Lcy12g004580 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g004580
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNA-directed DNA polymerase (reverse transcriptase)-related family protein
LocationChr12: 16884246 .. 16885172 (+)
RNA-Seq ExpressionLcy12g004580
SyntenyLcy12g004580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATGCAAGTTGTTGATAACTTAGGCAGGTATTTGGGTGTGTCGTCTTCTTTTTCTAGAAATAGGAAAGAAGATTTTAAAGGAGTCAAACAACGTGTCTGGCAAACGTTACAAGGTTGGAAGGGAAAATTTTTCTCTATGGGAGGTAAGGAGGTTCTTATCAAAAGTGTGGCGCAAGCTATACCCACATACATTATGAGCTGCTTCCGCCTCCCTAGTACACTCTGCGATGACCTGCATAAGATGATGGCGAGATTTTGGTGGGGCACCACCGAGATGAAAAAGAAAATTCATTGGAAAAGATGGGATCTCATGTGCACTCCAAAAGAGGTTGGGGGTTTAAATTCCGGTGATCTAAAAGGATTTAATAGGGCTTTGTTAGCAAAACAGGTATGGCGAATTTTCACATCTCCAAGTATATTGGTGTCCAAAGTTATCAAAGGGCCATATGCTTATAATATGTCAGTTTTGGATGCCCCTGTTAAATCAAACTGCTCAGTTTTCTGGAGAGGTTTTGTATGGGCCCATGGTTTATTTTTTAATGGTATGCGAAAACAAGTCGGAAATGGAACATCCATCAAATTCTTCCATGATCCGTGGATACCGAAGGATAATACTTTTAAACCACTAAGAATTGACCATTCAATCACCAATGATAATTTATTGGTAGCAGATCTCATCACACCTTCCAAGGAATGGAATGTCCAGAAGCTCAAGGAGTTAGTTTCGGAGGTAGATGCTAATATTATAAGTGCAATTCCTATTAGTTTGGGGAATGATGAGGACAGATGGATTTGGCACTACTCCAAAAATGGGAAGTACCCGGTTAAAATTGGTTATACGGTGGCCATCATGTCAAATGTGGATATAGCGTCATCTTCAGTTAACATTCTAAAGAATTGGTGGGGAACCCTTTGGGGCTAA

mRNA sequence

ATGGGAATGCAAGTTGTTGATAACTTAGGCAGGTATTTGGGTGTGTCGTCTTCTTTTTCTAGAAATAGGAAAGAAGATTTTAAAGGAGTCAAACAACGTGTCTGGCAAACGTTACAAGGTTGGAAGGGAAAATTTTTCTCTATGGGAGGTAAGGAGGTTCTTATCAAAAGTGTGGCGCAAGCTATACCCACATACATTATGAGCTGCTTCCGCCTCCCTAGTACACTCTGCGATGACCTGCATAAGATGATGGCGAGATTTTGGTGGGGCACCACCGAGATGAAAAAGAAAATTCATTGGAAAAGATGGGATCTCATGTGCACTCCAAAAGAGGTTGGGGGTTTAAATTCCGGTGATCTAAAAGGATTTAATAGGGCTTTGTTAGCAAAACAGGTATGGCGAATTTTCACATCTCCAAGTATATTGGTGTCCAAAGTTATCAAAGGGCCATATGCTTATAATATGTCAGTTTTGGATGCCCCTGTTAAATCAAACTGCTCAGTTTTCTGGAGAGGTTTTGTATGGGCCCATGGTTTATTTTTTAATGGTATGCGAAAACAAGTCGGAAATGGAACATCCATCAAATTCTTCCATGATCCGTGGATACCGAAGGATAATACTTTTAAACCACTAAGAATTGACCATTCAATCACCAATGATAATTTATTGGTAGCAGATCTCATCACACCTTCCAAGGAATGGAATGTCCAGAAGCTCAAGGAGTTAGTTTCGGAGGTAGATGCTAATATTATAAGTGCAATTCCTATTAGTTTGGGGAATGATGAGGACAGATGGATTTGGCACTACTCCAAAAATGGGAAGTACCCGGTTAAAATTGGTTATACGGTGGCCATCATGTCAAATGTGGATATAGCGTCATCTTCAGTTAACATTCTAAAGAATTGGTGGGGAACCCTTTGGGGCTAA

Coding sequence (CDS)

ATGGGAATGCAAGTTGTTGATAACTTAGGCAGGTATTTGGGTGTGTCGTCTTCTTTTTCTAGAAATAGGAAAGAAGATTTTAAAGGAGTCAAACAACGTGTCTGGCAAACGTTACAAGGTTGGAAGGGAAAATTTTTCTCTATGGGAGGTAAGGAGGTTCTTATCAAAAGTGTGGCGCAAGCTATACCCACATACATTATGAGCTGCTTCCGCCTCCCTAGTACACTCTGCGATGACCTGCATAAGATGATGGCGAGATTTTGGTGGGGCACCACCGAGATGAAAAAGAAAATTCATTGGAAAAGATGGGATCTCATGTGCACTCCAAAAGAGGTTGGGGGTTTAAATTCCGGTGATCTAAAAGGATTTAATAGGGCTTTGTTAGCAAAACAGGTATGGCGAATTTTCACATCTCCAAGTATATTGGTGTCCAAAGTTATCAAAGGGCCATATGCTTATAATATGTCAGTTTTGGATGCCCCTGTTAAATCAAACTGCTCAGTTTTCTGGAGAGGTTTTGTATGGGCCCATGGTTTATTTTTTAATGGTATGCGAAAACAAGTCGGAAATGGAACATCCATCAAATTCTTCCATGATCCGTGGATACCGAAGGATAATACTTTTAAACCACTAAGAATTGACCATTCAATCACCAATGATAATTTATTGGTAGCAGATCTCATCACACCTTCCAAGGAATGGAATGTCCAGAAGCTCAAGGAGTTAGTTTCGGAGGTAGATGCTAATATTATAAGTGCAATTCCTATTAGTTTGGGGAATGATGAGGACAGATGGATTTGGCACTACTCCAAAAATGGGAAGTACCCGGTTAAAATTGGTTATACGGTGGCCATCATGTCAAATGTGGATATAGCGTCATCTTCAGTTAACATTCTAAAGAATTGGTGGGGAACCCTTTGGGGCTAA

Protein sequence

MGMQVVDNLGRYLGVSSSFSRNRKEDFKGVKQRVWQTLQGWKGKFFSMGGKEVLIKSVAQAIPTYIMSCFRLPSTLCDDLHKMMARFWWGTTEMKKKIHWKRWDLMCTPKEVGGLNSGDLKGFNRALLAKQVWRIFTSPSILVSKVIKGPYAYNMSVLDAPVKSNCSVFWRGFVWAHGLFFNGMRKQVGNGTSIKFFHDPWIPKDNTFKPLRIDHSITNDNLLVADLITPSKEWNVQKLKELVSEVDANIISAIPISLGNDEDRWIWHYSKNGKYPVKIGYTVAIMSNVDIASSSVNILKNWWGTLWG
Homology
BLAST of Lcy12g004580 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.9e-27
Identity = 73/274 (26.64%), Postives = 130/274 (47.45%), Query Frame = 0

Query: 21  RNRKEDFKGVKQRVWQTLQGWKGKFFSMGGKEVLIKSVAQAIPTYIMSCFRLPSTLCDDL 80
           R  K+ F  + +RV   + GW+ K  S  G+  L K+V  ++P + MS   LP ++ + L
Sbjct: 7   RINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRL 66

Query: 81  HKMMARFWWGTTEMKKKIHWKRWDLMCTPKEVGGLNSGDLKGFNRALLAKQVWRIFTSPS 140
            ++   F WG+T  KKK H  +W  +C+PK+ GGL     K  NRAL++K  WR+    +
Sbjct: 67  DQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKN 126

Query: 141 ILVSKVIKGPYAYNMSVLDAP---VKSNCSVFWRGF-VWAHGLFFNGMRKQVGNGTSIKF 200
            L + V++  Y     + D+     K + S  WR   +    +  +G+    G+G  I+F
Sbjct: 127 SLWTLVLQKKYHVG-EIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRF 186

Query: 201 FHDPWIPKDNTFKPLRIDHSITNDNLLVADLITPSKEWNVQKLKELVSEVDANIISAIPI 260
           + D W+      +    +     D ++  DL  P + W+  K+    +      + A+ +
Sbjct: 187 WTDRWVSGKPLLELDNGERPTDCDTVVAKDLWIPGRGWDFAKIDPYTTNNTRLELRAVVL 246

Query: 261 SL-GNDEDRWIWHYSKNGKYPVKIGYTVAIMSNV 290
            L     DR  W +S++G++ V+  Y +  +  V
Sbjct: 247 DLVTGARDRLSWKFSQDGQFSVRSAYEMLTVDEV 279

BLAST of Lcy12g004580 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.4e-26
Identity = 59/152 (38.82%), Postives = 82/152 (53.95%), Query Frame = 0

Query: 61  AIPTYIMSCFRLPSTLCDDLHKMMARFWWGTTEMKKKIHWKRWDLMCTPKE-VGGLNSGD 120
           A+P Y MSCFRL   LC  L   M  FWW + E K+KI W  W  +C  KE  GGL   D
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 121 LKGFNRALLAKQVWRIFTSPSILVSKVIKGPYAYNMSVLDAPVKSNCSVFWRGFVWAHGL 180
           L  FN+ALLAKQ +RI   P  L+S++++  Y  + S+++  V +  S  WR  +    L
Sbjct: 62  LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGREL 121

Query: 181 FFNGMRKQVGNGTSIKFFHDPWIPKDNTFKPL 212
              G+ + +G+G   K + D WI  +    PL
Sbjct: 122 LSRGLLRTIGDGIHTKVWLDRWIMDETPLPPL 153

BLAST of Lcy12g004580 vs. ExPASy TrEMBL
Match: A0A803PM68 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.9e-77
Identity = 136/307 (44.30%), Postives = 188/307 (61.24%), Query Frame = 0

Query: 1   MGMQVVDNLGRYLGVSSSFSRNRKEDFKGVKQRVWQTLQGWKGKFFSMGGKEVLIKSVAQ 60
           MG++VVDN G+YLG+ S   R +K+ F+ +K +VW  L+GWKG FFS  GKE+LIK++ Q
Sbjct: 79  MGVKVVDNYGKYLGLPSFVGRTKKQHFEFIKTKVWNKLKGWKGSFFSAAGKEILIKAIVQ 138

Query: 61  AIPTYIMSCFRLPSTLCDDLHKMMARFWWGTTEMKKKIHWKRWDLMCTPKEVGGLNSGDL 120
           AIPTY MSCFRLP    + +H M ARFWWG++E   KIHW +W  +C  KE GGL   DL
Sbjct: 139 AIPTYTMSCFRLPKKTINSIHSMAARFWWGSSEKDAKIHWCKWSTLCKHKEQGGLGFRDL 198

Query: 121 KGFNRALLAKQVWRIFTSPSILVSKVIKGPYAYNMSVLDAPVKSNCSVFWRGFVWAHGLF 180
             FN+ALLAKQ+WR    P+ L SKV+K  Y  N+ VL+A   ++ S  WR  VW   + 
Sbjct: 199 GLFNQALLAKQIWRCIRYPNSLCSKVLKASYFPNVGVLEAKSGNHASFVWRSLVWGKKII 258

Query: 181 FNGMRKQVGNGTSIKFFHDPWIPKDNTFKPLRIDHSITNDNLLVADLITPSKEWNVQKLK 240
             G R ++GNG S++   DPW+P+  TFK    D     + + V DL+  + EW+ + ++
Sbjct: 259 QKGYRWRIGNGNSVRVLEDPWLPRPVTFKV--YDKPSLPEGMYVVDLMKGNGEWDEEFIR 318

Query: 241 ELVSEVDANIISAIPISLGNDEDRWIWHYSKNGKYPVKIGYTVAIMSNVDIASSSVNILK 300
              +  DA +I  +P S    ED+ +WHYSKNG+Y V+ GY +A    V    S+    +
Sbjct: 319 AFFNPTDAELILGMPTSEWEIEDKILWHYSKNGEYSVRSGYRMAAALQVHDIQSNTEATE 378

Query: 301 NWWGTLW 308
            WW  LW
Sbjct: 379 RWWRLLW 383

BLAST of Lcy12g004580 vs. ExPASy TrEMBL
Match: A0A803QJV0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 1.3e-75
Identity = 137/307 (44.63%), Postives = 186/307 (60.59%), Query Frame = 0

Query: 1    MGMQVVDNLGRYLGVSSSFSRNRKEDFKGVKQRVWQTLQGWKGKFFSMGGKEVLIKSVAQ 60
            +G++VVDN G+YLG+ S   RN+K+ F  +K RVW +L+GWKG  FSMGG EVLIK++ Q
Sbjct: 1177 LGVKVVDNHGKYLGLLSLVGRNKKQVFDVIKNRVWNSLRGWKGHMFSMGGNEVLIKAIVQ 1236

Query: 61   AIPTYIMSCFRLPSTLCDDLHKMMARFWWGTTEMKKKIHWKRWDLMCTPKEVGGLNSGDL 120
            AIP Y MS +RL  +    +H+M ARFWWG+T  KKKIHW +W  +C PKE GGL   DL
Sbjct: 1237 AIPAYTMSFYRLTKSTITSIHRMAARFWWGSTAKKKKIHWCKWKYLCRPKEEGGLGFRDL 1296

Query: 121  KGFNRALLAKQVWRIFTSPSILVSKVIKGPYAYNMSVLDAPVKSNCSVFWRGFVWAHGLF 180
            + FN+ALLAKQ+WR    P  L +KV+K  Y  N SVL A   ++ S  WR  VW   + 
Sbjct: 1297 ELFNQALLAKQIWRCLRQPGSLCTKVLKASYFPNKSVLAAKCGAHASFVWRSLVWGKEII 1356

Query: 181  FNGMRKQVGNGTSIKFFHDPWIPKDNTFKPLRIDHSITNDNLLVADLITPSKEWNVQKLK 240
              G R +VGNG  ++   DPW+P+  +FK    D       L V DL  PS  W+   ++
Sbjct: 1357 LKGYRWRVGNGQQVRVLEDPWLPRPTSFKV--YDKPPFPQQLCVVDLTHPSGVWDESFIR 1416

Query: 241  ELVSEVDANIISAIPISLGNDEDRWIWHYSKNGKYPVKIGYTVAIMSNVDIASSSVNILK 300
               +  DA +I  +P      ED+ +WHYS+NG+Y V+ GY +A       A+S   ++K
Sbjct: 1417 ANFNHEDAEMILRLPPLHEGLEDKVMWHYSRNGEYTVRSGYRMAAEMRKSEATSEGQLMK 1476

Query: 301  NWWGTLW 308
            +WW  LW
Sbjct: 1477 DWWSKLW 1481

BLAST of Lcy12g004580 vs. ExPASy TrEMBL
Match: A0A803NHG3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 2.3e-75
Identity = 137/307 (44.63%), Postives = 187/307 (60.91%), Query Frame = 0

Query: 1    MGMQVVDNLGRYLGVSSSFSRNRKEDFKGVKQRVWQTLQGWKGKFFSMGGKEVLIKSVAQ 60
            +G++VVDN G+YLG+ S   RN+K+ F  +K RVW  L+GWKG  FSMG KEVLIK++ Q
Sbjct: 1177 LGVKVVDNHGKYLGLLSLVGRNKKQVFDVIKNRVWNRLRGWKGHMFSMGVKEVLIKAIVQ 1236

Query: 61   AIPTYIMSCFRLPSTLCDDLHKMMARFWWGTTEMKKKIHWKRWDLMCTPKEVGGLNSGDL 120
            AIP Y MSC+RL  +    +H+M ARFWWG+T  KKKIHW +W+ +C PKE GGL   DL
Sbjct: 1237 AIPAYTMSCYRLTKSTITSIHRMAARFWWGSTAKKKKIHWCKWEYLCRPKEEGGLGFRDL 1296

Query: 121  KGFNRALLAKQVWRIFTSPSILVSKVIKGPYAYNMSVLDAPVKSNCSVFWRGFVWAHGLF 180
            + FN+ALLAKQ+WR    P  L SKV+K  Y  + SVL A   ++ S  WR  VW   + 
Sbjct: 1297 ELFNQALLAKQIWRCLRQPGSLCSKVLKASYFPHKSVLAAKCGAHASFVWRSLVWGKEII 1356

Query: 181  FNGMRKQVGNGTSIKFFHDPWIPKDNTFKPLRIDHSITNDNLLVADLITPSKEWNVQKLK 240
              G R +VGNG  ++   DPW+P+  +FK    D       L V DL  PS  W+   ++
Sbjct: 1357 LKGYRWRVGNGQQVRVLEDPWLPRPTSFKV--YDKPPFPQQLCVVDLTHPSGVWDESFIR 1416

Query: 241  ELVSEVDANIISAIPISLGNDEDRWIWHYSKNGKYPVKIGYTVAIMSNVDIASSSVNILK 300
               +  DA +I  +P    + ED+ +WHYS+NG+Y V+ GY +A       A+    ++K
Sbjct: 1417 ANFNREDAEMILRLPPLHEDLEDKVMWHYSRNGEYTVRSGYRMAAEIRKSEATLEGQLMK 1476

Query: 301  NWWGTLW 308
            +WW  LW
Sbjct: 1477 DWWRKLW 1481

BLAST of Lcy12g004580 vs. ExPASy TrEMBL
Match: A0A803PV25 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 2.5e-74
Identity = 137/307 (44.63%), Postives = 188/307 (61.24%), Query Frame = 0

Query: 1    MGMQVVDNLGRYLGVSSSFSRNRKEDFKGVKQRVWQTLQGWKGKFFSMGGKEVLIKSVAQ 60
            MG++VVDN G+YLG+ S   R +K+ F+ +  +VW  L+GWKG FFS  GKEVLIK++ Q
Sbjct: 1294 MGVKVVDNYGKYLGLPSFVGRTKKQHFEFI-NKVWNKLKGWKGSFFSAAGKEVLIKAIVQ 1353

Query: 61   AIPTYIMSCFRLPSTLCDDLHKMMARFWWGTTEMKKKIHWKRWDLMCTPKEVGGLNSGDL 120
            AIPTY MSCFRLP    + +H M ARFWWG++E   KIHW +W ++C  KE GGL   DL
Sbjct: 1354 AIPTYTMSCFRLPKKTINSIHSMAARFWWGSSEKDAKIHWCKWSVLCKHKEQGGLGFRDL 1413

Query: 121  KGFNRALLAKQVWRIFTSPSILVSKVIKGPYAYNMSVLDAPVKSNCSVFWRGFVWAHGLF 180
              FN+ALLAKQ+WR    P+ L SKV+K  Y  N+ VL+A   ++ S  WR  VW   + 
Sbjct: 1414 GLFNQALLAKQIWRCIRYPNSLCSKVLKASYYPNVGVLEAKCGNHASFVWRSLVWGKKII 1473

Query: 181  FNGMRKQVGNGTSIKFFHDPWIPKDNTFKPLRIDHSITNDNLLVADLITPSKEWNVQKLK 240
              G R ++GNG S++   DPW+P+  TFK    D     DNL V DL   + EW+ + ++
Sbjct: 1474 QAGYRWRIGNGNSVRVLDDPWLPRPVTFK--IYDKPPLPDNLHVIDLKKGNGEWDEEFVR 1533

Query: 241  ELVSEVDANIISAIPISLGNDEDRWIWHYSKNGKYPVKIGYTVAIMSNVDIASSSVNILK 300
             + +  DA +I  +  S  + ED+ +WHYSK+G+Y V+ GY +A    V    S+     
Sbjct: 1534 AVFNPTDAELILQMATSECDIEDKILWHYSKDGEYSVRSGYRMAAALEVRDIQSNTEATN 1593

Query: 301  NWWGTLW 308
             WW  LW
Sbjct: 1594 RWWRQLW 1597

BLAST of Lcy12g004580 vs. ExPASy TrEMBL
Match: A0A803PIB6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 5.6e-74
Identity = 135/309 (43.69%), Postives = 186/309 (60.19%), Query Frame = 0

Query: 1    MGMQVVDNLGRYLGVSSSFSRNRKEDFKGVKQRVWQTLQGWKGKFFSMGGKEVLIKSVAQ 60
            +GM +      YLG+ +   R++ + F  +K+R+W+ +  W  K FS+GGKEVL+K+V Q
Sbjct: 1213 LGMPICACHESYLGLPAYSERDKSQLFNNIKERIWKLMHAWSDKIFSIGGKEVLLKAVVQ 1272

Query: 61   AIPTYIMSCFRLPSTLCDDLHKMMARFWWGTTEMKKKIHWKRWDLMCTPKEVGGLNSGDL 120
            AIPTY MSCFRL +  C  +  MMARFWWG++   KKIHWK W  +CT K  GGL     
Sbjct: 1273 AIPTYAMSCFRLSAKFCKQIETMMARFWWGSSTDNKKIHWKNWKSLCTSKRDGGLGFRSF 1332

Query: 121  KGFNRALLAKQVWRIFTSPSILVSKVIKGPYAYNMSVLDAPVKSNCSVFWRGFVWAHGLF 180
              FN+A LAKQ WRIF +P+ L+S+V+KG Y +    + A V    S+ W+G VW   L 
Sbjct: 1333 VHFNQAFLAKQAWRIFQTPNSLLSRVLKGRYYHQNDFMTAKVSGLSSLTWQGIVWGRELL 1392

Query: 181  FNGMRKQVGNGTSIKFFHDPWIPKDNTFKPLRIDHSITNDNLLVADLITPSKEWNVQKLK 240
              G+  ++G+GT +   HD WIP +  FKPLR   S +N   LVAD IT ++EW+++ L 
Sbjct: 1393 SKGLIIKIGDGTGVNCAHDSWIPGNEYFKPLRFTGSCSN---LVADYITDTREWDLELLH 1452

Query: 241  ELVSEVDANIISAIPISLGNDEDRWIWHYSKNGKYPVKIGYTVAI-MSNVDIASSSVNIL 300
               S  D + I  IP+S  +  DRW WHY  +G Y VK GY +A  + N D +SSS +  
Sbjct: 1453 NDFSPADIDRILTIPLSYNSTRDRWRWHYDSSGDYTVKSGYNLACSLENKDHSSSSTS-Q 1512

Query: 301  KNWWGTLWG 309
            + WW   WG
Sbjct: 1513 EAWWQLFWG 1517

BLAST of Lcy12g004580 vs. NCBI nr
Match: XP_030497600.1 (uncharacterized protein LOC115713257 [Cannabis sativa])

HSP 1 Score: 287.7 bits (735), Expect = 1.2e-73
Identity = 135/309 (43.69%), Postives = 186/309 (60.19%), Query Frame = 0

Query: 1    MGMQVVDNLGRYLGVSSSFSRNRKEDFKGVKQRVWQTLQGWKGKFFSMGGKEVLIKSVAQ 60
            +GM +      YLG+ +   R++ + F  +K+R+W+ +  W  K FS+GGKEVL+K+V Q
Sbjct: 753  LGMPICACHESYLGLPAYSERDKSQLFNNIKERIWKLMHAWSDKIFSIGGKEVLLKAVVQ 812

Query: 61   AIPTYIMSCFRLPSTLCDDLHKMMARFWWGTTEMKKKIHWKRWDLMCTPKEVGGLNSGDL 120
            AIPTY MSCFRL +  C  +  MMARFWWG++   KKIHWK W  +CT K  GGL     
Sbjct: 813  AIPTYAMSCFRLSAKFCKQIETMMARFWWGSSTDNKKIHWKNWKSLCTSKRDGGLGFRSF 872

Query: 121  KGFNRALLAKQVWRIFTSPSILVSKVIKGPYAYNMSVLDAPVKSNCSVFWRGFVWAHGLF 180
              FN+A LAKQ WRIF +P+ L+S+V+KG Y +    + A V    S+ W+G VW   L 
Sbjct: 873  VHFNQAFLAKQAWRIFQTPNSLLSRVLKGRYYHQNDFMTAKVSGLSSLTWQGIVWGRELL 932

Query: 181  FNGMRKQVGNGTSIKFFHDPWIPKDNTFKPLRIDHSITNDNLLVADLITPSKEWNVQKLK 240
              G+  ++G+GT +   HD WIP +  FKPLR   S +N   LVAD IT ++EW+++ L 
Sbjct: 933  SKGLIIKIGDGTGVNCAHDSWIPGNEYFKPLRFTGSCSN---LVADYITDTREWDLELLH 992

Query: 241  ELVSEVDANIISAIPISLGNDEDRWIWHYSKNGKYPVKIGYTVAI-MSNVDIASSSVNIL 300
               S  D + I  IP+S  +  DRW WHY  +G Y VK GY +A  + N D +SSS +  
Sbjct: 993  NDFSPADIDRILTIPLSYNSTRDRWRWHYDSSGDYTVKSGYNLACSLENKDHSSSSTS-Q 1052

Query: 301  KNWWGTLWG 309
            + WW   WG
Sbjct: 1053 EAWWQLFWG 1057

BLAST of Lcy12g004580 vs. NCBI nr
Match: XP_030505522.1 (uncharacterized protein LOC115720515 [Cannabis sativa])

HSP 1 Score: 276.6 bits (706), Expect = 2.7e-70
Identity = 116/307 (37.79%), Postives = 187/307 (60.91%), Query Frame = 0

Query: 1   MGMQVVDNLGRYLGVSSSFSRNRKEDFKGVKQRVWQTLQGWKGKFFSMGGKEVLIKSVAQ 60
           + M + + +  YLG+     RN+K  F+ +K ++W  L  W  K FS  GKE+L+K+V Q
Sbjct: 445 LAMTMTEEIETYLGLPMVVGRNKKAIFRPIKDKIWSKLNSWHTKLFSQAGKEILLKAVVQ 504

Query: 61  AIPTYIMSCFRLPSTLCDDLHKMMARFWWGTTEMKKKIHWKRWDLMCTPKEVGGLNSGDL 120
           ++P Y MSCF +P   C+++ K+MAR+WWG+ + K+KIHW+ W  +C  K  GGL     
Sbjct: 505 SMPMYYMSCFIIPEGTCEEIEKLMARYWWGSFQSKRKIHWRAWQKLCFSKRKGGLGFRRF 564

Query: 121 KGFNRALLAKQVWRIFTSPSILVSKVIKGPYAYNMSVLDAPVKSNCSVFWRGFVWAHGLF 180
             +N+ALLAKQ WR+  +P+ ++++V+K  Y    S L+A   S+ S  WRG VW   L 
Sbjct: 565 VQYNQALLAKQAWRVLINPTSILAQVLKARYFPQQSFLEATESSHPSQIWRGIVWGKELL 624

Query: 181 FNGMRKQVGNGTSIKFFHDPWIPKDNTFKPLRIDHSITNDNLLVADLITPSKEWNVQKLK 240
             G+R+++GNG + + F DPWIP+  +F P+  +     + ++V++LI  S +WN+  + 
Sbjct: 625 IKGLRRRIGNGANTRVFKDPWIPRPPSFLPITKE---VGNLMMVSELIEQSGQWNIDLIH 684

Query: 241 ELVSEVDANIISAIPISLGNDEDRWIWHYSKNGKYPVKIGYTVAIMSNVDIASSSVNILK 300
           ++ S  D+ +I +IPI+L   +D W+WH++ +G Y VK GY +AI       SSS  ++ 
Sbjct: 685 QVFSTPDSQLILSIPITLYEHDDDWLWHFTSHGHYSVKSGYNLAIGGENLQPSSSNEVMA 744

Query: 301 NWWGTLW 308
            WW + W
Sbjct: 745 AWWSSYW 748

BLAST of Lcy12g004580 vs. NCBI nr
Match: XP_022131662.1 (uncharacterized protein LOC111004787 [Momordica charantia])

HSP 1 Score: 276.2 bits (705), Expect = 3.5e-70
Identity = 127/271 (46.86%), Postives = 179/271 (66.05%), Query Frame = 0

Query: 38  LQGWKGKFFSMGGKEVLIKSVAQAIPTYIMSCFRLPSTLCDDLHKMMARFWWGTTEMKKK 97
           +QGWK  FFS+GGKEVLIKSV QAIP Y MS FRLP   C+++ +M ARFWWG++   KK
Sbjct: 1   MQGWKRSFFSVGGKEVLIKSVGQAIPAYAMSVFRLPKGFCEEVSQMFARFWWGSSNDTKK 60

Query: 98  IHWKRWDLMCTPKEVGGLNSGDLKGFNRALLAKQVWRIFTSPSILVSKVIKGPYAYNMSV 157
           +HW  W+ MC PKE+GGLN  DL+GFN+AL+AKQVWR+  +P+ILVS+V+K  Y ++  V
Sbjct: 61  LHWMSWERMCLPKELGGLNFRDLEGFNQALVAKQVWRVLQNPNILVSRVLKAKYFHDSLV 120

Query: 158 LDAPVKSNCSVFWRGFVWAHGLFFNGMRKQVGNGTSIKFFHDPWIPKDNTFKPLRIDHSI 217
           L A    N S FW+GF+W   L   G+R +VGNG++I  F DPWIP+  +F+P  I    
Sbjct: 121 LQATHLRNQSYFWKGFIWGRDLLIKGLRSRVGNGSTINIFSDPWIPRPYSFRP--ITAPF 180

Query: 218 TNDNLLVADLITPSKEWNVQKLKELVSEVDANIISAIPISLGNDEDRWIWHYSKNGKYPV 277
              ++ VADLI P+ +W+V  +  +  E D ++I ++P+S  N  D WIWH+ K G Y V
Sbjct: 181 GPYDVKVADLINPNGQWDVHLISYIFCEEDRDLILSMPVSPYNSVDSWIWHFDKRGHYNV 240

Query: 278 KIGYTVAIMSNVDIASSSVNILKNWWGTLWG 309
           K     ++++++ I S+ V +     G + G
Sbjct: 241 K-----SVINSIYIRSAMVYLQVQALGDIIG 264

BLAST of Lcy12g004580 vs. NCBI nr
Match: XP_030509336.1 (uncharacterized protein LOC115724021 [Cannabis sativa])

HSP 1 Score: 275.8 bits (704), Expect = 4.6e-70
Identity = 127/307 (41.37%), Postives = 184/307 (59.93%), Query Frame = 0

Query: 1   MGMQVVDNLGRYLGVSSSFSRNRKEDFKGVKQRVWQTLQGWKGKFFSMGGKEVLIKSVAQ 60
           +GM + D   +YLG+ +   R++K+ F  +K+R+W+ +  W  K FS+GGKEVL+K+V Q
Sbjct: 484 LGMPISDCHEKYLGLPAYSERDKKQLFADIKERIWKLMNSWNDKLFSIGGKEVLLKAVVQ 543

Query: 61  AIPTYIMSCFRLPSTLCDDLHKMMARFWWGTTEMKKKIHWKRWDLMCTPKEVGGLNSGDL 120
           +IPTY+MSCF+LPST    L +MMA FWWG+ + KKK HW++W L+C  K  GG+     
Sbjct: 544 SIPTYVMSCFKLPSTFSHQLEQMMANFWWGSDKDKKKTHWRKWKLLCKTKMDGGMGFRSF 603

Query: 121 KGFNRALLAKQVWRIFTSPSILVSKVIKGPYAYNMSVLDAPVKSNCSVFWRGFVWAHGLF 180
             FN+ALLAKQ WRI   P  L+S+V+KG Y  +   L AP     S+ W+G  W   L 
Sbjct: 604 IHFNQALLAKQAWRIIQFPHSLLSRVLKGRYFSHNDFLQAPKTGCSSLTWQGICWGRDLL 663

Query: 181 FNGMRKQVGNGTSIKFFHDPWIPKDNTFKPLRIDHSITNDNLLVADLITPSKEWNVQKLK 240
             G+R ++G+G+S++   DPWIP+ + F P+       N   LV+  IT  KEWN+  L 
Sbjct: 664 VKGLRLKIGDGSSVQCISDPWIPRHSEFTPICFLGDTQN---LVSYYITDDKEWNLPLLA 723

Query: 241 ELVSEVDANIISAIPISLGNDEDRWIWHYSKNGKYPVKIGYTVAIMSNVDIASSSVNILK 300
              S VD + I +IP+S  +  D+WIWH++ + +Y V+ GY +A        S+S N   
Sbjct: 724 RDFSAVDVDYILSIPLSSSSVSDQWIWHFTNSNEYTVQSGYHLANDLEDSDLSNSSNNQH 783

Query: 301 NWWGTLW 308
            WW   W
Sbjct: 784 TWWKYFW 787

BLAST of Lcy12g004580 vs. NCBI nr
Match: XP_030479133.1 (uncharacterized protein LOC115696372 [Cannabis sativa])

HSP 1 Score: 275.0 bits (702), Expect = 7.8e-70
Identity = 128/307 (41.69%), Postives = 181/307 (58.96%), Query Frame = 0

Query: 1    MGMQVVDNLGRYLGVSSSFSRNRKEDFKGVKQRVWQTLQGWKGKFFSMGGKEVLIKSVAQ 60
            +GM + +    YLG+ +   R++ + F  +K+++W+ +  W  K FS+GGKEVL+K+V Q
Sbjct: 703  LGMPICECHEAYLGLPAYSERDKSQLFSNIKEKIWKLMHAWNDKIFSIGGKEVLLKAVVQ 762

Query: 61   AIPTYIMSCFRLPSTLCDDLHKMMARFWWGTTEMKKKIHWKRWDLMCTPKEVGGLNSGDL 120
            +IPTY MSCFRLP  LC+++  MMA+FWWG++   KKIHWK+W  +C  K  GG+     
Sbjct: 763  SIPTYAMSCFRLPVKLCNEIEAMMAKFWWGSSSDNKKIHWKKWRFLCKSKGDGGMGFRSF 822

Query: 121  KGFNRALLAKQVWRIFTSPSILVSKVIKGPYAYNMSVLDAPVKSNCSVFWRGFVWAHGLF 180
              FN+ALLAKQ WRIF  P+ L+S+V+KG Y      + A      S+ W+G VW   L 
Sbjct: 823  VHFNQALLAKQAWRIFQDPTSLLSRVLKGHYFSQNDFMTARGGGLSSLTWQGIVWGRELL 882

Query: 181  FNGMRKQVGNGTSIKFFHDPWIPKDNTFKPLRIDHSITNDNLLVADLITPSKEWNVQKLK 240
              G+R +VG G +I+   D WIP    FKP     + TN    VAD IT ++EWN++ L+
Sbjct: 883  VKGLRLKVGTGNNIRCAVDSWIPGHKGFKPYCYTGAHTNH---VADYITATREWNIECLQ 942

Query: 241  ELVSEVDANIISAIPISLGNDEDRWIWHYSKNGKYPVKIGYTVAIMSNVDIASSSVNILK 300
               S  D + I  IP+S     DRWIWHY  +G Y V  GYT+A     +  SS  +  +
Sbjct: 943  SDFSTPDVDNILKIPLSFLPVNDRWIWHYEDSGDYSVSSGYTLASSLGEEDLSSCSHTQE 1002

Query: 301  NWWGTLW 308
             WW + W
Sbjct: 1003 TWWKSFW 1006

BLAST of Lcy12g004580 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 152.9 bits (385), Expect = 4.2e-37
Identity = 78/230 (33.91%), Postives = 118/230 (51.30%), Query Frame = 0

Query: 61  AIPTYIMSCFRLPSTLCDDLHKMMARFWWGTTEMKKKIHWKRWDLMCTPKEVGGLNSGDL 120
           A+PTY M+CF LP T+C  +  ++A FWW   +  K +HWK WD +   K  GG+   D+
Sbjct: 2   ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61

Query: 121 KGFNRALLAKQVWRIFTSPSILVSKVIKGPYAYNMSVLDAPVKSNCSVFWRGFVWAHGLF 180
           + FN ALL KQ+WR+ + P  L++KV K  Y +    L+AP+ S  S  W+    +  + 
Sbjct: 62  EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121

Query: 181 FNGMRKQVGNGTSIKFFHDPWIPKDNTFKPLRI------DHSITNDNLLVADLITPS-KE 240
             G R  VGNG  I  +   W+        LR+      +++  +  L V+DLI  S +E
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181

Query: 241 WNVQKLKELVSEVDANIISAIPISLGNDEDRWIWHYSKNGKYPVKIGYTV 284
           W    ++ L  EV+  +I  +        D + W Y+ +G Y VK GY V
Sbjct: 182 WRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWV 231

BLAST of Lcy12g004580 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 121.7 bits (304), Expect = 1.0e-27
Identity = 59/152 (38.82%), Postives = 82/152 (53.95%), Query Frame = 0

Query: 61  AIPTYIMSCFRLPSTLCDDLHKMMARFWWGTTEMKKKIHWKRWDLMCTPKE-VGGLNSGD 120
           A+P Y MSCFRL   LC  L   M  FWW + E K+KI W  W  +C  KE  GGL   D
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 121 LKGFNRALLAKQVWRIFTSPSILVSKVIKGPYAYNMSVLDAPVKSNCSVFWRGFVWAHGL 180
           L  FN+ALLAKQ +RI   P  L+S++++  Y  + S+++  V +  S  WR  +    L
Sbjct: 62  LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGREL 121

Query: 181 FFNGMRKQVGNGTSIKFFHDPWIPKDNTFKPL 212
              G+ + +G+G   K + D WI  +    PL
Sbjct: 122 LSRGLLRTIGDGIHTKVWLDRWIMDETPLPPL 153

BLAST of Lcy12g004580 vs. TAIR 10
Match: AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-11
Identity = 34/115 (29.57%), Postives = 55/115 (47.83%), Query Frame = 0

Query: 11  RYLGVSSSFSRNRKEDFKGVKQRVWQTLQGWKGKFFSMGGKEVLIKSVAQAIPTYIMSCF 70
           RYLG+     +    D+  + +++   +  W  +  S  G+  LI SV  ++  + MS F
Sbjct: 26  RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85

Query: 71  RLPSTLCDDLHKMMARFWWGTTEMKKKIHWKRWDLMCTPKEVGGLNSGDLKGFNR 126
           RLPS    ++  + + F W   E+  K     W  +CTPK+ GGL    LK  N+
Sbjct: 86  RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANK 140

BLAST of Lcy12g004580 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-08
Identity = 34/138 (24.64%), Postives = 63/138 (45.65%), Query Frame = 0

Query: 147 IKGPYAYNMSVLDAPVKSNCSVFWRGFVWAHGLFFNGMRKQVGNGTSIKFFHDPWIPKDN 206
           +K  Y  ++S+LDA V+   S  W   +    L   G R  +G+G +I+   D  +   +
Sbjct: 1   MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIV---D 60

Query: 207 TFKPLRIDHSITNDNLLVADLITPSKE---WNVQKLKELVSEVDANIISAIPISLGNDED 266
           +  P  ++   T   + + +L         W+  K+ + V + D   I  I ++     D
Sbjct: 61  SHPPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPD 120

Query: 267 RWIWHYSKNGKYPVKIGY 282
           + IW+Y+  G+Y V+ GY
Sbjct: 121 KIIWNYNTTGEYTVRSGY 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P0C2F62.9e-2726.64Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
P932951.4e-2638.82Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A803PM681.9e-7744.30Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803QJV01.3e-7544.63Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803NHG32.3e-7544.63Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PV252.5e-7444.63Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PIB65.6e-7443.69Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_030497600.11.2e-7343.69uncharacterized protein LOC115713257 [Cannabis sativa][more]
XP_030505522.12.7e-7037.79uncharacterized protein LOC115720515 [Cannabis sativa][more]
XP_022131662.13.5e-7046.86uncharacterized protein LOC111004787 [Momordica charantia][more]
XP_030509336.14.6e-7041.37uncharacterized protein LOC115724021 [Cannabis sativa][more]
XP_030479133.17.8e-7041.69uncharacterized protein LOC115696372 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
AT4G29090.14.2e-3733.91Ribonuclease H-like superfamily protein [more]
ATMG00310.11.0e-2738.82RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT3G24255.12.3e-1129.57RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT3G09510.11.4e-0824.64Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 2..306
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 2..306

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g004580.1Lcy12g004580.1mRNA