Lcy12g005210 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g005210
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionGFO_IDH_MocA domain-containing protein
LocationChr12: 20098879 .. 20099115 (-)
RNA-Seq ExpressionLcy12g005210
SyntenyLcy12g005210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAAACTCGCACCCAAGTCCGTCATCTCCCCCATCGCCAATGGATCTCTCGACAAGGCCATGAACTTTGCCGCCAGAGCTATCAAGGTGTACGAAAGCTATAATCAGATTCTCGATGACCCTTGTGTGGATGCCGTCTATGCCATTGCCGTGCCTTCAATGGCAGTGGGCGATTTTGGCTGCGGAGAAGAAGAAGCACATTCTCTTGGAGAAACCCACGACGCTGAACGTTGA

mRNA sequence

ATGGTCAAACTCGCACCCAAGTCCGTCATCTCCCCCATCGCCAATGGATCTCTCGACAAGGCCATGAACTTTGCCGCCAGAGCTATCAAGGTGTACGAAAGCTATAATCAGATTCTCGATGACCCTTGTGTGGATGCCGTCTATGCCATTGCCGTGCCTTCAATGGCAGTGGGCGATTTTGGCTGCGGAGAAGAAGAAGCACATTCTCTTGGAGAAACCCACGACGCTGAACGTTGA

Coding sequence (CDS)

ATGGTCAAACTCGCACCCAAGTCCGTCATCTCCCCCATCGCCAATGGATCTCTCGACAAGGCCATGAACTTTGCCGCCAGAGCTATCAAGGTGTACGAAAGCTATAATCAGATTCTCGATGACCCTTGTGTGGATGCCGTCTATGCCATTGCCGTGCCTTCAATGGCAGTGGGCGATTTTGGCTGCGGAGAAGAAGAAGCACATTCTCTTGGAGAAACCCACGACGCTGAACGTTGA

Protein sequence

MVKLAPKSVISPIANGSLDKAMNFAARAIKVYESYNQILDDPCVDAVYAIAVPSMAVGDFGCGEEEAHSLGETHDAER
Homology
BLAST of Lcy12g005210 vs. ExPASy TrEMBL
Match: A0A5D3CUF0 (Putative oxidoreductase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00170 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-07
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 0

Query: 2  VKLAPKSVISPIANGSLDKAMNFAA-----RAIKVYESYNQILDDPCVDAVY 49
          +  AP S ++ +A+ SLDKA+NFAA       +KVY SYNQILDDPCVDAVY
Sbjct: 24 INSAPNSAVTAVASRSLDKALNFAAVNGLPETVKVYGSYNQILDDPCVDAVY 75

BLAST of Lcy12g005210 vs. ExPASy TrEMBL
Match: A0A1S3C2A0 (uncharacterized oxidoreductase At4g09670-like OS=Cucumis melo OX=3656 GN=LOC103496207 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-07
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 0

Query: 2  VKLAPKSVISPIANGSLDKAMNFAA-----RAIKVYESYNQILDDPCVDAVY 49
          +  AP S ++ +A+ SLDKA+NFAA       +KVY SYNQILDDPCVDAVY
Sbjct: 24 INSAPNSAVTAVASRSLDKALNFAAVNGLPETVKVYGSYNQILDDPCVDAVY 75

BLAST of Lcy12g005210 vs. ExPASy TrEMBL
Match: A0A6J1CPV4 (uncharacterized oxidoreductase At4g09670-like OS=Momordica charantia OX=3673 GN=LOC111013201 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.4e-07
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 2  VKLAPKSVISPIANGSLDKAMNFAA-----RAIKVYESYNQILDDPCVDAVY 49
          +  AP S +S +A+ SLDKA+NFAA      ++KVY SY+QILDDPCVDAVY
Sbjct: 24 INSAPNSAVSAVASRSLDKALNFAAVNGLPDSVKVYGSYDQILDDPCVDAVY 75

BLAST of Lcy12g005210 vs. ExPASy TrEMBL
Match: A0A0A0LA36 (GFO_IDH_MocA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G194390 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 0

Query: 2  VKLAPKSVISPIANGSLDKAMNFAA-----RAIKVYESYNQILDDPCVDAVY 49
          +  AP S ++ +A+ SLDKA NFAA       +K+Y SYNQILDDPCVDAVY
Sbjct: 24 INSAPNSAVTAVASRSLDKAFNFAAVNGLPETVKLYGSYNQILDDPCVDAVY 75

BLAST of Lcy12g005210 vs. ExPASy TrEMBL
Match: A0A6J1J8B2 (uncharacterized oxidoreductase At4g09670-like OS=Cucurbita maxima OX=3661 GN=LOC111482200 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 0

Query: 2  VKLAPKSVISPIANGSLDKAMNFAA-----RAIKVYESYNQILDDPCVDAVY 49
          +  AP S +S +A+ SLDKA+NFAA       +KVY  Y+QILDDPCVDAVY
Sbjct: 24 INSAPNSTVSAVASRSLDKALNFAAVNGLPETVKVYGGYDQILDDPCVDAVY 75

BLAST of Lcy12g005210 vs. NCBI nr
Match: XP_008456198.1 (PREDICTED: uncharacterized oxidoreductase At4g09670-like [Cucumis melo] >KAA0037231.1 putative oxidoreductase [Cucumis melo var. makuwa] >TYK13839.1 putative oxidoreductase [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 6.9e-07
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 0

Query: 2  VKLAPKSVISPIANGSLDKAMNFAA-----RAIKVYESYNQILDDPCVDAVY 49
          +  AP S ++ +A+ SLDKA+NFAA       +KVY SYNQILDDPCVDAVY
Sbjct: 24 INSAPNSAVTAVASRSLDKALNFAAVNGLPETVKVYGSYNQILDDPCVDAVY 75

BLAST of Lcy12g005210 vs. NCBI nr
Match: XP_038891138.1 (uncharacterized protein LOC120080522 isoform X1 [Benincasa hispida])

HSP 1 Score: 63.5 bits (153), Expect = 9.0e-07
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 0

Query: 2   VKLAPKSVISPIANGSLDKAMNFAA-----RAIKVYESYNQILDDPCVDAVY 49
           +  AP S +S IA+ SLDKA+NFAA       +KVY SY+QILDDPCVDAVY
Sbjct: 448 INSAPNSAVSAIASRSLDKALNFAAVNGLPETVKVYGSYHQILDDPCVDAVY 499

BLAST of Lcy12g005210 vs. NCBI nr
Match: XP_038891146.1 (uncharacterized oxidoreductase At4g09670-like isoform X2 [Benincasa hispida])

HSP 1 Score: 63.5 bits (153), Expect = 9.0e-07
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 0

Query: 2   VKLAPKSVISPIANGSLDKAMNFAA-----RAIKVYESYNQILDDPCVDAVY 49
           +  AP S +S IA+ SLDKA+NFAA       +KVY SY+QILDDPCVDAVY
Sbjct: 154 INSAPNSAVSAIASRSLDKALNFAAVNGLPETVKVYGSYHQILDDPCVDAVY 205

BLAST of Lcy12g005210 vs. NCBI nr
Match: XP_022143296.1 (uncharacterized oxidoreductase At4g09670-like [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-06
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 2  VKLAPKSVISPIANGSLDKAMNFAA-----RAIKVYESYNQILDDPCVDAVY 49
          +  AP S +S +A+ SLDKA+NFAA      ++KVY SY+QILDDPCVDAVY
Sbjct: 24 INSAPNSAVSAVASRSLDKALNFAAVNGLPDSVKVYGSYDQILDDPCVDAVY 75

BLAST of Lcy12g005210 vs. NCBI nr
Match: XP_004140728.1 (uncharacterized oxidoreductase At4g09670 [Cucumis sativus] >KGN57472.1 hypothetical protein Csa_011602 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-06
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 0

Query: 2  VKLAPKSVISPIANGSLDKAMNFAA-----RAIKVYESYNQILDDPCVDAVY 49
          +  AP S ++ +A+ SLDKA NFAA       +K+Y SYNQILDDPCVDAVY
Sbjct: 24 INSAPNSAVTAVASRSLDKAFNFAAVNGLPETVKLYGSYNQILDDPCVDAVY 75

BLAST of Lcy12g005210 vs. TAIR 10
Match: AT4G09670.1 (Oxidoreductase family protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.0e-04
Identity = 23/61 (37.70%), Postives = 36/61 (59.02%), Query Frame = 0

Query: 2  VKLAPKSVISPIANGSLDKAMNFAA-----RAIKVYESYNQILDDPCVDAVYAIAVPSMA 58
          + LAP + IS +A+ SL+KA  FA       + K++ SY  +L+DP +DA+Y     S+ 
Sbjct: 25 IHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLH 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CUF03.3e-0759.62Putative oxidoreductase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3C2A03.3e-0759.62uncharacterized oxidoreductase At4g09670-like OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A6J1CPV47.4e-0759.62uncharacterized oxidoreductase At4g09670-like OS=Momordica charantia OX=3673 GN=... [more]
A0A0A0LA361.3e-0657.69GFO_IDH_MocA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G19439... [more]
A0A6J1J8B21.7e-0657.69uncharacterized oxidoreductase At4g09670-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
Match NameE-valueIdentityDescription
XP_008456198.16.9e-0759.62PREDICTED: uncharacterized oxidoreductase At4g09670-like [Cucumis melo] >KAA0037... [more]
XP_038891138.19.0e-0761.54uncharacterized protein LOC120080522 isoform X1 [Benincasa hispida][more]
XP_038891146.19.0e-0761.54uncharacterized oxidoreductase At4g09670-like isoform X2 [Benincasa hispida][more]
XP_022143296.11.5e-0659.62uncharacterized oxidoreductase At4g09670-like [Momordica charantia][more]
XP_004140728.12.6e-0657.69uncharacterized oxidoreductase At4g09670 [Cucumis sativus] >KGN57472.1 hypotheti... [more]
Match NameE-valueIdentityDescription
AT4G09670.12.0e-0437.70Oxidoreductase family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g005210.1Lcy12g005210.1mRNA