Lcy12g005670 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g005670
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr12: 23144982 .. 23148582 (+)
RNA-Seq ExpressionLcy12g005670
SyntenyLcy12g005670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGACAGAAACAGAGAGATTCTAGGCTTTTTCAGAAAAAAAAAAAAAAAAAAATTGGAGGATTCAACTGAAATTGAAAAGAGCACAATGCGGATTGCGAAAAGTGCTTTCAATTTACCCTTCTGCGAGTCTCTCCTACAATCTCTCGCGGCCATTTTGAGGTTTCTGAAGTTTAAGCTTTACACACAGAATCCACACGATTCTTCCTCTGCTACCACCGCCATGCCCGCCGACGGCAAAGTTTCCTACGCCGGCGGCTCAGCTCCGCCTCCCACGGCAGCGAACCCTCAAACTTCAAGGGCTGTCAGATCTGTAAGCCTCTCTCTCTTTCTCTCCTCTTCTGTGATGTAGCGCTATATAAACAGTTTAGATCAAATTCCATATTTGATTTAATTACCATACGAAAAAAATCATAAAAAATAAATAATAAAAAAAATAAACAAGCACTTCAAACTTCATGGGTAACAGACTTTTAGGTTAAAATCAAATTTCAGCCCTGTACTCTTTAAGATTATTCTGATGGGGTTTTTTAAAGTATATTTCATTGAACAAAACTTGGATACATGTCGGTAGGTAGAGTTTTCCTACATACCCCGTTAAAATCTTGACAACTAAAAAAGAGGAAGGGAGAAAATGGAAAAAAAAAATTATCTGTTTCCTAATTGTCAACATTTTAATTGTGGCATGCAGGAAGATTCCTACATACCAGTGTGAGCCAAGTTTTTTCCTATTTAGGATATTTTTTAAAATGTCTATTTTAATTTTTCAAAATCTTTTGATTCTTTTTTTTTTTGAAAATCAAAATCTTTTGATTCTTATTTCGAGTACTTGATTTAACAAATTAATATGAGCTTATATTTGCGGATCTACCACAAGTCAGGACCTTCGAACCCTGAACTTTTTATATATATATATTATATTAGTATTAAATAATGTTCATGTCATTACTAATATTGTCCTAGTGGCAATCATGATTCTAGCACCTACATGCCTAGAAATCAGTTTTATAAAACGTTGTTGAAGTTACGTATATATGTACTTCTATTATTTAAAGCTCCATGGTAATGGCTGTTTTTTCTTTCTCTATATATATATTTTTATTTATACGTGTATTTTATTACATGTATGTAGGATCGTATGACAATACTAGCATAATGAATAGGGTTGCTTAATAAAGTTTAAACTTTTTCAATCATTAAACAAAAATTAAAAGAAATTAATTTAAATGAAACAACATTCTAAATTATACTTATATTTGACCATTTTCCAAAGCATACAATCTACTAAAATAAATAATCAAACTGTAAAATTTAAAATAGTAGAGAGAAAAATATAATATCGAAATTTTTTATAGTGGTTTAGAAATCCTACTTCACTCCCCAAGATTCCTTCTCTGATATCTCACTGCAATGACTCTCTTACACGAAAACCAAATAGGTCGAATACTCTTTTTTTAGGTTCAAAAGTAAAACCTCTACAAATCTTTTTATAGGTTCAGAACTCAATCTATATCGATCTTTTTAAACGGGTTCAAGATCAAACCTCTACGATCCTTTTTAAACGAGTTCAAGATCAAACCACTACAAATACTTTTTTTTAGGGGGTTTAAAATTAAACCACTACAATCTCAGGATTAAATTACTACAATCCATTGGTCGGGTTCAGGATTAAACCACTCACATTTAGTACCCAATGTGCACCCACACCTTATTATCAATTGTAAATGAAGTGATGAAATAAATTAAAACCCTCCACAAAGTAGGCCAACTCTCAAAAGAGTAAATACACAATTTTTTAAGCACTCAAAATAGTCTAATCTTCGCTAAAGGATAATAATAAGAATAAAGCTTTACATGTTCCTCTAAACCTTCCTCTATATAATTTTAGAAATATATTTATATCTGTCTTTTTTTAAATGGAAATTGTTATTATTATTTTACAAAGTTCAATACAAACTAACTTCAAACTAACGATAAGGACTAATTAAAGAGTTTATTTTTTAAAGTACAGGAACTGAAATGGAATGAGATCAAAAGTACATGGAAAAAAATAGTATATCAATAAAAACCAGTCAAATTTTCAATTAAACAAACTTATATCAAAATATATCAAGCCCCCTGACATATTATAATGACAGAAAAAAGGAGGAGACAAGATGAATTGATTTATTACCAAATGATTGTCTTGTCTATGCAAAGGACAATACACAGAATATATAACAAAGAAAACAACAGCTGGAGCACTATGATAGGCTAATAAAATAACAAACTATACAACCATAAAACAGAGAAATCACCCAAATAAACTTAAGGATAATTAAAATTCTATCACATATAATTCTAGATCCACCACTATTATATTCACATAACAAATGTTGGGAGTGGATATTGGATAAGTGAATACTAATAACAGAGTAATATAGTATAACCGAACCAAATAATTACATCGAGATTAAAATAGATATTTTAAATTTTGAAGGATGAAAATAAAACATGAAAGCTCCAACCTATAATATGATGAAATGTTAGTGCATGTTTGGGAGTGATTTTGAAATGGTTAAAATCACTTTTATCTTATTCGAAATCATCTCGAAACATACCTTTAATTATTCAAAATCAATTTCATGTTTAATTTTACACTTTTAAAGGTCATTTTCATATCATCAAAATTGATTTTGAATTATTAAAAGCATATTTCGGAGTGATTTTAAATTTGACAGAAGTGATTTTAATCATTTCAAAATCACTCCCAAACATGCACTTAATGTGGGGTTGAATCTCTCTTTCTGTAGGGGCGAGCAAGTAGGTCCAGCAGACGTGTTCCTCCACCAAGGAGGAGCCGGGGTGGTGGTGGTCAAATCAATAAAGATAGAAATGACTCCATTTTTATCTAAAATCTGTCTGTAGGCAACAATGTATGAATGTATGTATGAAAGTGAAGTTTTTCTTAGAGTCGTTCAACAAATATGAAGCAAAGATGTGAACTATTTGCTCGAATCGAAGGAAAAGAAGTGGTAATTTAATCCTAAACTATGCTAATTAAGGTTACATAATATTATAAAACTAAAGTATGACTACATTCTACAAGCACTTATCACATCGATTTTTGGTCAAAGTAAGTATACCTTAGCGGTAATTGGAATAGACCTTCGGTAAATAGGTCAGAGCTTCAAATCTCTCAGAAGGTTATCATAATATGATTAGTAGTTTTATACCATTAAATGTAAGAGATATCATTTCAAATAAAAAAAATGTAAGAGATAGAAACTACAAAAGTATTTCAAATTTTCATTCAAAGAGTTATTAAGTGACATGCAAATTTTTCGAATTCTTGGACAAAAATTAGGAGACAATCATGCATTGTGGTGGCCTCATTCAATAAATTTTTCTTCTTTTGATTGAGTTGACATAAAAGATTCATTTTAGTGATTTTTATGATATATATTTTATTATTCTTTAGTTAAAAAAATGAACACAATTACCTATTTTCAAAGATTATTTTGATAATTTCTCAGCTGGAAGTTCTTAGCCCGACAACTACTTTCGTACTTAAAAAAAAAATTAATTTAATAATTTATAGTGTCAAAATAATCCTTCAGTAA

mRNA sequence

GAAGACAGAAACAGAGAGATTCTAGGCTTTTTCAGAAAAAAAAAAAAAAAAAAATTGGAGGATTCAACTGAAATTGAAAAGAGCACAATGCGGATTGCGAAAAGTGCTTTCAATTTACCCTTCTGCGAGTCTCTCCTACAATCTCTCGCGGCCATTTTGAGGTTTCTGAAGTTTAAGCTTTACACACAGAATCCACACGATTCTTCCTCTGCTACCACCGCCATGCCCGCCGACGGCAAAGTTTCCTACGCCGGCGGCTCAGCTCCGCCTCCCACGGCAGCGAACCCTCAAACTTCAAGGGCTGTCAGATCTGGGCGAGCAAGTAGGTCCAGCAGACGTGTTCCTCCACCAAGGAGGAGCCGGGGTGGTGGTGGTCAAATCAATAAAGATAGAAATGACTCCATTTTTATCTAAAATCTGTCTGTAGGCAACAATGTATGAATGTATGTATGAAAGTGAAGTTTTTCTTAGAGTCGTTCAACAAATATGAAGCAAAGATGTGAACTATTTGCTCGAATCGAAGGAAAAGAAGTGGTAATTTAATCCTAAACTATGCTAATTAAGGTTACATAATATTATAAAACTAAAGTATGACTACATTCTACAAGCACTTATCACATCGATTTTTGGTCAAAGTAAGTATACCTTAGCGGTAATTGGAATAGACCTTCGGTAAATAGGTCAGAGCTTCAAATCTCTCAGAAGGTTATCATAATATGATTAGTAGTTTTATACCATTAAATGTAAGAGATATCATTTCAAATAAAAAAAATGTAAGAGATAGAAACTACAAAAGTATTTCAAATTTTCATTCAAAGAGTTATTAAGTGACATGCAAATTTTTCGAATTCTTGGACAAAAATTAGGAGACAATCATGCATTGTGGTGGCCTCATTCAATAAATTTTTCTTCTTTTGATTGAGTTGACATAAAAGATTCATTTTAGTGATTTTTATGATATATATTTTATTATTCTTTAGTTAAAAAAATGAACACAATTACCTATTTTCAAAGATTATTTTGATAATTTCTCAGCTGGAAGTTCTTAGCCCGACAACTACTTTCGTACTTAAAAAAAAAATTAATTTAATAATTTATAGTGTCAAAATAATCCTTCAGTAA

Coding sequence (CDS)

ATGCGGATTGCGAAAAGTGCTTTCAATTTACCCTTCTGCGAGTCTCTCCTACAATCTCTCGCGGCCATTTTGAGGTTTCTGAAGTTTAAGCTTTACACACAGAATCCACACGATTCTTCCTCTGCTACCACCGCCATGCCCGCCGACGGCAAAGTTTCCTACGCCGGCGGCTCAGCTCCGCCTCCCACGGCAGCGAACCCTCAAACTTCAAGGGCTGTCAGATCTGGGCGAGCAAGTAGGTCCAGCAGACGTGTTCCTCCACCAAGGAGGAGCCGGGGTGGTGGTGGTCAAATCAATAAAGATAGAAATGACTCCATTTTTATCTAA

Protein sequence

MRIAKSAFNLPFCESLLQSLAAILRFLKFKLYTQNPHDSSSATTAMPADGKVSYAGGSAPPPTAANPQTSRAVRSGRASRSSRRVPPPRRSRGGGGQINKDRNDSIFI
Homology
[Close]
BLAST of Lcy12g005670 vs. ExPASy TrEMBL
Match: A0A6J1DV83 (uncharacterized protein LOC111024756 OS=Momordica charantia OX=3673 GN=LOC111024756 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.9e-09
Identity = 47/94 (50.00%), Postives = 58/94 (61.70%), Query Frame = 0 

Query: 13  CESLLQSLAAILRFLKFKLYTQNPHDSSSATTA------MPADGKVSYAGGSAPPPTAAN 72
           C SLLQ   A++RFL F+L+TQ+PH SSS+ TA      + +  ++ Y GGS  PPT A+
Sbjct: 46  CNSLLQ---ALIRFLGFQLHTQHPHHSSSSPTANGAYHLISSSPELCYPGGSDLPPTMAD 105

Query: 73  -PQTSRAVRSGRASRSSRRVPPPRRSRGGGGQIN 100
            P        GR S  SRR PPPRRS GGGGQ N
Sbjct: 106 PPPDGSGFMQGRESEFSRRAPPPRRSTGGGGQTN 136

[Close]
BLAST of Lcy12g005670 vs. ExPASy TrEMBL
Match: A0A0A0KAN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020180 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04
Identity = 41/93 (44.09%), Postives = 51/93 (54.84%), Query Frame = 0 

Query: 14  ESLLQSLAAILRFLKFKLYTQNPHDSSSATTAMPADGKVSYAGGSAPPPTAANPQTSRAV 73
           +SLLQ   +I RFL+F+L+ Q PHDSSSA+T  P D K+  A         A PQTSR +
Sbjct: 27  KSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP-DPKILMAAN-----IQATPQTSRGI 86

Query: 74  RSGRASRSSRRVPPPRRSRGGGGQINKDRNDSI 107
              +  R       P RS GGGGQ N  + D I
Sbjct: 87  TLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRI 113

[Close]
BLAST of Lcy12g005670 vs. NCBI nr
Match: XP_022158220.1 (uncharacterized protein LOC111024756 [Momordica charantia])

HSP 1 Score: 70.5 bits (171), Expect = 1.0e-08
Identity = 47/94 (50.00%), Postives = 58/94 (61.70%), Query Frame = 0 

Query: 13  CESLLQSLAAILRFLKFKLYTQNPHDSSSATTA------MPADGKVSYAGGSAPPPTAAN 72
           C SLLQ   A++RFL F+L+TQ+PH SSS+ TA      + +  ++ Y GGS  PPT A+
Sbjct: 46  CNSLLQ---ALIRFLGFQLHTQHPHHSSSSPTANGAYHLISSSPELCYPGGSDLPPTMAD 105

Query: 73  -PQTSRAVRSGRASRSSRRVPPPRRSRGGGGQIN 100
            P        GR S  SRR PPPRRS GGGGQ N
Sbjct: 106 PPPDGSGFMQGRESEFSRRAPPPRRSTGGGGQTN 136

[Close]
BLAST of Lcy12g005670 vs. NCBI nr
Match: XP_004138359.2 (uncharacterized protein LOC101208209 [Cucumis sativus] >KGN45904.1 hypothetical protein Csa_005171 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 5.8e-04
Identity = 41/93 (44.09%), Postives = 51/93 (54.84%), Query Frame = 0 

Query: 14  ESLLQSLAAILRFLKFKLYTQNPHDSSSATTAMPADGKVSYAGGSAPPPTAANPQTSRAV 73
           +SLLQ   +I RFL+F+L+ Q PHDSSSA+T  P D K+  A         A PQTSR +
Sbjct: 27  KSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAP-DPKILMAAN-----IQATPQTSRGI 86

Query: 74  RSGRASRSSRRVPPPRRSRGGGGQINKDRNDSI 107
              +  R       P RS GGGGQ N  + D I
Sbjct: 87  TLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRI 113

The following BLAST results are available for this feature:
BLAST of Lcy12g005670 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy12g005670 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DV834.9e-0950.00uncharacterized protein LOC111024756 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A0A0KAN82.8e-0444.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020180 PE=4 SV=1[more]
BLAST of Lcy12g005670 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158220.11.0e-0850.00uncharacterized protein LOC111024756 [Momordica charantia][more]
XP_004138359.25.8e-0444.09uncharacterized protein LOC101208209 [Cucumis sativus] >KGN45904.1 hypothetical ... [more]
BLAST of Lcy12g005670 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g005670.1Lcy12g005670.1mRNA