Lcy12g006320 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g006320
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ATP synthase delta chain, chloroplastic-like
Location	Chr12: 27569726 .. 27570043 (+)
RNA-Seq Expression	Lcy12g006320
Synteny	Lcy12g006320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACTTTAACATCCTCTGTTTCAGCCCTCAGAGTTCCATCAACTGTAACGTCATCTCGCGAGTTTCTTCACATCAAGAATCACACTGCTCATCTTCCTCACCGTTCCCATTCTCGCAGATCCAACTCAATATCAAAACCCCCAAATTTTCTCTCTACACAAAAAACCCTAAATCCGCTTCAATTTTCCCCTTCCTCCCCCCGACGCTCCTCTTCGCTGATCCTCCACCGCAGCCGCACTTGTCGAGCATCTCAATCTAGCGGCTCGATTCACTCGCTGGCGAAGGACGTCAGGCGATTCTCGAAGTTGCTTTGA

mRNA sequence

ATGGATACTTTAACATCCTCTGTTTCAGCCCTCAGAGTTCCATCAACTGTAACGTCATCTCGCGAGTTTCTTCACATCAAGAATCACACTGCTCATCTTCCTCACCGTTCCCATTCTCGCAGATCCAACTCAATATCAAAACCCCCAAATTTTCTCTCTACACAAAAAACCCTAAATCCGCTTCAATTTTCCCCTTCCTCCCCCCGACGCTCCTCTTCGCTGATCCTCCACCGCAGCCGCACTTGTCGAGCATCTCAATCTAGCGGCTCGATTCACTCGCTGGCGAAGGACGTCAGGCGATTCTCGAAGTTGCTTTGA

Coding sequence (CDS)

ATGGATACTTTAACATCCTCTGTTTCAGCCCTCAGAGTTCCATCAACTGTAACGTCATCTCGCGAGTTTCTTCACATCAAGAATCACACTGCTCATCTTCCTCACCGTTCCCATTCTCGCAGATCCAACTCAATATCAAAACCCCCAAATTTTCTCTCTACACAAAAAACCCTAAATCCGCTTCAATTTTCCCCTTCCTCCCCCCGACGCTCCTCTTCGCTGATCCTCCACCGCAGCCGCACTTGTCGAGCATCTCAATCTAGCGGCTCGATTCACTCGCTGGCGAAGGACGTCAGGCGATTCTCGAAGTTGCTTTGA

Protein sequence

MDTLTSSVSALRVPSTVTSSREFLHIKNHTAHLPHRSHSRRSNSISKPPNFLSTQKTLNPLQFSPSSPRRSSSLILHRSRTCRASQSSGSIHSLAKDVRRFSKLL

Homology

[Close]

BLAST of Lcy12g006320 vs. ExPASy TrEMBL
Match: A0A6J1IF16 (ATP synthase delta chain, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111473623 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 8.4e-30
Identity = 82/116 (70.69%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 1   MDTLTSSVSALRVPSTVTSSREFLHIKNHTAHLPHRSHSRRSNSISKPPNFLSTQKTLNP 60
           MDTLTSSVS LRVPST+ SSR+ LH+KNH+AHLPHRS SRRSNSISKPPNFLST KTLNP
Sbjct: 1   MDTLTSSVSTLRVPSTLASSRDLLHLKNHSAHLPHRSPSRRSNSISKPPNFLSTHKTLNP 60

Query: 61  L----QFSPSSPRRSSSLILHR-------SRTCRASQSSGSIHSLAKDVRRFSKLL 106
           L     FS SSPRRSSS +LHR       +    ASQ++GSIHS+AKDV RFSK+L
Sbjct: 61  LPFSSSFSSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVL 116

[Close]

BLAST of Lcy12g006320 vs. ExPASy TrEMBL
Match: A0A6J1IKE3 (ATP synthase delta chain, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111474715 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.1e-29
Identity = 81/112 (72.32%), Postives = 91/112 (81.25%), Query Frame = 0


Query: 1   MDTLTSSVSALRVPSTVTSSREFLHIKNHTAHLPHRSHSRRSNSISKPPNFLSTQKTLNP 60
           MDTLTSSVS LRVPST+ SSR+ LH+KNH+AHLPHRS SRRSNSISKPPNFLST KTLNP
Sbjct: 1   MDTLTSSVSTLRVPSTLASSRDLLHLKNHSAHLPHRSPSRRSNSISKPPNFLSTHKTLNP 60

Query: 61  LQFSPSSPRRSSSLILHR-------SRTCRASQSSGSIHSLAKDVRRFSKLL 106
             FS SSPRRSSS +LHR       +    ASQ++GSIHS+AKDV RFSK+L
Sbjct: 61  FPFS-SSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVL 111

[Close]

BLAST of Lcy12g006320 vs. ExPASy TrEMBL
Match: A0A6J1F2X7 (ATP synthase delta chain, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441689 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.2e-29
Identity = 81/116 (69.83%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 1   MDTLTSSVSALRVPSTVTSSREFLHIKNHTAHLPHRSHSRRSNSISKPPNFLSTQKTLNP 60
           MDTLTSSVS LRVPST+ SSR+ LH+KN++AHLPHRS SRRSNSISKPPNFLST KTLNP
Sbjct: 1   MDTLTSSVSTLRVPSTLASSRDLLHLKNYSAHLPHRSPSRRSNSISKPPNFLSTHKTLNP 60

Query: 61  L----QFSPSSPRRSSSLILHR-------SRTCRASQSSGSIHSLAKDVRRFSKLL 106
           L     FS SSPRRSSS +LHR       +    ASQ++GSIHS+AKDV RFSK+L
Sbjct: 61  LPFSSSFSSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVL 116

[Close]

BLAST of Lcy12g006320 vs. ExPASy TrEMBL
Match: A0A0A0L326 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119340 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.5e-23
Identity = 78/115 (67.83%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 1   MDTLT--SSVSALRVPS-TVTSSREFLHIKNHTAHLPHRSHSRRSNSISKPPNFLSTQKT 60
           MDTLT  S  SALRVPS T+TSSR+FLH+KN TAHLPHRS SR SNSISKPPNFLST +T
Sbjct: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT 60

Query: 61  LNPLQFSPSSPRRSSSLILHR-------SRTCRASQSSGSIHSLAKDVRRFSKLL 106
           LNP     S+PRRSSS +LHR       +    ASQS+G+IHS+AKDV RFSKLL
Sbjct: 61  LNP-SIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLL 114

[Close]

BLAST of Lcy12g006320 vs. ExPASy TrEMBL
Match: A0A5D3DC09 (ATP synthase delta chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00810 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.2e-22
Identity = 76/115 (66.09%), Postives = 85/115 (73.91%), Query Frame = 0


Query: 1   MDTL--TSSVSALRVPS-TVTSSREFLHIKNHTAHLPHRSHSRRSNSISKPPNFLSTQKT 60
           MDTL  TS  S LRVPS T+ SSR+FLH+KN TAHLPHRS  R SNSISKPPNFLST KT
Sbjct: 1   MDTLTTTSVSSTLRVPSRTLASSRDFLHLKNPTAHLPHRSPPRTSNSISKPPNFLSTPKT 60

Query: 61  LNPLQFSPSSPRRSSSLILHR-------SRTCRASQSSGSIHSLAKDVRRFSKLL 106
           LNP     S+PRRSSS +LHR       +    ASQS+G+IHS+AKDV RFSKLL
Sbjct: 61  LNP-SIPFSTPRRSSSPLLHRRPASGYAAALVDASQSTGTIHSVAKDVGRFSKLL 114

[Close]

BLAST of Lcy12g006320 vs. NCBI nr
Match: XP_022974855.1 (ATP synthase delta chain, chloroplastic-like [Cucurbita maxima] >XP_022974856.1 ATP synthase delta chain, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 139.4 bits (350), Expect = 1.7e-29
Identity = 82/116 (70.69%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 1   MDTLTSSVSALRVPSTVTSSREFLHIKNHTAHLPHRSHSRRSNSISKPPNFLSTQKTLNP 60
           MDTLTSSVS LRVPST+ SSR+ LH+KNH+AHLPHRS SRRSNSISKPPNFLST KTLNP
Sbjct: 1   MDTLTSSVSTLRVPSTLASSRDLLHLKNHSAHLPHRSPSRRSNSISKPPNFLSTHKTLNP 60

Query: 61  L----QFSPSSPRRSSSLILHR-------SRTCRASQSSGSIHSLAKDVRRFSKLL 106
           L     FS SSPRRSSS +LHR       +    ASQ++GSIHS+AKDV RFSK+L
Sbjct: 61  LPFSSSFSSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVL 116

[Close]

BLAST of Lcy12g006320 vs. NCBI nr
Match: XP_022975394.1 (ATP synthase delta chain, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 139.0 bits (349), Expect = 2.3e-29
Identity = 81/112 (72.32%), Postives = 91/112 (81.25%), Query Frame = 0


Query: 1   MDTLTSSVSALRVPSTVTSSREFLHIKNHTAHLPHRSHSRRSNSISKPPNFLSTQKTLNP 60
           MDTLTSSVS LRVPST+ SSR+ LH+KNH+AHLPHRS SRRSNSISKPPNFLST KTLNP
Sbjct: 1   MDTLTSSVSTLRVPSTLASSRDLLHLKNHSAHLPHRSPSRRSNSISKPPNFLSTHKTLNP 60

Query: 61  LQFSPSSPRRSSSLILHR-------SRTCRASQSSGSIHSLAKDVRRFSKLL 106
             FS SSPRRSSS +LHR       +    ASQ++GSIHS+AKDV RFSK+L
Sbjct: 61  FPFS-SSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVL 111

[Close]

BLAST of Lcy12g006320 vs. NCBI nr
Match: XP_023540771.1 (ATP synthase delta chain, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 138.7 bits (348), Expect = 3.0e-29
Identity = 81/116 (69.83%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 1   MDTLTSSVSALRVPSTVTSSREFLHIKNHTAHLPHRSHSRRSNSISKPPNFLSTQKTLNP 60
           MDTLTSSVS LRVPST+ SSR+ +H+KNH+AHLPHRS SRRSNSISKPPNFLST KTLNP
Sbjct: 1   MDTLTSSVSTLRVPSTLASSRDLIHLKNHSAHLPHRSPSRRSNSISKPPNFLSTHKTLNP 60

Query: 61  L----QFSPSSPRRSSSLILHR-------SRTCRASQSSGSIHSLAKDVRRFSKLL 106
           L     FS SSPRRSSS +LHR       +    ASQ++GSIHS+AKDV RFSK+L
Sbjct: 61  LPFSSSFSSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVL 116

[Close]

BLAST of Lcy12g006320 vs. NCBI nr
Match: KAG6597062.1 (Serine/arginine-rich splicing factor RS31, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.1 bits (344), Expect = 8.6e-29
Identity = 81/116 (69.83%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 1   MDTLTSSVSALRVPSTVTSSREFLHIKNHTAHLPHRSHSRRSNSISKPPNFLSTQKTLNP 60
           MDTLTSSVS LRVPST+ SSR+ LH+KN++AHLPHRS SRRSNSISKPPNFLST KTLNP
Sbjct: 1   MDTLTSSVSTLRVPSTLASSRDLLHLKNYSAHLPHRSPSRRSNSISKPPNFLSTHKTLNP 60

Query: 61  L----QFSPSSPRRSSSLILHR-------SRTCRASQSSGSIHSLAKDVRRFSKLL 106
           L     FS SSPRRSSS +LHR       +    ASQ++GSIHS+AKDV RFSK+L
Sbjct: 61  LPFSSSFSSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVL 116

[Close]

BLAST of Lcy12g006320 vs. NCBI nr
Match: XP_022934549.1 (ATP synthase delta chain, chloroplastic-like [Cucurbita moschata] >XP_022934555.1 ATP synthase delta chain, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 137.1 bits (344), Expect = 8.6e-29
Identity = 81/116 (69.83%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 1   MDTLTSSVSALRVPSTVTSSREFLHIKNHTAHLPHRSHSRRSNSISKPPNFLSTQKTLNP 60
           MDTLTSSVS LRVPST+ SSR+ LH+KN++AHLPHRS SRRSNSISKPPNFLST KTLNP
Sbjct: 1   MDTLTSSVSTLRVPSTLASSRDLLHLKNYSAHLPHRSPSRRSNSISKPPNFLSTHKTLNP 60

Query: 61  L----QFSPSSPRRSSSLILHR-------SRTCRASQSSGSIHSLAKDVRRFSKLL 106
           L     FS SSPRRSSS +LHR       +    ASQ++GSIHS+AKDV RFSK+L
Sbjct: 61  LPFSSSFSSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVL 116

The following BLAST results are available for this feature:

BLAST of Lcy12g006320 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g006320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IF16	8.4e-30	70.69	ATP synthase delta chain, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1IKE3	1.1e-29	72.32	ATP synthase delta chain, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1F2X7	4.2e-29	69.83	ATP synthase delta chain, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A0A0L326	1.5e-23	67.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119340 PE=3 SV=1	[more]
A0A5D3DC09	2.2e-22	66.09	ATP synthase delta chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Lcy12g006320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974855.1	1.7e-29	70.69	ATP synthase delta chain, chloroplastic-like [Cucurbita maxima] >XP_022974856.1 ...	[more]
XP_022975394.1	2.3e-29	72.32	ATP synthase delta chain, chloroplastic-like [Cucurbita maxima]	[more]
XP_023540771.1	3.0e-29	69.83	ATP synthase delta chain, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
KAG6597062.1	8.6e-29	69.83	Serine/arginine-rich splicing factor RS31, partial [Cucurbita argyrosperma subsp...	[more]
XP_022934549.1	8.6e-29	69.83	ATP synthase delta chain, chloroplastic-like [Cucurbita moschata] >XP_022934555....	[more]

BLAST of Lcy12g006320 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g006320.1	Lcy12g006320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism