAGATGTCCCTACGAGTTTTCGTTTCCCTCCGATGACCACAAAACCAAAATGGTGGTGGAGGACATTAGCTTGCCTACCCTACCTAATGCCCCTTCACGAAACGTGGATGTATGCCGAAACAGCGTACCACCTACACCCGTTCCTGGAGGACTTTGAGTTCTTGACATATCCCTTTCTTGGAGCCATTGGTAGACTACCAAGTTGGTTCTTAATGGCATACTTTTTCGTTGCCTATCTAGGAGTTGTAAGACGAAAGGAATGGCCACACTTCTTTAGATTTCACGTTGTTATGGGCATGTTGTTGGAGATTGCCCTGCAAGTGATTGGTACGGTGAGTCGTTGGATGCCTCTTGCAGTCTATTGGGGTAAATTAGGGATGCACTTCTGGACAGCCGTAGCGTTTGCTTACCTATTCACGGTCTTGGAATGCATACGCTGTGCTCTTGCAGGCATGTATGCTGATATCCCCTTTGTCTGTGATGCAGCCTACATTCAAATTCCATATGATTAAGAACTCTTCGGTTTATAGTCTCGGTTCGAGTAGATGATGTAGACATGTAAGTTTGCTACTGCCTTTGTAAAGTGCAGTCGGAAATTAACATCAAACATTTGGAGGATGACCATCTCTTTATTTACTCTATTGGCACTTTTGTTTGTTACAATCTTTGTCTTTGTAGAAATTGAGGATTTTGTATGGAAGAGTTTGTGGGCAAAGTAAAGAAGGAAATTCATCCTCACTGGCTTCTGTGGGTAAGTTTGTTCTCACTTTCAAACTTCTCTGCTTTCTTTGTGGACTATGTTTTATTTACGATCGTTTCATTCGATTATAATGCAGAATTGTTCTAACTTTTAGCCATCATTTTCTGGTTGTGACTTTTCATTTAGAATCATATTCAGAATCCTTGATTAATTGATACAAAATCCATGAGATTCTAAGCAAATTTCATAAATATATCTCTCTATTCATCTACAATAATCTCTAAAGTTCTATTCCCACAGCAAAAATGGAATCAAATGATACATTTTGAACACCTAACGAACAATAGTTAGTCAAAGTGAGCATAGTTTAGTGATAATTGACATGTATCTTTGATCAAGAGGTTAGAGGTTTAAATTCTCTTACCTCAAATGTTGTTAACTGAAAAAAGAAAAGAAAAAAAAAGAGACAATATCTTTGAAAGGCATTTTTTTTTTCGAGTACATCAGCTTGGAAGGCATACTTTCAGGTAAAATTTGATAATGTAAATGATTTAACGATATCCTCAAAGATGAAATAAATGGTAATAATGATTTTTTATATAGTTGTAAATAATATTGAGTACATCTAGTATTTGGAAAAGATATTTTTTTGGAACAATGTCAAAGTTTAATGATATTTTTTCTTTAAAGTTCAAGGATAAAAATGAAACTTTTCCAAGTTTTAAGGATATAATTGAAATATACTCCAAAATTTAGGAGTATTGTGTATAACTTTAACCTAAATTAAATTATTCACTCTGACCTTTCCACTGCTTGACTTTCACCACTGAACAAACACAATCAGTGGGCTTTTTTTTTTTTTTTTGGAATAAATCAGTGGGCTTGTGTTTCCATAGTTTTCTTGCATATTATCATATTCCATATCTGGTTAAGTCATGCTTAAAAGTTTCACTATATCACATGCTTCAGTTAAATATTTAAGAACATCTCTGCATTGTTATATATTTTTTTAAAAAATTATTGTAATCTCTATACTTTTGTTAATTGGTCAAATTCTTCCAAACAATCATCGTCTTTATACTAAAATATAATTGTCCCACAAAATAAAATATTTGAAAAGTAAGCAACTAAAATAGAAATTTCAACGTTAAAAGAGCAAAAGGTTAAATTACATAAACTTAGTCTTGGAACCTTTAGGATTGTGTCTAATAGGTCATCAAATCTTAAAAAACCATCAAGTATATTTTTAAGCTTTTAAATTTTGTGTCTAAATAGGTCTTAAAAATTTTACAAAGTGTCTAATAGTTCTTTGTACTTTGAATTTTGTATCTAATTAGTTTATGACCTATAACCTACTTGACATTTTAAAAATTTCATGAGCTTATTAGATTAAAAAAAAAGTGTTATGAGATTAACCGTCGAGGTCCATGGGCTTCGGTCCAATCCAGCCCACTGATCCATAAAAGAGGAAAATCTCCTTGACCAGTACATCAAAACCAAGTCGAGGCGGAATACCAATTACCAAAAGGGGAACACGACCTACACCGAGTTGATTGTCAATCGGGCTGAGGCACTTGTCCTCACTCCCCTTACTCATTGTACGTCCTCAACATCCATGTTGAAAAAAGTATAATTGAGGAACCCGTCCCACTAATGAGGTACACAATACAACTCTAACTCAAATCAATATTATTTCAAACTAAGTACTAAGCATTGAAGCGTATTAGACACAACACCATACCAATGTGAGTTCTTACCTGCAGGTGAGCTTCAACATCTAGATCAACTATCCACATGACCGAACCGATCTGTCCTCATAGATCAGAATCTCACCTCAACAAAAAAGTTTAGAACTTATTTCACCCTATTAGAGCTTAAAAACCTATATATTAGACACAATAATGAATATTCAAGACTATATTAAAGGAAAAAGAAAGAAAACATTGACAATCACATCAAAGTTAAAATAAAATAAAGAGCCAATCAAAGAAAAAAGCAAGAGGAATCAAAATAATTTTGATCAATGTAAGGTCTTGAACATCCTCCACATTATTTTATGTACAGAGAAAGAGATTGAGCTTCAACCCGTGACTCCCAAGTTCCAACAACAGACTGGTTCTTCACGTGAAACATCTCAAAAAAAAAAAAAAAAAAACTTAACAAAAACAACAAAACAATCTTCAAAATCCAAACTTTTCCCTTCCTATAAGAACCCCATCTCTTCCTCACCTTCAAAACATCTTCAAATCTTCAAAAAAGCTTCAAATTTTTCCTTTTCTTCTGCAACAATGGCGTCCAACAAGGTTTTGGTGGCAGTTCTGTTGTTGGTCGCCGTCGTTCTTCTGGGCGGCGCCACCGCCTCTCCGCTCTGTAAGATCGACACCACTGACCTCGGCGTTTGCCGCCCGGCGGTGACCACGCCCGCGCACGGCCAGCCTCTGCCGCTGCCGACCGACGAGTGCTGCGCGGTGGTCCGCCGTGCTGACCTTAAGTGTCTTTGCAACCTCAAGTCTTTGCTTCCGGCTATGGGGATTGACACTGCCAATGCCATGGCTTTGCCCACCAAATGTGGCCTCCCACTCCCGACCGAGTGCCATGTTTAGATCTCGTTTGGTAACGTTTTTGTTTCGAATTTTTTAAATAAAGATTCCCCATTTTTGGAAAATATGATAAGAATCTTGGTTTTTCTATGATCTCTTGATTCAAACTATGGTTTTATCTTTTTTTTTTTTTTTATATCCGTGAGTGTCCGGGCCAGCTTAGACGCACCTCAACTAAAACTATGGTTTTATCTTCATGAACTATTTTTAAATATTAGTGGACTCTATGTCATTTTTTAAATAATGGTGATATAGCGATCAATGAATAATATTCTTTATTTTAAAATTGTATATAATTTTGATACCATCATGATTTATGAGCTACATATATTGACTCTTCTCCTTTTCTCTATCTACATGGCAGGTCTATGAAGGGTCTTGTGTTGGAAAGTGAAGTGATCTTTGATCATGGGCATGTATTTTGAATTTTTCTTCATTGTAATGTACTTTTCTTCATAGTTTTAAGAAGTGGGATACTATAAGTTGTAACCTCTACTTTTGATTTTAGATGGCAAGAGATTGATTGATTTCATTTGTTTGTCCAACCATATGTCATGCATAGTTATACGGTTTTCAACTAATATGATATGATGGTTAGTTGTAAAAATAGAGGTTACAACTTATGTACTCAAAAAAAAAAAATAAAATAAATAAATAGAGGTTACAACTTACAAATGGAAACAGATGATAGTTGGAGGATTGATATAT

mRNA sequence

CTTTTCTTCTTCCTCCCGCCTCACGTCTCCAGCCCATCTCCGGTCAGTCTCCTCCTCCTTCGACGTCAGCAGCTGCTCCTCCAACCTGCGACCCAGACCGGCAGCGATGTGTGTGGAGTAACCCACGCGACGGCGGACTCGAGCAGTCTTCTTCTCCGGCGCGAGCACCTATCACGAACCGCTACGCACGCGCAGCGAACTCTCCTGGCGACGAGCGGCGGCGCAAGAGTCTGTAGTGTGACGGAACCTCGAACGACGGACCCACGGGGCGCAAGCTCATCTGTTCGACGACCACGAATTGGCGAGGACGAACCTCCATCTCCGACAGCCAGATCTGTTCCTGACAACTTGGAACTGCAAGCAACGTGATTTCTCCCCTGAGGCAACATTCGGCAGCAATCCACAACCTGAAGGGCCTCAAGGATTAGTGGGTTTGCACTGTTCGAATTCAAGTTTAAGGTTGACGTTGGATAAGAAAAAGTAACCTAGATATGATTCTCAATGGATGCACCACACCTACTGCGTGCTTCTTCTCAAATTCCAGGTTATCTATTCCTAGCCGCCCTGCTATCTCACGTACTTCTAAATGCAGTATGCAAGCTACTAGCGTTAGGAGTTCATGGGAACCTCGTTTAGAGCATCAGACATGTTTCTATAGAGGTCTCTTACCCTTAAAACTAGGTGCTGTATCTTCCCCTCTCCTAAGCGGGGATCTAGGTGGCTTGCTACATACAGTCCCAAGGTTACCAAGGCAAAAAAGTATCAGCATGACGCCACGAGCAGCCAAAGATGTCCCTACGAGTTTTCGTTTCCCTCCGATGACCACAAAACCAAAATGGTGGTGGAGGACATTAGCTTGCCTACCCTACCTAATGCCCCTTCACGAAACGTGGATGTATGCCGAAACAGCGTACCACCTACACCCGTTCCTGGAGGACTTTGAGTTCTTGACATATCCCTTTCTTGGAGCCATTGGTAGACTACCAAGTTGGTTCTTAATGGCATACTTTTTCGTTGCCTATCTAGGAGTTGTAAGACGAAAGGAATGGCCACACTTCTTTAGATTTCACGTTGTTATGGGCATGTTGTTGGAGATTGCCCTGCAAGTGATTGGTACGGTGAGTCGTTGGATGCCTCTTGCAGTCTATTGGGGTAAATTAGGGATGCACTTCTGGACAGCCGTAGCGTTTGCTTACCTATTCACGGTCTTGGAATGCATACGCTGTGCTCTTGCAGGCATGTATGCTGATATCCCCTTTGTCTGTGATGCAGCCTACATTCAAATTCCATATGATTAAGAACTCTTCGGTTTATAGTCTCGGTTCGAGTAGATGATGTAGACATAAATTGAGGATTTTGTATGGAAGAGTTTGTGGGCAAAGTAAAGAAGGAAATTCATCCTCACTGGCTTCTGTGGGTCTATGAAGGGTCTTGTGTTGGAAAGTGAAGTGATCTTTGATCATGGGCATGTATTTTGAATTTTTCTTCATTGTAATGTACTTTTCTTCATAGTTTTAAGAAGTGGGATACTATAAGTTGTAACCTCTACTTTTGATTTTAGATGGCAAGAGATTGATTGATTTCATTTGTTTGTCCAACCATATGTCATGCATAGTTATACGGTTTTCAACTAATATGATATGATGGTTAGTTGTAAAAATAGAGGTTACAACTTATGTACTCAAAAAAAAAAAATAAAATAAATAAATAGAGGTTACAACTTACAAATGGAAACAGATGATAGTTGGAGGATTGATATAT

Coding sequence (CDS)

ATGATTCTCAATGGATGCACCACACCTACTGCGTGCTTCTTCTCAAATTCCAGGTTATCTATTCCTAGCCGCCCTGCTATCTCACGTACTTCTAAATGCAGTATGCAAGCTACTAGCGTTAGGAGTTCATGGGAACCTCGTTTAGAGCATCAGACATGTTTCTATAGAGGTCTCTTACCCTTAAAACTAGGTGCTGTATCTTCCCCTCTCCTAAGCGGGGATCTAGGTGGCTTGCTACATACAGTCCCAAGGTTACCAAGGCAAAAAAGTATCAGCATGACGCCACGAGCAGCCAAAGATGTCCCTACGAGTTTTCGTTTCCCTCCGATGACCACAAAACCAAAATGGTGGTGGAGGACATTAGCTTGCCTACCCTACCTAATGCCCCTTCACGAAACGTGGATGTATGCCGAAACAGCGTACCACCTACACCCGTTCCTGGAGGACTTTGAGTTCTTGACATATCCCTTTCTTGGAGCCATTGGTAGACTACCAAGTTGGTTCTTAATGGCATACTTTTTCGTTGCCTATCTAGGAGTTGTAAGACGAAAGGAATGGCCACACTTCTTTAGATTTCACGTTGTTATGGGCATGTTGTTGGAGATTGCCCTGCAAGTGATTGGTACGGTGAGTCGTTGGATGCCTCTTGCAGTCTATTGGGGTAAATTAGGGATGCACTTCTGGACAGCCGTAGCGTTTGCTTACCTATTCACGGTCTTGGAATGCATACGCTGTGCTCTTGCAGGCATGTATGCTGATATCCCCTTTGTCTGTGATGCAGCCTACATTCAAATTCCATATGATTAA

Protein sequence

MILNGCTTPTACFFSNSRLSIPSRPAISRTSKCSMQATSVRSSWEPRLEHQTCFYRGLLPLKLGAVSSPLLSGDLGGLLHTVPRLPRQKSISMTPRAAKDVPTSFRFPPMTTKPKWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVLECIRCALAGMYADIPFVCDAAYIQIPYD

Homology

[Close]

BLAST of Lcy12g009870 vs. ExPASy Swiss-Prot
Match: Q8GZ79 (Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-I PE=1 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 3.3e-104
Identity = 196/280 (70.00%), Postives = 220/280 (78.57%), Query Frame = 0


Query: 2   ILNGCTTPTACFFSNSRL--SIPSRPAISRTSKCSMQAT--SVRSSWE---------PRL 61
           ++ G +TP+A    +SR   S   R A  +T     +++   V++SW          PR+
Sbjct: 1   MITGYSTPSAHVLMSSRAFKSSSYRAAAGQTQHYLARSSLPVVKNSWGSPPSPFNELPRV 60

Query: 62  EHQTCFYRGLLPLKLGAVSSPLLSGDLGGLLHTVPRLPRQKSISMTPRAAKDVPTSFRFP 121
                  RG+    L A SS LL+G+ G L  T+P LP ++   +TPRA+KDVP+SFRFP
Sbjct: 61  S------RGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFP 120

Query: 122 PMTTKPKWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWF 181
           PMT KP+WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWF
Sbjct: 121 PMTKKPQWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWF 180

Query: 182 LMAYFFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFW 241
           LMAYFFVAYLG+VRRKEWPHFFRFHVVMGMLLEIALQVIGTVS+WMPL VYWGK GMHFW
Sbjct: 181 LMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFW 240

Query: 242 TAVAFAYLFTVLECIRCALAGMYADIPFVCDAAYIQIPYD 269
           TAVAFAYLFTVLE IRCALAGMYADIPFVCDAAYIQIPYD
Sbjct: 241 TAVAFAYLFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 274

[Close]

BLAST of Lcy12g009870 vs. ExPASy Swiss-Prot
Match: Q9ZST8 (Protein TIC 20, chloroplastic OS=Pisum sativum OX=3888 GN=TIC20 PE=1 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 6.6e-84
Identity = 157/268 (58.58%), Postives = 187/268 (69.78%), Query Frame = 0


Query: 1   MILNGCTTPTACFFSNSRLSIPSRPAISRTSKCSMQATSVRSSWEPRLEHQTCFYRGLLP 60
           MI NG T         +   IP++ A+S          S+RS W   LE++    RG+  
Sbjct: 1   MIQNGGTVSQGSVLCYA-CQIPAKVAVS----------SIRSFWGHSLENKP---RGMTF 60

Query: 61  LKLGAVSSPLLSGDLGGLLHTVPRLPRQKSISMTPRAAKDVPTSFRFPPMTTKPKWWWRT 120
             + A SS LLSG    L  T+P LP     S TPRA KD  + FRFPPMT KP+WWWRT
Sbjct: 61  TDMSATSSLLLSGGQNFLSRTIPVLPTLHKSSTTPRATKD-SSGFRFPPMTKKPRWWWRT 120

Query: 121 LACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLGV 180
           L+C+PYL+P H+ WMYA TAYHLHPF+  F+ +TYPFL AIG LP W L+AYF +AYL +
Sbjct: 121 LSCIPYLLPFHQAWMYARTAYHLHPFIPYFQPMTYPFLMAIGTLPRWSLIAYFLIAYLTI 180

Query: 181 VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVL 240
           VRRKEWPHFFRFHV +GML+EIALQV G VSRWMP + YWGKLGMHFWT   F +LFT +
Sbjct: 181 VRRKEWPHFFRFHVAVGMLIEIALQVTGIVSRWMPRSFYWGKLGMHFWTTAFFVFLFTTI 240

Query: 241 ECIRCALAGMYADIPFVCDAAYIQIPYD 269
           ECIRCAL GMYAD+PFVCDAAYIQIP++
Sbjct: 241 ECIRCALVGMYADVPFVCDAAYIQIPHE 253

[Close]

BLAST of Lcy12g009870 vs. ExPASy Swiss-Prot
Match: Q9ZQZ9 (Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-IV PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.5e-40
Identity = 103/259 (39.77%), Postives = 147/259 (56.76%), Query Frame = 0


Query: 8   TPTACFFSNSRLSIPSRPAISRTSKCSMQATSVRSSWEPRLEHQTCFYRGLLPLKLGAVS 67
           +P +  F N R+  P+   +  ++K  + A+S+ S   PR E         +     A S
Sbjct: 23  SPISKKFVNPRVFFPN---VDSSAKLRLSASSI-SRRCPR-EIAPLSATASVDFAAAATS 82

Query: 68  SPLLSGDLGGLLHTVPRLPRQKSISMTPRAAKDVPTSFRFPPMTTKPKWWWRTLACLPYL 127
           S  L  +  GL    P L R +      R AKD     + P +  +P+WWWRTLAC+PYL
Sbjct: 83  SNQLFAN--GLPPLAPGLRRHRRPIEPARVAKDDFFKIKLPKIAERPEWWWRTLACVPYL 142

Query: 128 MPLHETWMYAETAYHLHPFLEDFEF---LTYPFLGAIGRLPSWFLMAYFFVAYLGVVRRK 187
           + L      ++  +++ PFLE  +    + Y   GAI R P+WF M Y ++ Y+ VV+ K
Sbjct: 143 ISL----QISDVGFYVQPFLEKHDAIGDMIYFIPGAINRWPTWFFMVYCYLGYMWVVKNK 202

Query: 188 EWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVLECIR 247
           E PH+ RFH++MGMLLE ALQVI   S + PL  + G+ GM++W A+ F Y+  +LECIR
Sbjct: 203 ELPHYLRFHMMMGMLLETALQVIWCTSNFFPLIHFKGRFGMYYWMAIGFTYICLLLECIR 262

Query: 248 CALAGMYADIPFVCDAAYI 264
           CALAG+YA IPF+ DAA I
Sbjct: 263 CALAGVYAQIPFMTDAASI 270

[Close]

BLAST of Lcy12g009870 vs. ExPASy Swiss-Prot
Match: P73387 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1737 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.3e-04
Identity = 43/153 (28.10%), Postives = 71/153 (46.41%), Query Frame = 0


Query: 119 RTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYL 178
           R  + L Y++PL + +M+        P L+       P L    + P +     F V ++
Sbjct: 12  RFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFP-FASFIIFIVLFM 71

Query: 179 GVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFT 238
            VVR     HF RF+ +  +L+ I L + G +  ++   V+    G+   T   FA+L  
Sbjct: 72  AVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVF--GQGLVTETLYNFAFL-G 131

Query: 239 VLEC----IRCALAGMYADIPFVCDAAYIQIPY 268
            L C    I  ++ G YA+IP + DAAY Q+ +
Sbjct: 132 ALACGFFGIVQSVLGRYAEIPTISDAAYSQVRF 160

[Close]

BLAST of Lcy12g009870 vs. ExPASy TrEMBL
Match: A0A6J1DDV0 (Protein TIC 20 OS=Momordica charantia OX=3673 GN=LOC111019474 PE=3 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 1.5e-139
Identity = 240/268 (89.55%), Postives = 247/268 (92.16%), Query Frame = 0


Query: 1   MILNGCTTPTACFFSNSRLSIPSRPAISRTSKCSMQATSVRSSWEPRLEHQTCFYRGLLP 60
           MILNGCTTPT   FSNSR  IPSR   SRT  CSMQ   +RSSWEPRLEHQTCF +GLLP
Sbjct: 1   MILNGCTTPTGWCFSNSRFCIPSRSTASRTPGCSMQTARIRSSWEPRLEHQTCFSKGLLP 60

Query: 61  LKLGAVSSPLLSGDLGGLLHTVPRLPRQKSISMTPRAAKDVPTSFRFPPMTTKPKWWWRT 120
           LKL A SSPLLSGDLGGLLHT+PRLPRQK I MTP+A+KDVPTSFRFPPMTTKPKWWWRT
Sbjct: 61  LKLRAASSPLLSGDLGGLLHTIPRLPRQKRIGMTPQASKDVPTSFRFPPMTTKPKWWWRT 120

Query: 121 LACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLGV 180
           LACLPYLMPLHETWMYAETAYHLHPFLEDFEF TYPFLGAIGRLPSWFLMAYFFVAYLGV
Sbjct: 121 LACLPYLMPLHETWMYAETAYHLHPFLEDFEFATYPFLGAIGRLPSWFLMAYFFVAYLGV 180

Query: 181 VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVL 240
           VRRKEWPHF RFHVVMGMLLEIALQVIGTVSRWMPLAVYWGK GMHFWTAV+FAYLFTVL
Sbjct: 181 VRRKEWPHFLRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVSFAYLFTVL 240

Query: 241 ECIRCALAGMYADIPFVCDAAYIQIPYD 269
           ECIRCALAGMYADIPF+CDAAYIQIPYD
Sbjct: 241 ECIRCALAGMYADIPFICDAAYIQIPYD 268

[Close]

BLAST of Lcy12g009870 vs. ExPASy TrEMBL
Match: A0A6J1DBI9 (Protein TIC 20 OS=Momordica charantia OX=3673 GN=LOC111019474 PE=3 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 3.7e-138
Identity = 240/269 (89.22%), Postives = 247/269 (91.82%), Query Frame = 0


Query: 1   MILNGCTTPTACFFSNSRLSIPSRPAISRTSKCSMQATSVRSSWEPRLEHQTCFYR-GLL 60
           MILNGCTTPT   FSNSR  IPSR   SRT  CSMQ   +RSSWEPRLEHQTCF + GLL
Sbjct: 1   MILNGCTTPTGWCFSNSRFCIPSRSTASRTPGCSMQTARIRSSWEPRLEHQTCFSKVGLL 60

Query: 61  PLKLGAVSSPLLSGDLGGLLHTVPRLPRQKSISMTPRAAKDVPTSFRFPPMTTKPKWWWR 120
           PLKL A SSPLLSGDLGGLLHT+PRLPRQK I MTP+A+KDVPTSFRFPPMTTKPKWWWR
Sbjct: 61  PLKLRAASSPLLSGDLGGLLHTIPRLPRQKRIGMTPQASKDVPTSFRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLG 180
           TLACLPYLMPLHETWMYAETAYHLHPFLEDFEF TYPFLGAIGRLPSWFLMAYFFVAYLG
Sbjct: 121 TLACLPYLMPLHETWMYAETAYHLHPFLEDFEFATYPFLGAIGRLPSWFLMAYFFVAYLG 180

Query: 181 VVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTV 240
           VVRRKEWPHF RFHVVMGMLLEIALQVIGTVSRWMPLAVYWGK GMHFWTAV+FAYLFTV
Sbjct: 181 VVRRKEWPHFLRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVSFAYLFTV 240

Query: 241 LECIRCALAGMYADIPFVCDAAYIQIPYD 269
           LECIRCALAGMYADIPF+CDAAYIQIPYD
Sbjct: 241 LECIRCALAGMYADIPFICDAAYIQIPYD 269

[Close]

BLAST of Lcy12g009870 vs. ExPASy TrEMBL
Match: A0A5A7TDM5 (Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003090 PE=3 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 2.6e-136
Identity = 227/268 (84.70%), Postives = 251/268 (93.66%), Query Frame = 0


Query: 1   MILNGCTTPTACFFSNSRLSIPSRPAISRTSKCSMQATSVRSSWEPRLEHQTCFYRGLLP 60
           MILNGCTTPT CFFSNS+LSIPSR +I R  +CS Q  S+RSSWEP L+HQTC+Y GLLP
Sbjct: 1   MILNGCTTPTGCFFSNSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60

Query: 61  LKLGAVSSPLLSGDLGGLLHTVPRLPRQKSISMTPRAAKDVPTSFRFPPMTTKPKWWWRT 120
           LKL A SSPLLSGDLGGLL T+PRLP +K+ISMTPRA+KDVPTS+R+PPMTTKPKWWWRT
Sbjct: 61  LKLNAASSPLLSGDLGGLLSTIPRLPGKKNISMTPRASKDVPTSYRYPPMTTKPKWWWRT 120

Query: 121 LACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLGV 180
           LACLPYLMPLHETWMY ETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFL+AYFFVAYLGV
Sbjct: 121 LACLPYLMPLHETWMYGETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLIAYFFVAYLGV 180

Query: 181 VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVL 240
           VRRKEWPHF RFHVVMGML+EI+LQVIGT+SRW+P++VYWGKLGMHFWTAV FAY+FTVL
Sbjct: 181 VRRKEWPHFLRFHVVMGMLMEISLQVIGTMSRWLPISVYWGKLGMHFWTAVCFAYMFTVL 240

Query: 241 ECIRCALAGMYADIPFVCDAAYIQIPYD 269
           EC+RCALAGMYAD+PFVC+AAYIQIP+D
Sbjct: 241 ECMRCALAGMYADVPFVCNAAYIQIPFD 268

[Close]

BLAST of Lcy12g009870 vs. ExPASy TrEMBL
Match: A0A1S3CAY7 (Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103498780 PE=3 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 2.6e-136
Identity = 227/268 (84.70%), Postives = 251/268 (93.66%), Query Frame = 0


Query: 1   MILNGCTTPTACFFSNSRLSIPSRPAISRTSKCSMQATSVRSSWEPRLEHQTCFYRGLLP 60
           MILNGCTTPT CFFSNS+LSIPSR +I R  +CS Q  S+RSSWEP L+HQTC+Y GLLP
Sbjct: 1   MILNGCTTPTGCFFSNSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60

Query: 61  LKLGAVSSPLLSGDLGGLLHTVPRLPRQKSISMTPRAAKDVPTSFRFPPMTTKPKWWWRT 120
           LKL A SSPLLSGDLGGLL T+PRLP +K+ISMTPRA+KDVPTS+R+PPMTTKPKWWWRT
Sbjct: 61  LKLNAASSPLLSGDLGGLLSTIPRLPGKKNISMTPRASKDVPTSYRYPPMTTKPKWWWRT 120

Query: 121 LACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLGV 180
           LACLPYLMPLHETWMY ETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFL+AYFFVAYLGV
Sbjct: 121 LACLPYLMPLHETWMYGETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLIAYFFVAYLGV 180

Query: 181 VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVL 240
           VRRKEWPHF RFHVVMGML+EI+LQVIGT+SRW+P++VYWGKLGMHFWTAV FAY+FTVL
Sbjct: 181 VRRKEWPHFLRFHVVMGMLMEISLQVIGTMSRWLPISVYWGKLGMHFWTAVCFAYMFTVL 240

Query: 241 ECIRCALAGMYADIPFVCDAAYIQIPYD 269
           EC+RCALAGMYAD+PFVC+AAYIQIP+D
Sbjct: 241 ECMRCALAGMYADVPFVCNAAYIQIPFD 268

[Close]

BLAST of Lcy12g009870 vs. ExPASy TrEMBL
Match: A0A6J1H4H9 (Protein TIC 20 OS=Cucurbita moschata OX=3662 GN=LOC111460323 PE=3 SV=1)

HSP 1 Score: 488.0 bits (1255), Expect = 2.5e-134
Identity = 230/269 (85.50%), Postives = 251/269 (93.31%), Query Frame = 0


Query: 1   MILNGCTTPTACFFSNSRLSIPSRPAISRTSKCSMQ-ATSVRSSWEPRLEHQTCFYRGLL 60
           MILNGCTTPT  FFSNSRLSIP+R AISR+S CSM  A S+RSS EP LEHQTC YRG+ 
Sbjct: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSSDCSMHAAASIRSSREPHLEHQTCRYRGVF 60

Query: 61  PLKLGAVSSPLLSGDLGGLLHTVPRLPRQKSISMTPRAAKDVPTSFRFPPMTTKPKWWWR 120
           PLKLGA SS  LSGDLGGLLHT+PRLPR++++SMTPRAAKD+PTS+RFPPMTTKPKWWWR
Sbjct: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVSMTPRAAKDIPTSYRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLG 180
           TLACLPYLMP HETWMY+ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFL+AYFF+AYLG
Sbjct: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180

Query: 181 VVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTV 240
           +VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGK+GMHFWTAV+FAYLFTV
Sbjct: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240

Query: 241 LECIRCALAGMYADIPFVCDAAYIQIPYD 269
           LE +RCALAGMYADIPF CDAAYIQIPYD
Sbjct: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 269

[Close]

BLAST of Lcy12g009870 vs. NCBI nr
Match: XP_038875339.1 (protein TIC 20-I, chloroplastic [Benincasa hispida] >XP_038875340.1 protein TIC 20-I, chloroplastic [Benincasa hispida] >XP_038875341.1 protein TIC 20-I, chloroplastic [Benincasa hispida] >XP_038875342.1 protein TIC 20-I, chloroplastic [Benincasa hispida])

HSP 1 Score: 513.5 bits (1321), Expect = 1.1e-141
Identity = 245/269 (91.08%), Postives = 253/269 (94.05%), Query Frame = 0


Query: 1   MILNGCTTPTACFFSNSRLSIPSRPAISRTSKCSMQATSVRSSWEPRLEHQTCFYRGLLP 60
           MILNGCTTPT CFFSNS+LSIP R AISR+  CSMQ  S+RSSWEPRLEHQTC+YRGLLP
Sbjct: 1   MILNGCTTPTGCFFSNSKLSIPGRSAISRSPHCSMQTASIRSSWEPRLEHQTCYYRGLLP 60

Query: 61  LKLGAVSSPLLSGDLGGLLHTVPRLPRQKSISM-TPRAAKDVPTSFRFPPMTTKPKWWWR 120
           LKL A SSPLLSGDLGGLLH +PRLPRQK I M TP+AAKDVPTSFRFPPMTTKPKWWWR
Sbjct: 61  LKLRAASSPLLSGDLGGLLHMIPRLPRQKKIGMTTPQAAKDVPTSFRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLG 180
           TLACLPYLMPLHETWMYAETAYHLHPFLE+FE  TYPFLGAIGRLPSWFLMAYFFVAYLG
Sbjct: 121 TLACLPYLMPLHETWMYAETAYHLHPFLEEFELFTYPFLGAIGRLPSWFLMAYFFVAYLG 180

Query: 181 VVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTV 240
           VVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTV
Sbjct: 181 VVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTV 240

Query: 241 LECIRCALAGMYADIPFVCDAAYIQIPYD 269
           LE IRCALAGMYAD+PFVCDAAYIQIPYD
Sbjct: 241 LESIRCALAGMYADVPFVCDAAYIQIPYD 269

[Close]

BLAST of Lcy12g009870 vs. NCBI nr
Match: XP_022151562.1 (protein TIC 20-I, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 505.4 bits (1300), Expect = 3.1e-139
Identity = 240/268 (89.55%), Postives = 247/268 (92.16%), Query Frame = 0


Query: 1   MILNGCTTPTACFFSNSRLSIPSRPAISRTSKCSMQATSVRSSWEPRLEHQTCFYRGLLP 60
           MILNGCTTPT   FSNSR  IPSR   SRT  CSMQ   +RSSWEPRLEHQTCF +GLLP
Sbjct: 1   MILNGCTTPTGWCFSNSRFCIPSRSTASRTPGCSMQTARIRSSWEPRLEHQTCFSKGLLP 60

Query: 61  LKLGAVSSPLLSGDLGGLLHTVPRLPRQKSISMTPRAAKDVPTSFRFPPMTTKPKWWWRT 120
           LKL A SSPLLSGDLGGLLHT+PRLPRQK I MTP+A+KDVPTSFRFPPMTTKPKWWWRT
Sbjct: 61  LKLRAASSPLLSGDLGGLLHTIPRLPRQKRIGMTPQASKDVPTSFRFPPMTTKPKWWWRT 120

Query: 121 LACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLGV 180
           LACLPYLMPLHETWMYAETAYHLHPFLEDFEF TYPFLGAIGRLPSWFLMAYFFVAYLGV
Sbjct: 121 LACLPYLMPLHETWMYAETAYHLHPFLEDFEFATYPFLGAIGRLPSWFLMAYFFVAYLGV 180

Query: 181 VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVL 240
           VRRKEWPHF RFHVVMGMLLEIALQVIGTVSRWMPLAVYWGK GMHFWTAV+FAYLFTVL
Sbjct: 181 VRRKEWPHFLRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVSFAYLFTVL 240

Query: 241 ECIRCALAGMYADIPFVCDAAYIQIPYD 269
           ECIRCALAGMYADIPF+CDAAYIQIPYD
Sbjct: 241 ECIRCALAGMYADIPFICDAAYIQIPYD 268

[Close]

BLAST of Lcy12g009870 vs. NCBI nr
Match: XP_022151560.1 (protein TIC 20-I, chloroplastic isoform X1 [Momordica charantia] >XP_022151561.1 protein TIC 20-I, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 500.7 bits (1288), Expect = 7.6e-138
Identity = 240/269 (89.22%), Postives = 247/269 (91.82%), Query Frame = 0


Query: 1   MILNGCTTPTACFFSNSRLSIPSRPAISRTSKCSMQATSVRSSWEPRLEHQTCFYR-GLL 60
           MILNGCTTPT   FSNSR  IPSR   SRT  CSMQ   +RSSWEPRLEHQTCF + GLL
Sbjct: 1   MILNGCTTPTGWCFSNSRFCIPSRSTASRTPGCSMQTARIRSSWEPRLEHQTCFSKVGLL 60

Query: 61  PLKLGAVSSPLLSGDLGGLLHTVPRLPRQKSISMTPRAAKDVPTSFRFPPMTTKPKWWWR 120
           PLKL A SSPLLSGDLGGLLHT+PRLPRQK I MTP+A+KDVPTSFRFPPMTTKPKWWWR
Sbjct: 61  PLKLRAASSPLLSGDLGGLLHTIPRLPRQKRIGMTPQASKDVPTSFRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLG 180
           TLACLPYLMPLHETWMYAETAYHLHPFLEDFEF TYPFLGAIGRLPSWFLMAYFFVAYLG
Sbjct: 121 TLACLPYLMPLHETWMYAETAYHLHPFLEDFEFATYPFLGAIGRLPSWFLMAYFFVAYLG 180

Query: 181 VVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTV 240
           VVRRKEWPHF RFHVVMGMLLEIALQVIGTVSRWMPLAVYWGK GMHFWTAV+FAYLFTV
Sbjct: 181 VVRRKEWPHFLRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVSFAYLFTV 240

Query: 241 LECIRCALAGMYADIPFVCDAAYIQIPYD 269
           LECIRCALAGMYADIPF+CDAAYIQIPYD
Sbjct: 241 LECIRCALAGMYADIPFICDAAYIQIPYD 269

[Close]

BLAST of Lcy12g009870 vs. NCBI nr
Match: XP_008459737.1 (PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis melo] >KAA0039751.1 protein TIC 20-I [Cucumis melo var. makuwa] >TYK24746.1 protein TIC 20-I [Cucumis melo var. makuwa])

HSP 1 Score: 494.6 bits (1272), Expect = 5.4e-136
Identity = 227/268 (84.70%), Postives = 251/268 (93.66%), Query Frame = 0


Query: 1   MILNGCTTPTACFFSNSRLSIPSRPAISRTSKCSMQATSVRSSWEPRLEHQTCFYRGLLP 60
           MILNGCTTPT CFFSNS+LSIPSR +I R  +CS Q  S+RSSWEP L+HQTC+Y GLLP
Sbjct: 1   MILNGCTTPTGCFFSNSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60

Query: 61  LKLGAVSSPLLSGDLGGLLHTVPRLPRQKSISMTPRAAKDVPTSFRFPPMTTKPKWWWRT 120
           LKL A SSPLLSGDLGGLL T+PRLP +K+ISMTPRA+KDVPTS+R+PPMTTKPKWWWRT
Sbjct: 61  LKLNAASSPLLSGDLGGLLSTIPRLPGKKNISMTPRASKDVPTSYRYPPMTTKPKWWWRT 120

Query: 121 LACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLGV 180
           LACLPYLMPLHETWMY ETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFL+AYFFVAYLGV
Sbjct: 121 LACLPYLMPLHETWMYGETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLIAYFFVAYLGV 180

Query: 181 VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVL 240
           VRRKEWPHF RFHVVMGML+EI+LQVIGT+SRW+P++VYWGKLGMHFWTAV FAY+FTVL
Sbjct: 181 VRRKEWPHFLRFHVVMGMLMEISLQVIGTMSRWLPISVYWGKLGMHFWTAVCFAYMFTVL 240

Query: 241 ECIRCALAGMYADIPFVCDAAYIQIPYD 269
           EC+RCALAGMYAD+PFVC+AAYIQIP+D
Sbjct: 241 ECMRCALAGMYADVPFVCNAAYIQIPFD 268

[Close]

BLAST of Lcy12g009870 vs. NCBI nr
Match: XP_022959308.1 (protein TIC 20-I, chloroplastic-like [Cucurbita moschata] >XP_022959309.1 protein TIC 20-I, chloroplastic-like [Cucurbita moschata] >XP_022959310.1 protein TIC 20-I, chloroplastic-like [Cucurbita moschata] >XP_022959311.1 protein TIC 20-I, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 488.0 bits (1255), Expect = 5.1e-134
Identity = 230/269 (85.50%), Postives = 251/269 (93.31%), Query Frame = 0


Query: 1   MILNGCTTPTACFFSNSRLSIPSRPAISRTSKCSMQ-ATSVRSSWEPRLEHQTCFYRGLL 60
           MILNGCTTPT  FFSNSRLSIP+R AISR+S CSM  A S+RSS EP LEHQTC YRG+ 
Sbjct: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSSDCSMHAAASIRSSREPHLEHQTCRYRGVF 60

Query: 61  PLKLGAVSSPLLSGDLGGLLHTVPRLPRQKSISMTPRAAKDVPTSFRFPPMTTKPKWWWR 120
           PLKLGA SS  LSGDLGGLLHT+PRLPR++++SMTPRAAKD+PTS+RFPPMTTKPKWWWR
Sbjct: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVSMTPRAAKDIPTSYRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLG 180
           TLACLPYLMP HETWMY+ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFL+AYFF+AYLG
Sbjct: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180

Query: 181 VVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTV 240
           +VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGK+GMHFWTAV+FAYLFTV
Sbjct: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240

Query: 241 LECIRCALAGMYADIPFVCDAAYIQIPYD 269
           LE +RCALAGMYADIPF CDAAYIQIPYD
Sbjct: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 269

[Close]

BLAST of Lcy12g009870 vs. TAIR 10
Match: AT1G04940.1 (translocon at the inner envelope membrane of chloroplasts 20 )

HSP 1 Score: 379.4 bits (973), Expect = 2.4e-105
Identity = 196/280 (70.00%), Postives = 220/280 (78.57%), Query Frame = 0


Query: 2   ILNGCTTPTACFFSNSRL--SIPSRPAISRTSKCSMQAT--SVRSSWE---------PRL 61
           ++ G +TP+A    +SR   S   R A  +T     +++   V++SW          PR+
Sbjct: 1   MITGYSTPSAHVLMSSRAFKSSSYRAAAGQTQHYLARSSLPVVKNSWGSPPSPFNELPRV 60

Query: 62  EHQTCFYRGLLPLKLGAVSSPLLSGDLGGLLHTVPRLPRQKSISMTPRAAKDVPTSFRFP 121
                  RG+    L A SS LL+G+ G L  T+P LP ++   +TPRA+KDVP+SFRFP
Sbjct: 61  S------RGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFP 120

Query: 122 PMTTKPKWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWF 181
           PMT KP+WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWF
Sbjct: 121 PMTKKPQWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWF 180

Query: 182 LMAYFFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFW 241
           LMAYFFVAYLG+VRRKEWPHFFRFHVVMGMLLEIALQVIGTVS+WMPL VYWGK GMHFW
Sbjct: 181 LMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFW 240

Query: 242 TAVAFAYLFTVLECIRCALAGMYADIPFVCDAAYIQIPYD 269
           TAVAFAYLFTVLE IRCALAGMYADIPFVCDAAYIQIPYD
Sbjct: 241 TAVAFAYLFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 274

[Close]

BLAST of Lcy12g009870 vs. TAIR 10
Match: AT1G04945.3 (HIT-type Zinc finger family protein )

HSP 1 Score: 336.7 bits (862), Expect = 1.8e-92
Identity = 176/260 (67.69%), Postives = 200/260 (76.92%), Query Frame = 0


Query: 2   ILNGCTTPTACFFSNSRL--SIPSRPAISRTSKCSMQAT--SVRSSWE---------PRL 61
           ++ G +TP+A    +SR   S   R A  +T     +++   V++SW          PR+
Sbjct: 1   MITGYSTPSAHVLMSSRAFKSSSYRAAAGQTQHYLARSSLPVVKNSWGSPPSPFNELPRV 60

Query: 62  EHQTCFYRGLLPLKLGAVSSPLLSGDLGGLLHTVPRLPRQKSISMTPRAAKDVPTSFRFP 121
                  RG+    L A SS LL+G+ G L  T+P LP ++   +TPRA+KDVP+SFRFP
Sbjct: 61  S------RGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFP 120

Query: 122 PMTTKPKWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWF 181
           PMT KP+WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWF
Sbjct: 121 PMTKKPQWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWF 180

Query: 182 LMAYFFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFW 241
           LMAYFFVAYLG+VRRKEWPHFFRFHVVMGMLLEIALQVIGTVS+WMPL VYWGK GMHFW
Sbjct: 181 LMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFW 240

Query: 242 TAVAFAYLFTVLECIRCALA 249
           TAVAFAYLFTVLE IRCALA
Sbjct: 241 TAVAFAYLFTVLESIRCALA 254

[Close]

BLAST of Lcy12g009870 vs. TAIR 10
Match: AT4G03320.1 (translocon at the inner envelope membrane of chloroplasts 20-IV )

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-41
Identity = 103/259 (39.77%), Postives = 147/259 (56.76%), Query Frame = 0


Query: 8   TPTACFFSNSRLSIPSRPAISRTSKCSMQATSVRSSWEPRLEHQTCFYRGLLPLKLGAVS 67
           +P +  F N R+  P+   +  ++K  + A+S+ S   PR E         +     A S
Sbjct: 23  SPISKKFVNPRVFFPN---VDSSAKLRLSASSI-SRRCPR-EIAPLSATASVDFAAAATS 82

Query: 68  SPLLSGDLGGLLHTVPRLPRQKSISMTPRAAKDVPTSFRFPPMTTKPKWWWRTLACLPYL 127
           S  L  +  GL    P L R +      R AKD     + P +  +P+WWWRTLAC+PYL
Sbjct: 83  SNQLFAN--GLPPLAPGLRRHRRPIEPARVAKDDFFKIKLPKIAERPEWWWRTLACVPYL 142

Query: 128 MPLHETWMYAETAYHLHPFLEDFEF---LTYPFLGAIGRLPSWFLMAYFFVAYLGVVRRK 187
           + L      ++  +++ PFLE  +    + Y   GAI R P+WF M Y ++ Y+ VV+ K
Sbjct: 143 ISL----QISDVGFYVQPFLEKHDAIGDMIYFIPGAINRWPTWFFMVYCYLGYMWVVKNK 202

Query: 188 EWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVLECIR 247
           E PH+ RFH++MGMLLE ALQVI   S + PL  + G+ GM++W A+ F Y+  +LECIR
Sbjct: 203 ELPHYLRFHMMMGMLLETALQVIWCTSNFFPLIHFKGRFGMYYWMAIGFTYICLLLECIR 262

Query: 248 CALAGMYADIPFVCDAAYI 264
           CALAG+YA IPF+ DAA I
Sbjct: 263 CALAGVYAQIPFMTDAASI 270

The following BLAST results are available for this feature:

BLAST of Lcy12g009870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GZ79	3.3e-104	70.00	Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-I PE=1 ...	[more]
Q9ZST8	6.6e-84	58.58	Protein TIC 20, chloroplastic OS=Pisum sativum OX=3888 GN=TIC20 PE=1 SV=1	[more]
Q9ZQZ9	1.5e-40	39.77	Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-IV PE=...	[more]
P73387	2.3e-04	28.10	Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 ...	[more]

BLAST of Lcy12g009870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DDV0	1.5e-139	89.55	Protein TIC 20 OS=Momordica charantia OX=3673 GN=LOC111019474 PE=3 SV=1	[more]
A0A6J1DBI9	3.7e-138	89.22	Protein TIC 20 OS=Momordica charantia OX=3673 GN=LOC111019474 PE=3 SV=1	[more]
A0A5A7TDM5	2.6e-136	84.70	Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00309...	[more]
A0A1S3CAY7	2.6e-136	84.70	Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103498780 PE=3 SV=1	[more]
A0A6J1H4H9	2.5e-134	85.50	Protein TIC 20 OS=Cucurbita moschata OX=3662 GN=LOC111460323 PE=3 SV=1	[more]

BLAST of Lcy12g009870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875339.1	1.1e-141	91.08	protein TIC 20-I, chloroplastic [Benincasa hispida] >XP_038875340.1 protein TIC ...	[more]
XP_022151562.1	3.1e-139	89.55	protein TIC 20-I, chloroplastic isoform X2 [Momordica charantia]	[more]
XP_022151560.1	7.6e-138	89.22	protein TIC 20-I, chloroplastic isoform X1 [Momordica charantia] >XP_022151561.1...	[more]
XP_008459737.1	5.4e-136	84.70	PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis melo] >KAA0039751.1 pro...	[more]
XP_022959308.1	5.1e-134	85.50	protein TIC 20-I, chloroplastic-like [Cucurbita moschata] >XP_022959309.1 protei...	[more]

BLAST of Lcy12g009870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04940.1	2.4e-105	70.00	translocon at the inner envelope membrane of chloroplasts 20	[more]
AT1G04945.3	1.8e-92	67.69	HIT-type Zinc finger family protein	[more]
AT4G03320.1	1.1e-41	39.77	translocon at the inner envelope membrane of chloroplasts 20-IV	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005691	Chloroplast protein import component Tic20	TIGRFAM	TIGR00994	TIGR00994	coord: 1..268 e-value: 1.1E-123 score: 410.2
IPR005691	Chloroplast protein import component Tic20	PFAM	PF16166	TIC20	coord: 89..261 e-value: 6.8E-74 score: 247.6
IPR005691	Chloroplast protein import component Tic20	PANTHER	PTHR33510	PROTEIN TIC 20-II, CHLOROPLASTIC	coord: 1..268
None	No IPR available	PANTHER	PTHR33510:SF9	HIT-TYPE ZINC FINGER FAMILY PROTEIN-RELATED	coord: 1..268

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g009870.1	Lcy12g009870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane