Lcy12g004480 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g004480
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Transpos_assoc domain-containing protein
Location	Chr12: 16332261 .. 16332812 (-)
RNA-Seq Expression	Lcy12g004480
Synteny	Lcy12g004480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGTATTAATTACTTTATTAATGATGTGCTAGATTAATCATTCAATGGACAAGAGTTGGATTGGTAAATCTAGAGTTAGTAAAGAATATTTAGATGGAGTTGCTTCATTTCTGAACTTTGCCTTTGAGAAAGCATCTGAAGATGGAAATATTTTGTGCCCATGCAAAAAATGTGGAAACACATTTTGGTTTAACAGAGACAATGTATACAATCATCTAGTTTGTAATGGATTTGCTATAGGTTATACTTGTTGGGTTTTCCATGGTGAATCTATTTTGGATCGCTCAGTTAGCCAAACTCAGGTTTTGAATGAATCTCCTGTTCATGAAAGTTTAGATGTAAATGACCGTGATAATATGCAAGACATGTTGCAAGAAGCTTTTGGATATTTTGCAAGAAAATGCATTCGAAGGAGTCAATGTCAACGATGATGAATTGATTAGAGAAATATCAAATATTGATGCATCAAATTTTTGTGACTTAGTTAGAGACTGTAATTGTGAGTTATATCCAGGATGTAAAAACTTTTCCAAACTTTCATTTATTGTACGC

mRNA sequence

AGGTATTAATTACTTTATTAATGATGTGCTAGATTAATCATTCAATGGACAAGAGTTGGATTGGTAAATCTAGAGTTAGTAAAGAATATTTAGATGGAGTTGCTTCATTTCTGAACTTTGCCTTTGAGAAAGCATCTGAAGATGGAAATATTTTGTGCCCATGCAAAAAATGTGGAAACACATTTTGGTTTAACAGAGACAATGTATACAATCATCTAGTTTGTAATGGATTTGCTATAGGTTATACTTGTTGGGTTTTCCATGGTGAATCTATTTTGGATCGCTCAGTTAGCCAAACTCAGGTTTTGAATGAATCTCCTGTTCATGAAAGTTTAGATGTAAATGACCGTGATAATATGCAAGACATGTTGCAAGAAGCTTTTGGATATTTTGCAAGAAAATGCATTCGAAGGAGTCAATGTCAACGATGATGAATTGATTAGAGAAATATCAAATATTGATGCATCAAATTTTTGTGACTTAGTTAGAGACTGTAATTGTGAGTTATATCCAGGATGTAAAAACTTTTCCAAACTTTCATTTATTGTACGC

Coding sequence (CDS)

ATGGACAAGAGTTGGATTGGTAAATCTAGAGTTAGTAAAGAATATTTAGATGGAGTTGCTTCATTTCTGAACTTTGCCTTTGAGAAAGCATCTGAAGATGGAAATATTTTGTGCCCATGCAAAAAATGTGGAAACACATTTTGGTTTAACAGAGACAATGTATACAATCATCTAGTTTGTAATGGATTTGCTATAGGTTATACTTGTTGGGTTTTCCATGGTGAATCTATTTTGGATCGCTCAGTTAGCCAAACTCAGGTTTTGAATGAATCTCCTGTTCATGAAAGTTTAGATGTAAATGACCGTGATAATATGCAAGACATGTTGCAAGAAGCTTTTGGATATTTTGCAAGAAAATGCATTCGAAGGAGTCAATGTCAACGATGA

Protein sequence

MDKSWIGKSRVSKEYLDGVASFLNFAFEKASEDGNILCPCKKCGNTFWFNRDNVYNHLVCNGFAIGYTCWVFHGESILDRSVSQTQVLNESPVHESLDVNDRDNMQDMLQEAFGYFARKCIRRSQCQR

Homology

[Close]

BLAST of Lcy12g004480 vs. ExPASy TrEMBL
Match: A0A6P5GSB3 (uncharacterized protein LOC109726394 isoform X1 OS=Ananas comosus OX=4615 GN=LOC109726394 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 7.6e-25
Identity = 60/121 (49.59%), Postives = 77/121 (63.64%), Query Frame = 0


Query: 1   MDKSWIGKSRVSKEYLDGVASFLNFAFEKASEDGNILCPCKKCGNTFWFNRDNVYNHLVC 60
           MDKSWI KSR+SKEY DGV  FLNFAFE++S+DG ILCPC +C N  W  R+ V  HLVC
Sbjct: 1   MDKSWIRKSRLSKEYFDGVNDFLNFAFERSSQDGKILCPCSRCSNINWHTREVVKEHLVC 60

Query: 61  NGFAIGYTCWVFHGESILDRSVSQT---------QVLNESPVHESLDVNDRDNMQDMLQE 113
           NGF  GYT W  HGESI   S S           ++L  +P  + +  +  D+M+ +L++
Sbjct: 61  NGFLRGYTRWACHGESISSSSSSSNTTYYLQDPLRLLESTP--DQMGSSRNDDMEGLLRD 119

[Close]

BLAST of Lcy12g004480 vs. ExPASy TrEMBL
Match: A0A6P5EIQ7 (uncharacterized protein LOC109704975 OS=Ananas comosus OX=4615 GN=LOC109704975 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 7.6e-25
Identity = 61/120 (50.83%), Postives = 75/120 (62.50%), Query Frame = 0


Query: 1   MDKSWIGKSRVSKEYLDGVASFLNFAFEKASEDGNILCPCKKCGNTFWFNRDNVYNHLVC 60
           MDKSWI KSR+SKEY DGV  FLNFAFE++S+D  ILCPC +C N  W  R+ V  HLVC
Sbjct: 1   MDKSWIHKSRLSKEYFDGVNDFLNFAFERSSQDEKILCPCSRCSNINWHTREVVKEHLVC 60

Query: 61  NGFAIGYTCWVFHGESILDRSVSQTQV--------LNESPVHESLDVNDRDNMQDMLQEA 113
           NGF  GYT W  HGESI   S S            L ES  H+ +  +  D+M+ +L++A
Sbjct: 61  NGFLRGYTRWACHGESISSSSSSSNTAYYLQDPLRLRES-THDQMGSSRNDDMEGLLRDA 119

[Close]

BLAST of Lcy12g004480 vs. ExPASy TrEMBL
Match: A0A6P5H0V7 (uncharacterized protein LOC109726394 isoform X2 OS=Ananas comosus OX=4615 GN=LOC109726394 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 7.6e-25
Identity = 60/121 (49.59%), Postives = 77/121 (63.64%), Query Frame = 0


Query: 1   MDKSWIGKSRVSKEYLDGVASFLNFAFEKASEDGNILCPCKKCGNTFWFNRDNVYNHLVC 60
           MDKSWI KSR+SKEY DGV  FLNFAFE++S+DG ILCPC +C N  W  R+ V  HLVC
Sbjct: 1   MDKSWIRKSRLSKEYFDGVNDFLNFAFERSSQDGKILCPCSRCSNINWHTREVVKEHLVC 60

Query: 61  NGFAIGYTCWVFHGESILDRSVSQT---------QVLNESPVHESLDVNDRDNMQDMLQE 113
           NGF  GYT W  HGESI   S S           ++L  +P  + +  +  D+M+ +L++
Sbjct: 61  NGFLRGYTRWACHGESISSSSSSSNTTYYLQDPLRLLESTP--DQMGSSRNDDMEGLLRD 119

[Close]

BLAST of Lcy12g004480 vs. ExPASy TrEMBL
Match: A0A6P5GDG8 (uncharacterized protein LOC109722895 OS=Ananas comosus OX=4615 GN=LOC109722895 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 7.6e-25
Identity = 59/116 (50.86%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 1   MDKSWIGKSRVSKEYLDGVASFLNFAFEKASEDGNILCPCKKCGNTFWFNRDNVYNHLVC 60
           MDKSW+ K R S++YL GV+ FL+FAF KAS++G ILCPCK C N FW +R+ V  HL+C
Sbjct: 39  MDKSWMNKPRASEKYLRGVSDFLDFAFFKASQEGLILCPCKNCSNRFWNSREIVLEHLIC 98

Query: 61  NGFAIGYTCWVFHGESILDRSVSQTQVLNESPVHESLDVNDRDNMQDMLQEAFGYF 117
           +GF   YTCWV+HGE I   S   +   N S           DNM++ML +AFG F
Sbjct: 99  DGFVHDYTCWVYHGEDITS-SFLGSDYGNSSAC---------DNMREMLNDAFGCF 144

[Close]

BLAST of Lcy12g004480 vs. ExPASy TrEMBL
Match: A0A6V7NY73 (Transpos_assoc domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS6505 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.8e-24
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 0


Query: 6   IGKSRVSKEYLDGVASFLNFAFEKASEDGNILCPCKKCGNTFWFNRDNVYNHLVCNGFAI 65
           + K RVSK+YLDGV +FL+FAF KA  +G+ILCPCK+C N FW N+D V  HL+C+GF  
Sbjct: 17  LNKYRVSKKYLDGVLNFLDFAFLKAVREGSILCPCKRCANCFWQNKDTVLEHLICDGFLE 76

Query: 66  GYTCWVFHGESILDRSVSQTQVLNESPVHESLDVNDRDNMQDMLQEAFGYF 117
           GYT W++HGE I           + S  +   ++N  D+M+ ML EAFG F
Sbjct: 77  GYTSWIYHGEDI----------TSPSSTYNYDNLNTNDDMRGMLNEAFGMF 117

[Close]

BLAST of Lcy12g004480 vs. NCBI nr
Match: XP_020111541.1 (uncharacterized protein LOC109726394 isoform X1 [Ananas comosus] >XP_020111542.1 uncharacterized protein LOC109726394 isoform X1 [Ananas comosus])

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-24
Identity = 60/121 (49.59%), Postives = 77/121 (63.64%), Query Frame = 0


Query: 1   MDKSWIGKSRVSKEYLDGVASFLNFAFEKASEDGNILCPCKKCGNTFWFNRDNVYNHLVC 60
           MDKSWI KSR+SKEY DGV  FLNFAFE++S+DG ILCPC +C N  W  R+ V  HLVC
Sbjct: 1   MDKSWIRKSRLSKEYFDGVNDFLNFAFERSSQDGKILCPCSRCSNINWHTREVVKEHLVC 60

Query: 61  NGFAIGYTCWVFHGESILDRSVSQT---------QVLNESPVHESLDVNDRDNMQDMLQE 113
           NGF  GYT W  HGESI   S S           ++L  +P  + +  +  D+M+ +L++
Sbjct: 61  NGFLRGYTRWACHGESISSSSSSSNTTYYLQDPLRLLESTP--DQMGSSRNDDMEGLLRD 119

[Close]

BLAST of Lcy12g004480 vs. NCBI nr
Match: XP_020111543.1 (uncharacterized protein LOC109726394 isoform X2 [Ananas comosus])

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-24
Identity = 60/121 (49.59%), Postives = 77/121 (63.64%), Query Frame = 0


Query: 1   MDKSWIGKSRVSKEYLDGVASFLNFAFEKASEDGNILCPCKKCGNTFWFNRDNVYNHLVC 60
           MDKSWI KSR+SKEY DGV  FLNFAFE++S+DG ILCPC +C N  W  R+ V  HLVC
Sbjct: 1   MDKSWIRKSRLSKEYFDGVNDFLNFAFERSSQDGKILCPCSRCSNINWHTREVVKEHLVC 60

Query: 61  NGFAIGYTCWVFHGESILDRSVSQT---------QVLNESPVHESLDVNDRDNMQDMLQE 113
           NGF  GYT W  HGESI   S S           ++L  +P  + +  +  D+M+ +L++
Sbjct: 61  NGFLRGYTRWACHGESISSSSSSSNTTYYLQDPLRLLESTP--DQMGSSRNDDMEGLLRD 119

[Close]

BLAST of Lcy12g004480 vs. NCBI nr
Match: XP_020081325.1 (uncharacterized protein LOC109704975 [Ananas comosus])

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-24
Identity = 61/120 (50.83%), Postives = 75/120 (62.50%), Query Frame = 0


Query: 1   MDKSWIGKSRVSKEYLDGVASFLNFAFEKASEDGNILCPCKKCGNTFWFNRDNVYNHLVC 60
           MDKSWI KSR+SKEY DGV  FLNFAFE++S+D  ILCPC +C N  W  R+ V  HLVC
Sbjct: 1   MDKSWIHKSRLSKEYFDGVNDFLNFAFERSSQDEKILCPCSRCSNINWHTREVVKEHLVC 60

Query: 61  NGFAIGYTCWVFHGESILDRSVSQTQV--------LNESPVHESLDVNDRDNMQDMLQEA 113
           NGF  GYT W  HGESI   S S            L ES  H+ +  +  D+M+ +L++A
Sbjct: 61  NGFLRGYTRWACHGESISSSSSSSNTAYYLQDPLRLRES-THDQMGSSRNDDMEGLLRDA 119

[Close]

BLAST of Lcy12g004480 vs. NCBI nr
Match: XP_020106661.1 (uncharacterized protein LOC109722895 [Ananas comosus])

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-24
Identity = 59/116 (50.86%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 1   MDKSWIGKSRVSKEYLDGVASFLNFAFEKASEDGNILCPCKKCGNTFWFNRDNVYNHLVC 60
           MDKSW+ K R S++YL GV+ FL+FAF KAS++G ILCPCK C N FW +R+ V  HL+C
Sbjct: 39  MDKSWMNKPRASEKYLRGVSDFLDFAFFKASQEGLILCPCKNCSNRFWNSREIVLEHLIC 98

Query: 61  NGFAIGYTCWVFHGESILDRSVSQTQVLNESPVHESLDVNDRDNMQDMLQEAFGYF 117
           +GF   YTCWV+HGE I   S   +   N S           DNM++ML +AFG F
Sbjct: 99  DGFVHDYTCWVYHGEDITS-SFLGSDYGNSSAC---------DNMREMLNDAFGCF 144

[Close]

BLAST of Lcy12g004480 vs. NCBI nr
Match: CAD1823294.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 120.9 bits (302), Expect = 7.8e-24
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 0


Query: 6   IGKSRVSKEYLDGVASFLNFAFEKASEDGNILCPCKKCGNTFWFNRDNVYNHLVCNGFAI 65
           + K RVSK+YLDGV +FL+FAF KA  +G+ILCPCK+C N FW N+D V  HL+C+GF  
Sbjct: 17  LNKYRVSKKYLDGVLNFLDFAFLKAVREGSILCPCKRCANCFWQNKDTVLEHLICDGFLE 76

Query: 66  GYTCWVFHGESILDRSVSQTQVLNESPVHESLDVNDRDNMQDMLQEAFGYF 117
           GYT W++HGE I           + S  +   ++N  D+M+ ML EAFG F
Sbjct: 77  GYTSWIYHGEDI----------TSPSSTYNYDNLNTNDDMRGMLNEAFGMF 117

The following BLAST results are available for this feature:

BLAST of Lcy12g004480 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g004480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P5GSB3	7.6e-25	49.59	uncharacterized protein LOC109726394 isoform X1 OS=Ananas comosus OX=4615 GN=LOC...	[more]
A0A6P5EIQ7	7.6e-25	50.83	uncharacterized protein LOC109704975 OS=Ananas comosus OX=4615 GN=LOC109704975 P...	[more]
A0A6P5H0V7	7.6e-25	49.59	uncharacterized protein LOC109726394 isoform X2 OS=Ananas comosus OX=4615 GN=LOC...	[more]
A0A6P5GDG8	7.6e-25	50.86	uncharacterized protein LOC109722895 OS=Ananas comosus OX=4615 GN=LOC109722895 P...	[more]
A0A6V7NY73	3.8e-24	49.55	Transpos_assoc domain-containing protein OS=Ananas comosus var. bracteatus OX=29...	[more]

BLAST of Lcy12g004480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_020111541.1	1.6e-24	49.59	uncharacterized protein LOC109726394 isoform X1 [Ananas comosus] >XP_020111542.1...	[more]
XP_020111543.1	1.6e-24	49.59	uncharacterized protein LOC109726394 isoform X2 [Ananas comosus]	[more]
XP_020081325.1	1.6e-24	50.83	uncharacterized protein LOC109704975 [Ananas comosus]	[more]
XP_020106661.1	1.6e-24	50.86	uncharacterized protein LOC109722895 [Ananas comosus]	[more]
CAD1823294.1	7.8e-24	49.55	unnamed protein product [Ananas comosus var. bracteatus]	[more]

BLAST of Lcy12g004480 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029480	Transposase-associated domain	PFAM	PF13963	Transpos_assoc	coord: 3..75 e-value: 6.6E-26 score: 90.3
None	No IPR available	PANTHER	PTHR10775:SF145	TRANSPOSASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..113
None	No IPR available	PANTHER	PTHR10775	UNCHARACTERIZED	coord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g004480.1	Lcy12g004480.1	mRNA