Lcy12g004200 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GGCCTAATAAAGGAATGCAATCGTATAATGGCGAAGTTCTGGTGGGGGGAGGAGGGGGTGAAAAGGAGGATCCATTAGGCCTCGTGGAGGAGAGTGAGTGTGTCAAAGTTTAATGGAGGGTTGGGTTTTAGGGATCTTGAACTGTTTAACAGGGCCCTGTTGGCGAAACAAGGGTGGAGGTTAATAGACAATCCTGATTCCCTTTTGGGGAAAGTTCTTAAGGGTAGGTACTTCTCGAGATGTTCATTTCTAGAGGCCGAAAGGAGAAGCAACGCCTCTTATGTGTGGAGGAGTTTGGTGTGGGGAAGGGGTCTTTTGGAGGAAGGTTTACGGTGGAGGGTGGGAAATGGGAGTTCTGTTAAAATATTGGGGGATAGGTGGATTCCGAGGGCTCCGTCACTGAGGATTCTAATGGGGGAAGGGATTGATCCAGATGCGAGAGTATCAGAGCTTTTGAGTCCTGAAGGGGCATGGAATGTGGATATGGTTCAGGCGATGTTTAAAGGGGATGATGTGCAGGCCATCCTTGGCATTCCTCGTCCTAGAATGGCCTGCCCGGATAGGCTAGTTTGGCATTGTGAGAAGGATGGGATCTACTCGGTGAAGAGTGGGTACAATCTAGCTTGTTCCATTAGAGAGATTCCTAGTTCCTCAAATTGGGAGGAAGTGCAGAAATGGTGGAAGTTCTTCTGGACAAGGGAAATTCCTAGTAAGATAAAATTTTTTGCTTGGAGGCTGTTCCATGACCTCCTGCCAACTGAAACAAATCTAAGGAGGAGGGGGATGGATATTTATCAAGGGTGTCAAAGGTGCAAATTGGAAACGGAGACTACCTTTCATGCCATCTGGGAATGTGTGGAAGTGAAGTGTTGGTGGCGATGCTCGCCGTTTTATCCCCGCTCAGGTCCCCCGAGCATAAGAAGTGTGGCTGACCTGCTGTGGTGGTGCAGGGAGAATTTGTTGAATGAGTGTTTTGAGGAGTTCGTGGTGATGTGCTAG GGCCTAATAAAGGAATGCAATCGTATAATGGCGAAGTTCTGGTGGGGGGAGGAGGGGGTGAAAAGGAGGATCCATTAGGCCTCGTGGAGGAGAGTGAGGCCCTGTTGGCGAAACAAGGGTGGAGGTTAATAGACAATCCTGATTCCCTTTTGGGGAAAGTTCTTAAGGGTAGGTACTTCTCGAGATGTTCATTTCTAGAGGCCGAAAGGAGAAGCAACGCCTCTTATGTGTGGAGGAGTTTGGTGTGGGGAAGGGGTCTTTTGGAGGAAGGTTTACGGTGGAGGGTGGGAAATGGGAGTTCTGTTAAAATATTGGGGGATAGGTGGATTCCGAGGGCTCCGTCACTGAGGATTCTAATGGGGGAAGGGATTGATCCAGATGCGAGAGTATCAGAGCTTTTGAGTCCTGAAGGGGCATGGAATGTGGATATGGTTCAGGCGATGTTTAAAGGGGATGATGTGCAGGCCATCCTTGGCATTCCTCGTCCTAGAATGGCCTGCCCGGATAGGCTAGTTTGGCATTGTGAGAAGGATGGGATCTACTCGGTGAAGAGTGGGTACAATCTAGCTTGTTCCATTAGAGAGATTCCTAGTTCCTCAAATTGGGAGGAAGTGCAGAAATGGTGGAAGTTCTTCTGGACAAGGGAAATTCCTAGTAAGATAAAATTTTTTGCTTGGAGGCTGTTCCATGACCTCCTGCCAACTGAAACAAATCTAAGGAGGAGGGGGATGGATATTTATCAAGGGTGTCAAAGGTGCAAATTGGAAACGGAGACTACCTTTCATGCCATCTGGGAATGTGTGGAAGTGAAGTGTTGGTGGCGATGCTCGCCGTTTTATCCCCGCTCAGGTCCCCCGAGCATAAGAAGTGTGGCTGACCTGCTGTGGTGGTGCAGGGAGAATTTGTTGAATGAGTGTTTTGAGGAGTTCGTGGTGATGTGCTAG GGCCTAATAAAGGAATGCAATCGTATAATGGCGAAGTTCTGGTGGGGGGAGGAGGGGGTGAAAAGGAGGATCCATTAGGCCTCGTGGAGGAGAGTGAGGCCCTGTTGGCGAAACAAGGGTGGAGGTTAATAGACAATCCTGATTCCCTTTTGGGGAAAGTTCTTAAGGGTAGGTACTTCTCGAGATGTTCATTTCTAGAGGCCGAAAGGAGAAGCAACGCCTCTTATGTGTGGAGGAGTTTGGTGTGGGGAAGGGGTCTTTTGGAGGAAGGTTTACGGTGGAGGGTGGGAAATGGGAGTTCTGTTAAAATATTGGGGGATAGGTGGATTCCGAGGGCTCCGTCACTGAGGATTCTAATGGGGGAAGGGATTGATCCAGATGCGAGAGTATCAGAGCTTTTGAGTCCTGAAGGGGCATGGAATGTGGATATGGTTCAGGCGATGTTTAAAGGGGATGATGTGCAGGCCATCCTTGGCATTCCTCGTCCTAGAATGGCCTGCCCGGATAGGCTAGTTTGGCATTGTGAGAAGGATGGGATCTACTCGGTGAAGAGTGGGTACAATCTAGCTTGTTCCATTAGAGAGATTCCTAGTTCCTCAAATTGGGAGGAAGTGCAGAAATGGTGGAAGTTCTTCTGGACAAGGGAAATTCCTAGTAAGATAAAATTTTTTGCTTGGAGGCTGTTCCATGACCTCCTGCCAACTGAAACAAATCTAAGGAGGAGGGGGATGGATATTTATCAAGGGTGTCAAAGGTGCAAATTGGAAACGGAGACTACCTTTCATGCCATCTGGGAATGTGTGGAAGTGAAGTGTTGGTGGCGATGCTCGCCGTTTTATCCCCGCTCAGGTCCCCCGAGCATAAGAAGTGTGGCTGACCTGCTGTGGTGGTGCAGGGAGAATTTGTTGAATGAGTGTTTTGAGGAGTTCGTGGTGATGTGCTAG PNKGMQSYNGEVLVGGGGGEKEDPLGLVEESEALLAKQGWRLIDNPDSLLGKVLKGRYFSRCSFLEAERRSNASYVWRSLVWGRGLLEEGLRWRVGNGSSVKILGDRWIPRAPSLRILMGEGIDPDARVSELLSPEGAWNVDMVQAMFKGDDVQAILGIPRPRMACPDRLVWHCEKDGIYSVKSGYNLACSIREIPSSSNWEEVQKWWKFFWTREIPSKIKFFAWRLFHDLLPTETNLRRRGMDIYQGCQRCKLETETTFHAIWECVEVKCWWRCSPFYPRSGPPSIRSVADLLWWCRENLLNECFEEFVVMC Homology
BLAST of Lcy12g004200 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 2.4e-13 Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 0
BLAST of Lcy12g004200 vs. ExPASy TrEMBL
Match: A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1) HSP 1 Score: 256.1 bits (653), Expect = 1.8e-64 Identity = 122/252 (48.41%), Postives = 163/252 (64.68%), Query Frame = 0
BLAST of Lcy12g004200 vs. ExPASy TrEMBL
Match: A0A803PPQ0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 5.9e-63 Identity = 113/285 (39.65%), Postives = 168/285 (58.95%), Query Frame = 0
BLAST of Lcy12g004200 vs. ExPASy TrEMBL
Match: A0A803Q6D6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 250.4 bits (638), Expect = 1.0e-62 Identity = 115/285 (40.35%), Postives = 166/285 (58.25%), Query Frame = 0
BLAST of Lcy12g004200 vs. ExPASy TrEMBL
Match: A0A803QPB7 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 248.8 bits (634), Expect = 2.9e-62 Identity = 119/295 (40.34%), Postives = 174/295 (58.98%), Query Frame = 0
BLAST of Lcy12g004200 vs. ExPASy TrEMBL
Match: A0A803QLY3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 246.1 bits (627), Expect = 1.9e-61 Identity = 122/299 (40.80%), Postives = 170/299 (56.86%), Query Frame = 0
BLAST of Lcy12g004200 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia]) HSP 1 Score: 256.1 bits (653), Expect = 3.8e-64 Identity = 122/252 (48.41%), Postives = 163/252 (64.68%), Query Frame = 0
BLAST of Lcy12g004200 vs. NCBI nr
Match: XP_030483251.1 (uncharacterized protein LOC115699848 [Cannabis sativa]) HSP 1 Score: 246.9 bits (629), Expect = 2.3e-61 Identity = 117/283 (41.34%), Postives = 163/283 (57.60%), Query Frame = 0
BLAST of Lcy12g004200 vs. NCBI nr
Match: XP_030505362.1 (uncharacterized protein LOC115720349 [Cannabis sativa]) HSP 1 Score: 240.0 bits (611), Expect = 2.8e-59 Identity = 116/285 (40.70%), Postives = 164/285 (57.54%), Query Frame = 0
BLAST of Lcy12g004200 vs. NCBI nr
Match: XP_024037590.1 (uncharacterized protein LOC112097210 [Citrus clementina]) HSP 1 Score: 233.0 bits (593), Expect = 3.4e-57 Identity = 107/248 (43.15%), Postives = 150/248 (60.48%), Query Frame = 0
BLAST of Lcy12g004200 vs. NCBI nr
Match: XP_024950112.1 (uncharacterized protein LOC112496847 [Citrus sinensis]) HSP 1 Score: 227.3 bits (578), Expect = 1.9e-55 Identity = 107/283 (37.81%), Postives = 160/283 (56.54%), Query Frame = 0
BLAST of Lcy12g004200 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 130.2 bits (326), Expect = 2.9e-30 Identity = 79/277 (28.52%), Postives = 124/277 (44.77%), Query Frame = 0
BLAST of Lcy12g004200 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 77.8 bits (190), Expect = 1.7e-14 Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 0
BLAST of Lcy12g004200 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 57.8 bits (138), Expect = 1.8e-08 Identity = 29/77 (37.66%), Postives = 37/77 (48.05%), Query Frame = 0
BLAST of Lcy12g004200 vs. TAIR 10
Match: AT2G22440.1 (BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT4G29090.1); Has 208 Blast hits to 191 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 47.0 bits (110), Expect = 3.3e-05 Identity = 31/92 (33.70%), Postives = 43/92 (46.74%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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