Lcy12g008350 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g008350
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Secretion protein HlyD family protein
Location	Chr12: 34323097 .. 34323610 (-)
RNA-Seq Expression	Lcy12g008350
Synteny	Lcy12g008350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTCGCAAGGGTTACAATCTAGGAGACCTGAGGATGAGTTGGGATTCAAGGACCCATCTCAAGGCATCAAGGATGTCCAACAACACCTTCGCGATGTGAGTTCCAAGAACATTCTTTTTCCCATGCTCTTATAGGCATTAACTGACCATTTACTAACTTGATTTTACTCTCTTTGGTATAGACTTTCACGAAGGTCACTGCCTCTTCAGTTAGCTTGGCTAACAAGATCAACAAGCTTCAACTGAACAGTGTTCTCAGGAGCGAACTTACACACAGGCTCAAGCAAGGCTTGACCAAGCTAACCGTCTGCTAGAGGAGGTTAGGGCCAAACTGAGCTCTAGGGAGGCCGAGTTGGATATGGTGAAGGCCCAACTGAAGGAAGCTAAGGCTCACTTGACCGATACCAACTATCTTGCTGAGGAGTTTAGGAAGACCAATGAATTTTACGCCATGCAGGATGAAATTTGGAATGGCGGCATCAAGATTTGGCAAACGTCATCCTACTATTAA

mRNA sequence

ATGTGCTCGCAAGGGTTACAATCTAGGAGACCTGAGGATGAGTTGGGATTCAAGGACCCATCTCAAGGCATCAAGGATGTCCAACAACACCTTCGCGATTGTTCTCAGGAGCGAACTTACACACAGGCTCAAGCAAGGCTTGACCAAGCTAACCGTCTGCTAGAGGAGGTTAGGGCCAAACTGAGCTCTAGGGAGGCCGAGTTGGATATGGTGAAGGCCCAACTGAAGGAAGCTAAGGCTCACTTGACCGATACCAACTATCTTGCTGAGGAGTTTAGGAAGACCAATGAATTTTACGCCATGCAGGATGAAATTTGGAATGGCGGCATCAAGATTTGGCAAACGTCATCCTACTATTAA

Coding sequence (CDS)

ATGTGCTCGCAAGGGTTACAATCTAGGAGACCTGAGGATGAGTTGGGATTCAAGGACCCATCTCAAGGCATCAAGGATGTCCAACAACACCTTCGCGATTGTTCTCAGGAGCGAACTTACACACAGGCTCAAGCAAGGCTTGACCAAGCTAACCGTCTGCTAGAGGAGGTTAGGGCCAAACTGAGCTCTAGGGAGGCCGAGTTGGATATGGTGAAGGCCCAACTGAAGGAAGCTAAGGCTCACTTGACCGATACCAACTATCTTGCTGAGGAGTTTAGGAAGACCAATGAATTTTACGCCATGCAGGATGAAATTTGGAATGGCGGCATCAAGATTTGGCAAACGTCATCCTACTATTAA

Protein sequence

MCSQGLQSRRPEDELGFKDPSQGIKDVQQHLRDCSQERTYTQAQARLDQANRLLEEVRAKLSSREAELDMVKAQLKEAKAHLTDTNYLAEEFRKTNEFYAMQDEIWNGGIKIWQTSSYY

Homology

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BLAST of Lcy12g008350 vs. ExPASy TrEMBL
Match: A0A5A7SSF9 (Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G00750 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-04
Identity = 46/126 (36.51%), Postives = 65/126 (51.59%), Query Frame = 0


Query: 4   QGLQSRRPEDELGFKDPSQ----GIKDVQQHLRDCS---------QERTYTQAQAR--LD 63
           +GL     E E GF+DPSQ    G+ D ++     S             Y     R  L 
Sbjct: 179 RGLVEFPMEGESGFQDPSQGFILGLHDFRRAFTRFSISFGRMGDELNHLYLNYVPREELM 238

Query: 64  QANRLLEEVRAKL----SSREAELDMVKAQLKEAKAHLTDTNYLAEEFRKTNEFYAMQDE 111
           +ANR LEE + +L    +S + ++D +KAQL EAK+ L+D   LAE+F KT EF  MQ++
Sbjct: 239 RANRRLEEAKVELGLCQASSQVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQNK 298

[Close]

BLAST of Lcy12g008350 vs. ExPASy TrEMBL
Match: A0A5D3BQ22 (Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00610 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-04
Identity = 46/126 (36.51%), Postives = 65/126 (51.59%), Query Frame = 0


Query: 4   QGLQSRRPEDELGFKDPSQ----GIKDVQQHLRDCS---------QERTYTQAQAR--LD 63
           +GL     E E GF+DPSQ    G+ D ++     S             Y     R  L 
Sbjct: 128 RGLVEFPMEGESGFQDPSQGFILGLHDFRRAFTRFSISFGRMGDELNHLYLNYVPREELM 187

Query: 64  QANRLLEEVRAKL----SSREAELDMVKAQLKEAKAHLTDTNYLAEEFRKTNEFYAMQDE 111
           +ANR LEE + +L    +S + ++D +KAQL EAK+ L+D   LAE+F KT EF  MQ++
Sbjct: 188 RANRRLEEAKVELGLCQASSQVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQNK 247

[Close]

BLAST of Lcy12g008350 vs. ExPASy TrEMBL
Match: A0A1S3C5B2 (uncharacterized protein LOC103497199 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497199 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-04
Identity = 46/126 (36.51%), Postives = 65/126 (51.59%), Query Frame = 0


Query: 4   QGLQSRRPEDELGFKDPSQ----GIKDVQQHLRDCS---------QERTYTQAQAR--LD 63
           +GL     E E GF+DPSQ    G+ D ++     S             Y     R  L 
Sbjct: 189 RGLVEFPMEGESGFQDPSQGFILGLHDFRRAFTRFSISFGRMGDELNHLYLNYVPREELM 248

Query: 64  QANRLLEEVRAKL----SSREAELDMVKAQLKEAKAHLTDTNYLAEEFRKTNEFYAMQDE 111
           +ANR LEE + +L    +S + ++D +KAQL EAK+ L+D   LAE+F KT EF  MQ++
Sbjct: 249 RANRRLEEAKVELGLCQASSQVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQNK 308

[Close]

BLAST of Lcy12g008350 vs. ExPASy TrEMBL
Match: A0A1S4E2A9 (uncharacterized protein LOC103497199 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497199 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-04
Identity = 46/126 (36.51%), Postives = 65/126 (51.59%), Query Frame = 0


Query: 4   QGLQSRRPEDELGFKDPSQ----GIKDVQQHLRDCS---------QERTYTQAQAR--LD 63
           +GL     E E GF+DPSQ    G+ D ++     S             Y     R  L 
Sbjct: 144 RGLVEFPMEGESGFQDPSQGFILGLHDFRRAFTRFSISFGRMGDELNHLYLNYVPREELM 203

Query: 64  QANRLLEEVRAKL----SSREAELDMVKAQLKEAKAHLTDTNYLAEEFRKTNEFYAMQDE 111
           +ANR LEE + +L    +S + ++D +KAQL EAK+ L+D   LAE+F KT EF  MQ++
Sbjct: 204 RANRRLEEAKVELGLCQASSQVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQNK 263

[Close]

BLAST of Lcy12g008350 vs. ExPASy TrEMBL
Match: A0A1S3C5V5 (uncharacterized protein LOC103497199 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497199 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-04
Identity = 46/126 (36.51%), Postives = 65/126 (51.59%), Query Frame = 0


Query: 4   QGLQSRRPEDELGFKDPSQ----GIKDVQQHLRDCS---------QERTYTQAQAR--LD 63
           +GL     E E GF+DPSQ    G+ D ++     S             Y     R  L 
Sbjct: 156 RGLVEFPMEGESGFQDPSQGFILGLHDFRRAFTRFSISFGRMGDELNHLYLNYVPREELM 215

Query: 64  QANRLLEEVRAKL----SSREAELDMVKAQLKEAKAHLTDTNYLAEEFRKTNEFYAMQDE 111
           +ANR LEE + +L    +S + ++D +KAQL EAK+ L+D   LAE+F KT EF  MQ++
Sbjct: 216 RANRRLEEAKVELGLCQASSQVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQNK 275

[Close]

BLAST of Lcy12g008350 vs. NCBI nr
Match: XP_031737089.1 (uncharacterized protein LOC105435920 isoform X5 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-04
Identity = 46/126 (36.51%), Postives = 65/126 (51.59%), Query Frame = 0


Query: 4   QGLQSRRPEDELGFKDPSQ----GIKDVQQHLRDCS---------QERTYTQAQAR--LD 63
           +GL     E E GF+DPSQ    G+ D ++     S             Y     R  L 
Sbjct: 167 RGLVEFPTEGESGFQDPSQGFILGLHDFRRAFTRFSISFGRMGDELNHLYLNYVPREELM 226

Query: 64  QANRLLEEVRAKL----SSREAELDMVKAQLKEAKAHLTDTNYLAEEFRKTNEFYAMQDE 111
           +ANR LEE + +L    +S + ++D +KAQL EAK+ L+D   LAE+F KT EF  MQ++
Sbjct: 227 RANRRLEEAKVELGLCQASSQVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQNK 286

[Close]

BLAST of Lcy12g008350 vs. NCBI nr
Match: XP_031737075.1 (uncharacterized protein LOC105435920 isoform X1 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-04
Identity = 46/126 (36.51%), Postives = 65/126 (51.59%), Query Frame = 0


Query: 4   QGLQSRRPEDELGFKDPSQ----GIKDVQQHLRDCS---------QERTYTQAQAR--LD 63
           +GL     E E GF+DPSQ    G+ D ++     S             Y     R  L 
Sbjct: 198 RGLVEFPTEGESGFQDPSQGFILGLHDFRRAFTRFSISFGRMGDELNHLYLNYVPREELM 257

Query: 64  QANRLLEEVRAKL----SSREAELDMVKAQLKEAKAHLTDTNYLAEEFRKTNEFYAMQDE 111
           +ANR LEE + +L    +S + ++D +KAQL EAK+ L+D   LAE+F KT EF  MQ++
Sbjct: 258 RANRRLEEAKVELGLCQASSQVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQNK 317

[Close]

BLAST of Lcy12g008350 vs. NCBI nr
Match: XP_031737083.1 (uncharacterized protein LOC105435920 isoform X3 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-04
Identity = 46/126 (36.51%), Postives = 65/126 (51.59%), Query Frame = 0


Query: 4   QGLQSRRPEDELGFKDPSQ----GIKDVQQHLRDCS---------QERTYTQAQAR--LD 63
           +GL     E E GF+DPSQ    G+ D ++     S             Y     R  L 
Sbjct: 184 RGLVEFPTEGESGFQDPSQGFILGLHDFRRAFTRFSISFGRMGDELNHLYLNYVPREELM 243

Query: 64  QANRLLEEVRAKL----SSREAELDMVKAQLKEAKAHLTDTNYLAEEFRKTNEFYAMQDE 111
           +ANR LEE + +L    +S + ++D +KAQL EAK+ L+D   LAE+F KT EF  MQ++
Sbjct: 244 RANRRLEEAKVELGLCQASSQVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQNK 303

[Close]

BLAST of Lcy12g008350 vs. NCBI nr
Match: KGN66039.2 (hypothetical protein Csa_020117 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-04
Identity = 46/126 (36.51%), Postives = 65/126 (51.59%), Query Frame = 0


Query: 4   QGLQSRRPEDELGFKDPSQ----GIKDVQQHLRDCS---------QERTYTQAQAR--LD 63
           +GL     E E GF+DPSQ    G+ D ++     S             Y     R  L 
Sbjct: 183 RGLVEFPTEGESGFQDPSQGFILGLHDFRRAFTRFSISFGRMGDELNHLYLNYVPREELM 242

Query: 64  QANRLLEEVRAKL----SSREAELDMVKAQLKEAKAHLTDTNYLAEEFRKTNEFYAMQDE 111
           +ANR LEE + +L    +S + ++D +KAQL EAK+ L+D   LAE+F KT EF  MQ++
Sbjct: 243 RANRRLEEAKVELGLCQASSQVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQNK 302

[Close]

BLAST of Lcy12g008350 vs. NCBI nr
Match: XP_031737080.1 (uncharacterized protein LOC105435920 isoform X2 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-04
Identity = 46/126 (36.51%), Postives = 65/126 (51.59%), Query Frame = 0


Query: 4   QGLQSRRPEDELGFKDPSQ----GIKDVQQHLRDCS---------QERTYTQAQAR--LD 63
           +GL     E E GF+DPSQ    G+ D ++     S             Y     R  L 
Sbjct: 197 RGLVEFPTEGESGFQDPSQGFILGLHDFRRAFTRFSISFGRMGDELNHLYLNYVPREELM 256

Query: 64  QANRLLEEVRAKL----SSREAELDMVKAQLKEAKAHLTDTNYLAEEFRKTNEFYAMQDE 111
           +ANR LEE + +L    +S + ++D +KAQL EAK+ L+D   LAE+F KT EF  MQ++
Sbjct: 257 RANRRLEEAKVELGLCQASSQVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQNK 316

The following BLAST results are available for this feature:

BLAST of Lcy12g008350 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g008350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SSF9	2.4e-04	36.51	Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BQ22	2.4e-04	36.51	Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3C5B2	2.4e-04	36.51	uncharacterized protein LOC103497199 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4E2A9	2.4e-04	36.51	uncharacterized protein LOC103497199 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C5V5	2.4e-04	36.51	uncharacterized protein LOC103497199 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Lcy12g008350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737089.1	3.7e-04	36.51	uncharacterized protein LOC105435920 isoform X5 [Cucumis sativus]	[more]
XP_031737075.1	3.7e-04	36.51	uncharacterized protein LOC105435920 isoform X1 [Cucumis sativus]	[more]
XP_031737083.1	3.7e-04	36.51	uncharacterized protein LOC105435920 isoform X3 [Cucumis sativus]	[more]
KGN66039.2	3.7e-04	36.51	hypothetical protein Csa_020117 [Cucumis sativus]	[more]
XP_031737080.1	3.7e-04	36.51	uncharacterized protein LOC105435920 isoform X2 [Cucumis sativus]	[more]

BLAST of Lcy12g008350 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 40..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	SUPERFAMILY	69985	Colicin E3 receptor domain	coord: 36..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g008350.1	Lcy12g008350.1	mRNA