Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGTGGGGGGGCGTTGTCCAGCAGGGGACTGCTTACGGACCCAATCGAGTGGCCAGGAGGAACACTGTGTATGGAGGTCGCCCCCTATTAGGGAGCTGAAGCTTAATATCGATGCTTCTGTCAGGCCTGATACAGGGGAAGCTGGAGGTGGCTGTGTGCTGCATGGGGCTAATGGTGAGGTCTTTACGGCGGCCTGTTTGAGCTTGCAGAGGTGTTGGAGTGTGGATTTGGCTGAGGGTTGGGCTGTGTATAAAGGGGTCCAACTCGCTCGACAGTTGGGGTTTGCAGAATTTGTGGTGGAGACTGATTCTCTGAGGTTGGTCAAAATCCTTCATGGTGAGCTGCATGATGTGTCGGAAGTGGGGCTGCTGATGGATGACATCCGAGGAATCCTCCGTCCTTGGAACAACAGTAAGGTTTTGTTTACACCACGACAAGGAAACAAGGTGGCGCATGTCCTGGCTAGCTTGGCCTTTTCATATGTCGATCGTGTTTGGCTGGAAGAGTGGCCGAGCGAAATCTCTGATGTCCTGAGGAGTGATGCTGTTTCATCTCTATGA
mRNA sequence
ATGTTGGTGGGGGGGCGTTGTCCAGCAGGGGACTGCTTACGGACCCAATCGAGTGGCCAGGAGGAACACTGTGTATGGAGGTCGCCCCCTATTAGGGAGCTGAAGCTTAATATCGATGCTTCTGTCAGGCCTGATACAGGGGAAGCTGGAGGTGGCTGTGTGCTGCATGGGGCTAATGGTGAGGTCTTTACGGCGGCCTGTTTGAGCTTGCAGAGGTGTTGGAGTGTGGATTTGGCTGAGGGTTGGGCTGTGTATAAAGGGGTCCAACTCGCTCGACAGTTGGGGTTTGCAGAATTTGTGGTGGAGACTGATTCTCTGAGGTTGGTCAAAATCCTTCATGGTGAGCTGCATGATGTGTCGGAAGTGGGGCTGCTGATGGATGACATCCGAGGAATCCTCCGTCCTTGGAACAACAGTAAGGTTTTGTTTACACCACGACAAGGAAACAAGGTGGCGCATGTCCTGGCTAGCTTGGCCTTTTCATATGTCGATCGTGTTTGGCTGGAAGAGTGGCCGAGCGAAATCTCTGATGTCCTGAGGAGTGATGCTGTTTCATCTCTATGA
Coding sequence (CDS)
ATGTTGGTGGGGGGGCGTTGTCCAGCAGGGGACTGCTTACGGACCCAATCGAGTGGCCAGGAGGAACACTGTGTATGGAGGTCGCCCCCTATTAGGGAGCTGAAGCTTAATATCGATGCTTCTGTCAGGCCTGATACAGGGGAAGCTGGAGGTGGCTGTGTGCTGCATGGGGCTAATGGTGAGGTCTTTACGGCGGCCTGTTTGAGCTTGCAGAGGTGTTGGAGTGTGGATTTGGCTGAGGGTTGGGCTGTGTATAAAGGGGTCCAACTCGCTCGACAGTTGGGGTTTGCAGAATTTGTGGTGGAGACTGATTCTCTGAGGTTGGTCAAAATCCTTCATGGTGAGCTGCATGATGTGTCGGAAGTGGGGCTGCTGATGGATGACATCCGAGGAATCCTCCGTCCTTGGAACAACAGTAAGGTTTTGTTTACACCACGACAAGGAAACAAGGTGGCGCATGTCCTGGCTAGCTTGGCCTTTTCATATGTCGATCGTGTTTGGCTGGAAGAGTGGCCGAGCGAAATCTCTGATGTCCTGAGGAGTGATGCTGTTTCATCTCTATGA
Protein sequence
MLVGGRCPAGDCLRTQSSGQEEHCVWRSPPIRELKLNIDASVRPDTGEAGGGCVLHGANGEVFTAACLSLQRCWSVDLAEGWAVYKGVQLARQLGFAEFVVETDSLRLVKILHGELHDVSEVGLLMDDIRGILRPWNNSKVLFTPRQGNKVAHVLASLAFSYVDRVWLEEWPSEISDVLRSDAVSSL
Homology
BLAST of Lcy12g008150 vs. ExPASy TrEMBL
Match:
A0A6J1DBJ7 (uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018973 PE=4 SV=1)
HSP 1 Score: 121.7 bits (304), Expect = 3.2e-24
Identity = 68/163 (41.72%), Postives = 93/163 (57.06%), Query Frame = 0
Query: 25 VWRSPPIRELKLNIDASVRPDTGEAGGGCVLHGANGEVFTAACLSLQRCWSVDLAEGWAV 84
+WR P LK+N+DA+ R ++ AG G ++ + G V+ A L R VD EG+AV
Sbjct: 103 IWRPPAAPLLKVNVDAAFRKESFVAGVGVIIRDSTGLVYLTAIRLLARASDVDWVEGFAV 162
Query: 85 YKGVQLARQLGFAEFVVETDSLRLVKILHGELHDVSEVGLLMDDIRGILRPW-NNSKVLF 144
Y+G+ LA + GF F +ETDSLR+ +L + D SEVG+L I+ L F
Sbjct: 163 YEGILLAVEAGFIRFQIETDSLRIFNLLTTDCVDDSEVGVLCSVIKLFLSSHAERVSFSF 222
Query: 145 TPRQGNKVAHVLASLAFSYVD-RVWLEEWPSEISDVLRSDAVS 186
T R GN AH+LA LA + ++W+EEWP EIS VL D S
Sbjct: 223 THRNGNAXAHLLAQLALTSPHLQIWVEEWPDEISSVLAVDCRS 265
BLAST of Lcy12g008150 vs. ExPASy TrEMBL
Match:
V4UMR3 (RNase H domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10027161mg PE=4 SV=1)
HSP 1 Score: 108.6 bits (270), Expect = 2.8e-20
Identity = 56/159 (35.22%), Postives = 95/159 (59.75%), Query Frame = 0
Query: 26 WRSPPIRELKLNIDASVRPDTGEAGGGCVLHGANGEVFTAACLSLQRCWSVDLAEGWAVY 85
W+SPP K+N+DA+V AG G ++ + GEV A+ ++ ++ E AV+
Sbjct: 3 WQSPPPSWYKVNVDAAVSSTEDRAGIGVLVCNSTGEVMAASICTVIFSRDIEFVEAVAVH 62
Query: 86 KGVQLARQLGFAEFVVETDSLRLVKILHGELHDVSEVGLLMDDIRGILRPWNNS-KVLFT 145
G+QL +G A ++E+DS +V +++ ++H EVG L+ D++ +L +S +V F
Sbjct: 63 NGLQLVMDIGLAPAIIESDSFNVVNLINNKIHSRCEVGWLISDVQEVLSSSESSFQVKFA 122
Query: 146 PRQGNKVAHVLASLAF-SYVDRVWLEEWPSEISDVLRSD 183
PR N+VAH L+ LA + +++VWLEE P+EI+ + D
Sbjct: 123 PRSCNEVAHHLSKLALCNSMEKVWLEEVPTEIAAYVCKD 161
BLAST of Lcy12g008150 vs. ExPASy TrEMBL
Match:
A0A1R3HHY9 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_19197 PE=3 SV=1)
HSP 1 Score: 103.6 bits (257), Expect = 9.1e-19
Identity = 55/158 (34.81%), Postives = 87/158 (55.06%), Query Frame = 0
Query: 26 WRSPPIRELKLNIDASVRPDTGEAGGGCVLHGANGEVFTAACLSLQRCWSVDLAEGWAVY 85
W++PPI +K+N DAS + T G G V +GEV + L++ AE A
Sbjct: 709 WKAPPIGVVKVNFDASFQAATSLGGFGAVGRDGSGEVLGSIAGRLEQVADAFAAEAKAAV 768
Query: 86 KGVQLARQLGFAEFVVETDSLRLVKILHGELHDVSEVGLLMDDIRGILRPWNNSKVLFTP 145
K + AR++GF + +VE D+L ++K ++ L D+S +G+ ++++ +N+
Sbjct: 769 KAIIWAREMGFTDIIVEGDALIIIKKVNSTLEDLSPIGIYTEELKFYRSMFNSCSFHHVG 828
Query: 146 RQGNKVAHVLASLAFSYV-DRVWLEEWPSEISDVLRSD 183
R GN VAH LA+ S D VW+EE P I DVL++D
Sbjct: 829 RDGNGVAHALATYGISLTEDLVWMEEVPELILDVLKND 866
BLAST of Lcy12g008150 vs. ExPASy TrEMBL
Match:
A0A6P5S7Q3 (uncharacterized protein LOC110753261 OS=Prunus avium OX=42229 GN=LOC110753261 PE=4 SV=1)
HSP 1 Score: 102.8 bits (255), Expect = 1.6e-18
Identity = 61/168 (36.31%), Postives = 90/168 (53.57%), Query Frame = 0
Query: 21 EEHCVWRSPPIRELKLNIDASVRPDTGEAGGGCVLHGANGEVFTAACLSLQRCWSVDLAE 80
E+ W PP+ KLN+DA+ P+TG +G G V+ GEV A L L S AE
Sbjct: 54 EKPSKWSPPPVGRYKLNVDAAFIPETGVSGIGAVVRNDKGEVMAAMALPLANATSSKHAE 113
Query: 81 GWAVYKGVQLARQLGFAEFVVETDSLRLVK-ILHGELHDVSEVGLLMDDIRGILRPWNNS 140
A+ G+ AR GF+ F++E+DS +V + E + G L+DDI+ L+ +
Sbjct: 114 IMALQFGMNFARDAGFSSFLMESDSQGVVNDVKKDEEESWASDGHLIDDIKRSLQHFEEV 173
Query: 141 KVLFTPRQGNKVAHVLASLAFSYVDRV-WLEEWPSEISDVLRSDAVSS 187
+ F+PR+ N+VAH LA A + + V W+EE P + V+ D V S
Sbjct: 174 TISFSPRRCNQVAHFLARHALNCDNMVTWIEEVPFWLDSVVNDDIVVS 221
BLAST of Lcy12g008150 vs. ExPASy TrEMBL
Match:
A0A5C7ITL2 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_001058 PE=3 SV=1)
HSP 1 Score: 102.1 bits (253), Expect = 2.7e-18
Identity = 53/159 (33.33%), Postives = 86/159 (54.09%), Query Frame = 0
Query: 26 WRSPPIRELKLNIDASVRPDTGEAGGGCVLHGANGEVFTAACLSLQRCWSVDLAEGWAVY 85
W P + K+N DA+ R G +G GCV+ ++G V + C C+ +AE A+
Sbjct: 55 WSPPHVGCFKINSDAATRDRDGRSGVGCVIRDSDGYVRASLCQGFDVCYPPQVAETLAIL 114
Query: 86 KGVQLARQLGFAEFVVETDSLRLVKILHGELHDVSEVGLLMDDIRGILRPWNNSKVLFTP 145
G +LA +LG V+E+D+L +V+ + + +SEVG+++ DI I + + F P
Sbjct: 115 HGCRLAAELGLLPTVLESDALSVVEAVRLKSMPLSEVGVVIQDILEIFTSFPVFSICFVP 174
Query: 146 RQGNKVAHVLASLAFSYVDR-VWLEEWPSEISDVLRSDA 184
R NKV H LA LA +V R VW+ + P + ++ D+
Sbjct: 175 RLANKVVHGLARLAVGHVGRFVWVNDCPLAVESLVLGDS 213
BLAST of Lcy12g008150 vs. NCBI nr
Match:
XP_022150944.1 (uncharacterized protein LOC111018973 [Momordica charantia])
HSP 1 Score: 121.7 bits (304), Expect = 6.7e-24
Identity = 68/163 (41.72%), Postives = 93/163 (57.06%), Query Frame = 0
Query: 25 VWRSPPIRELKLNIDASVRPDTGEAGGGCVLHGANGEVFTAACLSLQRCWSVDLAEGWAV 84
+WR P LK+N+DA+ R ++ AG G ++ + G V+ A L R VD EG+AV
Sbjct: 103 IWRPPAAPLLKVNVDAAFRKESFVAGVGVIIRDSTGLVYLTAIRLLARASDVDWVEGFAV 162
Query: 85 YKGVQLARQLGFAEFVVETDSLRLVKILHGELHDVSEVGLLMDDIRGILRPW-NNSKVLF 144
Y+G+ LA + GF F +ETDSLR+ +L + D SEVG+L I+ L F
Sbjct: 163 YEGILLAVEAGFIRFQIETDSLRIFNLLTTDCVDDSEVGVLCSVIKLFLSSHAERVSFSF 222
Query: 145 TPRQGNKVAHVLASLAFSYVD-RVWLEEWPSEISDVLRSDAVS 186
T R GN AH+LA LA + ++W+EEWP EIS VL D S
Sbjct: 223 THRNGNAXAHLLAQLALTSPHLQIWVEEWPDEISSVLAVDCRS 265
BLAST of Lcy12g008150 vs. NCBI nr
Match:
KAF7825130.1 (putative RNA-directed DNA polymerase [Senna tora])
HSP 1 Score: 112.5 bits (280), Expect = 4.1e-21
Identity = 60/167 (35.93%), Postives = 102/167 (61.08%), Query Frame = 0
Query: 17 SSGQEEHCVWRSPPIRELKLNIDASVRPDTGEAGGGCVLHGANGEVFTAACLSLQRCWSV 76
++G EE WR+P RE+K+N+DAS++ + G++G CV+ G A + V
Sbjct: 503 NTGVEEE--WRAPSWREMKINVDASLK-EQGKSGISCVVRNYQGRCLAAFAKKIPNVDEV 562
Query: 77 DLAEGWAVYKGVQLARQLGFAEFVVETDSLRLVKILHGELHDVSEVGLLMDDIRGILRPW 136
DL E +A +G++LA++L ++E D+ ++V ++ ++S +G+L+DDIR + +
Sbjct: 563 DLLEAYAFLEGLELAKRLRCENIILEGDAKKVVDWVNSSAPNLSILGMLIDDIRYAMASF 622
Query: 137 NNSKVLFTPRQGNKVAHVLASLAFSYVD-RVWLEEWPSEISDVLRSD 183
+ +V +TPR N VAH +A+ A + ++WLE+ PS ISDVL SD
Sbjct: 623 STVRVQWTPRNSNLVAHRIANFACEINESQIWLEDLPSFISDVLISD 666
BLAST of Lcy12g008150 vs. NCBI nr
Match:
KAF7802400.1 (uncharacterized protein G2W53_041511 [Senna tora])
HSP 1 Score: 110.2 bits (274), Expect = 2.0e-20
Identity = 58/165 (35.15%), Postives = 95/165 (57.58%), Query Frame = 0
Query: 26 WRSPPIRELKLNIDASVRPDTGEAGGGCVLHGANGEVFTAACLSLQRCWSVDLAEGWAVY 85
W+ P R LKLN+DASVR D G+ GC++ G A + C+SV++AE AVY
Sbjct: 605 WQPPSWRFLKLNVDASVR-DGGQTRVGCIIRDYMGRCLAAMTKEITGCYSVEMAEALAVY 664
Query: 86 KGVQLARQLGFAEFVVETDSLRLVKILHGELHDVSEVGLLMDDIRGILRPWNNSKVLFTP 145
+G+ +A+++ +VE DS ++K+L+GE D + V ++ DI + + + +
Sbjct: 665 EGMVVAKRMSILNVLVEGDSASVIKLLNGEGMDCTYVSFIIKDILQLCSSFRSYSFNWVR 724
Query: 146 RQGNKVAHVLASLAFSYVD-----RVWLEEWPSEISDVLRSDAVS 186
R+ NKVAH+LA ++ VWLE++PS I + L+SD ++
Sbjct: 725 REANKVAHILAHDPVAFPSDNSGILVWLEDYPSLICNALKSDILT 768
BLAST of Lcy12g008150 vs. NCBI nr
Match:
KAF7845245.1 (transcription factor SCREAM2-like isoform X1 [Senna tora])
HSP 1 Score: 109.4 bits (272), Expect = 3.4e-20
Identity = 56/159 (35.22%), Postives = 95/159 (59.75%), Query Frame = 0
Query: 26 WRSPPIRELKLNIDASVRPDTGEAGGGCVLHGANGEVFTAACLSLQRCWSVDLAEGWAVY 85
W +P RE+K+N+DAS+ G+ G GCV+ G A ++ S +L E +A
Sbjct: 272 WEAPMWREMKVNVDASLLKQ-GKGGIGCVVRNFQGRCLAAFAKRMKNIESAELLEAFAFL 331
Query: 86 KGVQLARQLGFAEFVVETDSLRLVKILHGELHDVSEVGLLMDDIRGILRPWNNSKVLFTP 145
+G++LA+ L ++E D+ ++ ++HG ++S +G+L+DDIR ++ ++ KV + P
Sbjct: 332 EGLELAKNLRCDNIILEGDAKKVADLIHGSSQNLSHLGMLVDDIRKGMKNFSRVKVQWVP 391
Query: 146 RQGNKVAHVLASLAFSY-VDRVWLEEWPSEISDVLRSDA 184
R N VA +A+ A + +VWLE++P ISDVL SD+
Sbjct: 392 RNSNAVADRIANFACNLDQSQVWLEDFPQFISDVLISDS 429
BLAST of Lcy12g008150 vs. NCBI nr
Match:
ESR40694.1 (hypothetical protein CICLE_v10027161mg, partial [Citrus clementina])
HSP 1 Score: 108.6 bits (270), Expect = 5.9e-20
Identity = 56/159 (35.22%), Postives = 95/159 (59.75%), Query Frame = 0
Query: 26 WRSPPIRELKLNIDASVRPDTGEAGGGCVLHGANGEVFTAACLSLQRCWSVDLAEGWAVY 85
W+SPP K+N+DA+V AG G ++ + GEV A+ ++ ++ E AV+
Sbjct: 3 WQSPPPSWYKVNVDAAVSSTEDRAGIGVLVCNSTGEVMAASICTVIFSRDIEFVEAVAVH 62
Query: 86 KGVQLARQLGFAEFVVETDSLRLVKILHGELHDVSEVGLLMDDIRGILRPWNNS-KVLFT 145
G+QL +G A ++E+DS +V +++ ++H EVG L+ D++ +L +S +V F
Sbjct: 63 NGLQLVMDIGLAPAIIESDSFNVVNLINNKIHSRCEVGWLISDVQEVLSSSESSFQVKFA 122
Query: 146 PRQGNKVAHVLASLAF-SYVDRVWLEEWPSEISDVLRSD 183
PR N+VAH L+ LA + +++VWLEE P+EI+ + D
Sbjct: 123 PRSCNEVAHHLSKLALCNSMEKVWLEEVPTEIAAYVCKD 161
BLAST of Lcy12g008150 vs. TAIR 10
Match:
AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )
HSP 1 Score: 63.2 bits (152), Expect = 2.6e-10
Identity = 42/141 (29.79%), Postives = 71/141 (50.35%), Query Frame = 0
Query: 26 WRSPPIRELKLNIDASVRPDTGEAGGGCVLHGANGEVFTAACLSLQRCWSVDLAEGWAVY 85
W++PP + +K N DA+ + + G G +L +G V +L R +V AE A+
Sbjct: 137 WKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALR 196
Query: 86 KGVQLARQLGFAEFVVETDSLRLVKILHGELHDVSEVGLLMDDIRGILRPWNNSKVLFTP 145
V + + + E+D+ LV +L+ + + ++DI+ +L + K FTP
Sbjct: 197 WAVLTMSRFNYKRIIFESDAQALVNLLNSD-DFWPTLQPALEDIQQLLHHFEEVKFEFTP 256
Query: 146 RQGNKVAHVLA--SLAFSYVD 165
R GNKVA +A S++FS D
Sbjct: 257 RGGNKVADRIARESISFSNYD 276
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DBJ7 | 3.2e-24 | 41.72 | uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018... | [more] |
V4UMR3 | 2.8e-20 | 35.22 | RNase H domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CI... | [more] |
A0A1R3HHY9 | 9.1e-19 | 34.81 | Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_19197 PE=3 SV... | [more] |
A0A6P5S7Q3 | 1.6e-18 | 36.31 | uncharacterized protein LOC110753261 OS=Prunus avium OX=42229 GN=LOC110753261 PE... | [more] |
A0A5C7ITL2 | 2.7e-18 | 33.33 | RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_001058 ... | [more] |
Match Name | E-value | Identity | Description | |
XP_022150944.1 | 6.7e-24 | 41.72 | uncharacterized protein LOC111018973 [Momordica charantia] | [more] |
KAF7825130.1 | 4.1e-21 | 35.93 | putative RNA-directed DNA polymerase [Senna tora] | [more] |
KAF7802400.1 | 2.0e-20 | 35.15 | uncharacterized protein G2W53_041511 [Senna tora] | [more] |
KAF7845245.1 | 3.4e-20 | 35.22 | transcription factor SCREAM2-like isoform X1 [Senna tora] | [more] |
ESR40694.1 | 5.9e-20 | 35.22 | hypothetical protein CICLE_v10027161mg, partial [Citrus clementina] | [more] |
Match Name | E-value | Identity | Description | |
AT2G34320.1 | 2.6e-10 | 29.79 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | [more] |