Lcy12g008540 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g008540
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr12: 34629395 .. 34629703 (-)
RNA-Seq ExpressionLcy12g008540
SyntenyLcy12g008540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCACAACGACGATGCCCTCTACTTTTCCTCCTCCTCTCCTTGCTCGCCATCTCCTGTTTCTCCACGATCGCGGCAACTTCAAGGGCCATGCTCGTTGCTAAAGAAGACCCTGTTGCGACGATTTCCAAGGCAGGAGAAATGAACGACTTCAACCTCCTCTCGATTATTCCTACTAAAATGGGTGCGAGCCCACCGATATCCCTTAAGGCTCTCGAAGATTGCAAGCCCAAAGGCATCTTTATGTGGTCTGCTCCTAGCCCTTTGAGAAACAATGTTTTGTGCAAGACAATTGCCAAACCCTAG

mRNA sequence

ATGGCCGCACAACGACGATGCCCTCTACTTTTCCTCCTCCTCTCCTTGCTCGCCATCTCCTGTTTCTCCACGATCGCGGCAACTTCAAGGGCCATGCTCGTTGCTAAAGAAGACCCTGTTGCGACGATTTCCAAGGCAGGAGAAATGAACGACTTCAACCTCCTCTCGATTATTCCTACTAAAATGGGTGCGAGCCCACCGATATCCCTTAAGGCTCTCGAAGATTGCAAGCCCAAAGGCATCTTTATGTGGTCTGCTCCTAGCCCTTTGAGAAACAATGTTTTGTGCAAGACAATTGCCAAACCCTAG

Coding sequence (CDS)

ATGGCCGCACAACGACGATGCCCTCTACTTTTCCTCCTCCTCTCCTTGCTCGCCATCTCCTGTTTCTCCACGATCGCGGCAACTTCAAGGGCCATGCTCGTTGCTAAAGAAGACCCTGTTGCGACGATTTCCAAGGCAGGAGAAATGAACGACTTCAACCTCCTCTCGATTATTCCTACTAAAATGGGTGCGAGCCCACCGATATCCCTTAAGGCTCTCGAAGATTGCAAGCCCAAAGGCATCTTTATGTGGTCTGCTCCTAGCCCTTTGAGAAACAATGTTTTGTGCAAGACAATTGCCAAACCCTAG

Protein sequence

MAAQRRCPLLFLLLSLLAISCFSTIAATSRAMLVAKEDPVATISKAGEMNDFNLLSIIPTKMGASPPISLKALEDCKPKGIFMWSAPSPLRNNVLCKTIAKP
Homology
[Close]
BLAST of Lcy12g008540 vs. NCBI nr
Match: KAE8646224.1 (hypothetical protein Csa_016535 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 5.1e-10
Identity = 48/97 (49.48%), Postives = 56/97 (57.73%), Query Frame = 0 

Query: 3  AQRRCPLLFLLLSLLAISCFSTIA-ATSRAMLVAKEDPVATISKAGEMNDFNLLSIIPTK 62
          A  RC L+F L+SLLA+S FST   ATSR+ML         IS+     +          
Sbjct: 2  ASVRCTLVFFLISLLALSYFSTTTMATSRSML--------RISQKHTTEESVFDVPFNDN 61

Query: 63 MGASPPISLKALEDCKPKGIFMWSAPSPLRNNVLCKT 99
          MGASP I +  L DCKPKG   WSAPSPLRN VLC+T
Sbjct: 62 MGASPSIPVGGLIDCKPKGFIRWSAPSPLRNTVLCQT 90

[Close]
BLAST of Lcy12g008540 vs. NCBI nr
Match: KAG6595583.1 (hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.8 bits (146), Expect = 7.6e-06
Identity = 38/89 (42.70%), Postives = 49/89 (55.06%), Query Frame = 0 

Query: 9  LLFLLLSLLAISCFSTIAATSRAML---VAKEDPVATISKAGEMNDFNLLSIIPTKMGAS 68
          L  +   L+ IS  STI ATSR ML     +  P   + K    NDF+ LS +P    A 
Sbjct: 9  LTIIFFLLIVISSPSTIIATSRHMLALDTKESPPQPPMDKPPTSNDFDTLS-LPNGTKAM 68

Query: 69 PPISLKALEDCKPKGIFMWSAPSPLRNNV 95
          PP+   A+  CKPKG   WS+PSP+RNN+
Sbjct: 69 PPMPESAVRSCKPKGPVRWSSPSPIRNNL 96

The following BLAST results are available for this feature:
BLAST of Lcy12g008540 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy12g008540 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy12g008540 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646224.15.1e-1049.48hypothetical protein Csa_016535 [Cucumis sativus][more]
KAG6595583.17.6e-0642.70hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lcy12g008540 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..21
score: 6.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g008540.1Lcy12g008540.1mRNA