Lcy12g009460 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g009460
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr12: 36291584 .. 36291922 (+)
RNA-Seq Expression	Lcy12g009460
Synteny	Lcy12g009460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAGGATTCAAAGAAGGCTCCCTAGCATTCTTCTTTCCCCCAGTAGATGTGTTATGTGTTGCAAAAATGAGGAGTCCATCCTTCACTTGATGATTCTCTACGGGTTTGTTAGTGAGACTTGGGATTCTTTCAGCAGGCTATTTGGTTGGCAAGGCTGTAAGCCTAATAGTAGGGAGAGTTGGCTGTCTGAGATTCTCCCAGGCTGGTTTTTGAAAGGCAAAGCTAGAGTTTTATGGAAAAATCCTGTCAGAGTTATCCTTTTGTGGAAGGAAAGGAGCGCGAGGATCTTCTCTGATAAGAACTCCTCTTTATCCAACTTTTCCGATCTTGAATAG

mRNA sequence

ATGGACAGGATTCAAAGAAGGCTCCCTAGCATTCTTCTTTCCCCCAGTAGATGTGTTATGTGTTGCAAAAATGAGGAGTCCATCCTTCACTTGATGATTCTCTACGGGTTTGTTAGTGAGACTTGGGATTCTTTCAGCAGGCTATTTGGTTGGCAAGGCTGTAAGCCTAATAGTAGGGAGAGTTGGCTGTCTGAGATTCTCCCAGGCTGGTTTTTGAAAGGCAAAGCTAGAGTTTTATGGAAAAATCCTGTCAGAGTTATCCTTTTGTGGAAGGAAAGGAGCGCGAGGATCTTCTCTGATAAGAACTCCTCTTTATCCAACTTTTCCGATCTTGAATAG

Coding sequence (CDS)

ATGGACAGGATTCAAAGAAGGCTCCCTAGCATTCTTCTTTCCCCCAGTAGATGTGTTATGTGTTGCAAAAATGAGGAGTCCATCCTTCACTTGATGATTCTCTACGGGTTTGTTAGTGAGACTTGGGATTCTTTCAGCAGGCTATTTGGTTGGCAAGGCTGTAAGCCTAATAGTAGGGAGAGTTGGCTGTCTGAGATTCTCCCAGGCTGGTTTTTGAAAGGCAAAGCTAGAGTTTTATGGAAAAATCCTGTCAGAGTTATCCTTTTGTGGAAGGAAAGGAGCGCGAGGATCTTCTCTGATAAGAACTCCTCTTTATCCAACTTTTCCGATCTTGAATAG

Protein sequence

MDRIQRRLPSILLSPSRCVMCCKNEESILHLMILYGFVSETWDSFSRLFGWQGCKPNSRESWLSEILPGWFLKGKARVLWKNPVRVILLWKERSARIFSDKNSSLSNFSDLE

Homology

[Close]

BLAST of Lcy12g009460 vs. ExPASy TrEMBL
Match: A0A803QGT5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.1e-06
Identity = 37/105 (35.24%), Postives = 49/105 (46.67%), Query Frame = 0


Query: 2    DRIQRRLPSILLSPSRCVMCCKNEESILHLMILYGFVSETWDSFSRLFGWQGCKPNSRES 61
            D +QRR P IL+SP  CV C  N E + HL +   F S+ W      FG     P S   
Sbjct: 1362 DVLQRRRPFILISPGWCVCCKSNGEEVEHLFLHCKFSSKLWSMLLEEFGLIWALPRSVPQ 1421

Query: 62   WLSEILPGWFLKGKARVLWKNPVRVIL--LWKERSARIFSDKNSS 105
             L   + G     +  +LWK  V   +  +W ER+ RIF D  +S
Sbjct: 1422 MLMSKIKG---SKRQDILWKTAVLATIWAIWLERNTRIFEDVENS 1463

[Close]

BLAST of Lcy12g009460 vs. ExPASy TrEMBL
Match: A0A803PZR8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.1e-06
Identity = 37/108 (34.26%), Postives = 51/108 (47.22%), Query Frame = 0


Query: 2   DRIQRRLPSILLSPSRCVMCCKNEESILHLMILYGFVSETWDSFSRLFGWQGCKPNSRES 61
           D +QRR P IL+SP  CV C  + E + HL +   F S+ W      FG     P S   
Sbjct: 156 DVLQRRRPFILISPGWCVSCKSSGEEVEHLFLHCKFSSKLWSMLLEEFGLIWALPRSVPQ 215

Query: 62  WLSEILPGWFLKGKARVLWKNPVRVIL--LWKERSARIFSDKNSSLSN 108
            L   + G     +  +LWK  V   +  +W ER+ RIF D  +SL +
Sbjct: 216 MLVSKIKG---SKRQDILWKTAVLATIWAIWLERNTRIFEDVENSLQS 260

[Close]

BLAST of Lcy12g009460 vs. ExPASy TrEMBL
Match: A5BY18 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_041975 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.6e-05
Identity = 37/108 (34.26%), Postives = 50/108 (46.30%), Query Frame = 0


Query: 2    DRIQRRLPSILLSPSRCVMCCKNEESILHLMILYGFVSETWDSFSRLFGWQGCKPNSRES 61
            D +Q R P   LSP  C +C ++EES  HL +      E W    +L       P S   
Sbjct: 1687 DLLQLRRPYKALSPDICKLCMRHEESTDHLFLHCSSTMELWHRLFQLAKTDWVPPMSISD 1746

Query: 62   WLSEILPGWFLKGKARVLWKNPVRVIL--LWKERSARIFSDKNSSLSN 108
             LS    G+ L     VLW+     I+  +W+ER+ARIF DK  +  N
Sbjct: 1747 MLSTNYNGFGLSKGGTVLWQATCIAIIWVVWRERNARIFEDKARNSEN 1794

[Close]

BLAST of Lcy12g009460 vs. ExPASy TrEMBL
Match: A0A438JK46 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_207 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.4e-05
Identity = 37/112 (33.04%), Postives = 51/112 (45.54%), Query Frame = 0


Query: 2   DRIQRRLPSILLSPSRCVMCCKNEESILHLMILYGFVSETWDSFSRLFGWQGCKPNSRES 61
           D++Q R P   L P  C++C  N ESI HL +L       W+   +L G     P S E 
Sbjct: 790 DKLQLRRPYKSLCPQWCILCKGNGESIDHLFLLCPVTIGLWNKLFKLAGLDWVPPRSFED 849

Query: 62  WLSEILPGWFLKGKARVLWKNP--VRVILLWKERSARIFSDKNSSLSNFSDL 112
            L     G     + + LW+      V ++W+ER+ RIF DK  S     DL
Sbjct: 850 MLVITFKGLGNSLRGKTLWQVACLTLVWIVWQERNNRIFEDKGRSEETLWDL 901

[Close]

BLAST of Lcy12g009460 vs. ExPASy TrEMBL
Match: A0A200R8H7 (Reverse transcriptase zinc-binding domain OS=Macleaya cordata OX=56857 GN=BVC80_8643g17 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.9e-05
Identity = 31/90 (34.44%), Postives = 47/90 (52.22%), Query Frame = 0


Query: 16  SRCVMCCKNEESILHLMILYGFVSETWDSFSRLFGWQGCKPNSRESWLSEILPGWFLKGK 75
           +RCV+C K+ ES+ HL++ Y F  E W+ F   FG Q    N      +E     F K +
Sbjct: 114 NRCVLCLKDSESVNHLLLNYPFTRELWEVFLHEFGVQWVFHNDVRRLFAERQVEHFTKAR 173

Query: 76  ARVLWKNPVRVILLWKERSARIFSDKNSSL 106
             +LW+      ++W +R+ RIF+DK   L
Sbjct: 174 -NLLWRFLAISWIIWLKRNDRIFNDKYKDL 202

[Close]

BLAST of Lcy12g009460 vs. NCBI nr
Match: XP_030479135.1 (uncharacterized protein LOC115696374 [Cannabis sativa])

HSP 1 Score: 61.2 bits (147), Expect = 6.4e-06
Identity = 37/105 (35.24%), Postives = 49/105 (46.67%), Query Frame = 0


Query: 2   DRIQRRLPSILLSPSRCVMCCKNEESILHLMILYGFVSETWDSFSRLFGWQGCKPNSRES 61
           D +QRR P IL+SP  CV C  N E + HL +   F S+ W      FG     P S   
Sbjct: 211 DVLQRRRPFILISPGWCVCCKSNGEEVEHLFLHCKFSSKLWSMLLEEFGLIWALPRSVPQ 270

Query: 62  WLSEILPGWFLKGKARVLWKNPVRVIL--LWKERSARIFSDKNSS 105
            L   + G     +  +LWK  V   +  +W ER+ RIF D  +S
Sbjct: 271 MLMSKIKG---SKRQDILWKTAVLATIWAIWLERNTRIFEDVENS 312

[Close]

BLAST of Lcy12g009460 vs. NCBI nr
Match: XP_030505044.1 (uncharacterized protein LOC115720016 [Cannabis sativa])

HSP 1 Score: 60.8 bits (146), Expect = 8.4e-06
Identity = 37/108 (34.26%), Postives = 51/108 (47.22%), Query Frame = 0


Query: 2   DRIQRRLPSILLSPSRCVMCCKNEESILHLMILYGFVSETWDSFSRLFGWQGCKPNSRES 61
           D +QRR P IL+SP  CV C  + E + HL +   F S+ W      FG     P S   
Sbjct: 156 DVLQRRRPFILISPGWCVSCKSSGEEVEHLFLHCKFSSKLWSMLLEEFGLIWALPRSVPQ 215

Query: 62  WLSEILPGWFLKGKARVLWKNPVRVIL--LWKERSARIFSDKNSSLSN 108
            L   + G     +  +LWK  V   +  +W ER+ RIF D  +SL +
Sbjct: 216 MLVSKIKG---SKRQDILWKTAVLATIWAIWLERNTRIFEDVENSLQS 260

[Close]

BLAST of Lcy12g009460 vs. NCBI nr
Match: CAN70693.1 (hypothetical protein VITISV_041975 [Vitis vinifera])

HSP 1 Score: 58.2 bits (139), Expect = 5.4e-05
Identity = 37/108 (34.26%), Postives = 50/108 (46.30%), Query Frame = 0


Query: 2    DRIQRRLPSILLSPSRCVMCCKNEESILHLMILYGFVSETWDSFSRLFGWQGCKPNSRES 61
            D +Q R P   LSP  C +C ++EES  HL +      E W    +L       P S   
Sbjct: 1687 DLLQLRRPYKALSPDICKLCMRHEESTDHLFLHCSSTMELWHRLFQLAKTDWVPPMSISD 1746

Query: 62   WLSEILPGWFLKGKARVLWKNPVRVIL--LWKERSARIFSDKNSSLSN 108
             LS    G+ L     VLW+     I+  +W+ER+ARIF DK  +  N
Sbjct: 1747 MLSTNYNGFGLSKGGTVLWQATCIAIIWVVWRERNARIFEDKARNSEN 1794

[Close]

BLAST of Lcy12g009460 vs. NCBI nr
Match: RVX09324.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 57.8 bits (138), Expect = 7.1e-05
Identity = 37/112 (33.04%), Postives = 51/112 (45.54%), Query Frame = 0


Query: 2   DRIQRRLPSILLSPSRCVMCCKNEESILHLMILYGFVSETWDSFSRLFGWQGCKPNSRES 61
           D++Q R P   L P  C++C  N ESI HL +L       W+   +L G     P S E 
Sbjct: 790 DKLQLRRPYKSLCPQWCILCKGNGESIDHLFLLCPVTIGLWNKLFKLAGLDWVPPRSFED 849

Query: 62  WLSEILPGWFLKGKARVLWKNP--VRVILLWKERSARIFSDKNSSLSNFSDL 112
            L     G     + + LW+      V ++W+ER+ RIF DK  S     DL
Sbjct: 850 MLVITFKGLGNSLRGKTLWQVACLTLVWIVWQERNNRIFEDKGRSEETLWDL 901

[Close]

BLAST of Lcy12g009460 vs. NCBI nr
Match: CAN82456.1 (hypothetical protein VITISV_010028 [Vitis vinifera])

HSP 1 Score: 57.4 bits (137), Expect = 9.3e-05
Identity = 35/111 (31.53%), Postives = 52/111 (46.85%), Query Frame = 0


Query: 2    DRIQRRLPSILLSPSRCVMCCKNEESILHLMILYGFVSETWDSFSRLFGWQGCKPNSRES 61
            D +Q R P   LSP  C +C K+ +++ HL +        W    +L       P S   
Sbjct: 3980 DLLQLRRPYKALSPDICKLCMKHGKTVBHLFLHCSLTMGLWHRLFQLXKTDWVPPRSISD 4039

Query: 62   WLSEILPGWFLKGKARVLWKNPVRVIL--LWKERSARIFSDKNSSLSNFSD 111
             LS    G+    +  VLW++    I+  +W+ER+ARIF DK  +  NF D
Sbjct: 4040 MLSINFNGFGSSKRGVVLWQDACIAIMWVVWRERNARIFEDKTRNSXNFWD 4090

The following BLAST results are available for this feature:

BLAST of Lcy12g009460 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g009460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A803QGT5	3.1e-06	35.24	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803PZR8	4.1e-06	34.26	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A5BY18	2.6e-05	34.26	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]
A0A438JK46	3.4e-05	33.04	LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF...	[more]
A0A200R8H7	5.9e-05	34.44	Reverse transcriptase zinc-binding domain OS=Macleaya cordata OX=56857 GN=BVC80_...	[more]

BLAST of Lcy12g009460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030479135.1	6.4e-06	35.24	uncharacterized protein LOC115696374 [Cannabis sativa]	[more]
XP_030505044.1	8.4e-06	34.26	uncharacterized protein LOC115720016 [Cannabis sativa]	[more]
CAN70693.1	5.4e-05	34.26	hypothetical protein VITISV_041975 [Vitis vinifera]	[more]
RVX09324.1	7.1e-05	33.04	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]
CAN82456.1	9.3e-05	31.53	hypothetical protein VITISV_010028 [Vitis vinifera]	[more]

BLAST of Lcy12g009460 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g009460.1	Lcy12g009460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0046483	heterocycle metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:1901360	organic cyclic compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0016740	transferase activity