Lcy12g004100 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g004100
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	(thale cress) hypothetical protein
Location	Chr12: 13762040 .. 13762462 (-)
RNA-Seq Expression	Lcy12g004100
Synteny	Lcy12g004100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAATTCAACTCATCTTTCCATCATCTTATTACTTTCTTCTTTCCATCTTATTACTGTCTCTACACCATGGGAGGTAGGCAAAAAAAGTCTCATTCTTCCTTCTCGATCTTCGGCCGCCTTTTCAAATCCAAAAGGAATGGAAAAGGAGATCATTATGACCATGATGGTTCTCGGAACGAAGTAAGATATGCAGACAAAGTGTTGTTGAGTGATGAGGAAAGTGCTCACCAATGGATTGTCGAGCTTGGTCTTGATAGAAAAGCTAAAGACTACATTGATAGGTTCTATGAGAACCGTGTCGTCGAAACCGAACGCCAAACTGTTACCATTCTTCCTTTTGAAACTAGGCCTGAGATTTAAATATCTTTTATGTTTATATCTTTTTTTTTACTATGTATGTATAGCCTCAATAATCTATAT

mRNA sequence

AAACAATTCAACTCATCTTTCCATCATCTTATTACTTTCTTCTTTCCATCTTATTACTGTCTCTACACCATGGGAGGTAGGCAAAAAAAGTCTCATTCTTCCTTCTCGATCTTCGGCCGCCTTTTCAAATCCAAAAGGAATGGAAAAGGAGATCATTATGACCATGATGGTTCTCGGAACGAAGTAAGATATGCAGACAAAGTGTTGTTGAGTGATGAGGAAAGTGCTCACCAATGGATTGTCGAGCTTGGTCTTGATAGAAAAGCTAAAGACTACATTGATAGGTTCTATGAGAACCGTGTCGTCGAAACCGAACGCCAAACTGTTACCATTCTTCCTTTTGAAACTAGGCCTGAGATTTAAATATCTTTTATGTTTATATCTTTTTTTTTACTATGTATGTATAGCCTCAATAATCTATAT

Coding sequence (CDS)

ATGGGAGGTAGGCAAAAAAAGTCTCATTCTTCCTTCTCGATCTTCGGCCGCCTTTTCAAATCCAAAAGGAATGGAAAAGGAGATCATTATGACCATGATGGTTCTCGGAACGAAGTAAGATATGCAGACAAAGTGTTGTTGAGTGATGAGGAAAGTGCTCACCAATGGATTGTCGAGCTTGGTCTTGATAGAAAAGCTAAAGACTACATTGATAGGTTCTATGAGAACCGTGTCGTCGAAACCGAACGCCAAACTGTTACCATTCTTCCTTTTGAAACTAGGCCTGAGATTTAA

Protein sequence

MGGRQKKSHSSFSIFGRLFKSKRNGKGDHYDHDGSRNEVRYADKVLLSDEESAHQWIVELGLDRKAKDYIDRFYENRVVETERQTVTILPFETRPEI

Homology

[Close]

BLAST of Lcy12g004100 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.1e-23
Identity = 62/97 (63.92%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 2  GGRQKKSHSSFSIFGRLFKSKRNGKGDHYDHDGS-RNEVRYADKVLLSDEESAHQWIVEL 61
          G RQKKSHSSFSIF   FKSKR  KGDHYDH G+  +E+  ++KV  SDE+ AH WI E 
Sbjct: 3  GNRQKKSHSSFSIFS-FFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 62

Query: 62 GLDRKAKDYIDRFYENRVVETERQTVTILPFETRPEI 98
          G+DRKAKDYIDR Y NRV E+ERQTVTI P  T+  +
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Lcy12g004100 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.1e-22
Identity = 60/97 (61.86%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 2  GGRQKKSHSSFSIFGRLFKSKRNGKGDHYDHDGS-RNEVRYADKVLLSDEESAHQWIVEL 61
          G RQKKSHSSFSIF   FKS+R  KGDHYDH G+  +E+  ++KV  SDE+ AH W+ E 
Sbjct: 3  GNRQKKSHSSFSIFS-FFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 62

Query: 62 GLDRKAKDYIDRFYENRVVETERQTVTILPFETRPEI 98
          G+DRKAKDYIDR Y NRV E+ERQTVTI P  T+  +
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Lcy12g004100 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.3e-20
Identity = 59/100 (59.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 1  MGG--RQKKSHSSFSIFGRLFKSKRNGKGDHYDHDGS-RNEVRYADKVLLSDEESAHQWI 60
          MGG  RQKKSHSSFSIF   FKS+R  KGD+ +H GS  +E+  + KV  SDE+ AH W+
Sbjct: 1  MGGNNRQKKSHSSFSIFS-FFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWV 60

Query: 61 VELGLDRKAKDYIDRFYENRVVETERQTVTILPFETRPEI 98
           E G+DRKAKDYIDR Y NRV E+ERQT+TI P  T+  +
Sbjct: 61 AEPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of Lcy12g004100 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.5e-20
Identity = 58/93 (62.37%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 1  MGG--RQKKSHSSFSIFGRLFKSKRNGKGDHYDHDGS-RNEVRYADKVLLSDEESAHQWI 60
          MGG  RQKK+H+SFSIF   FKS+R  KGDH +H GS  +E+  + KV  SDE+ AH W+
Sbjct: 1  MGGNNRQKKAHASFSIFS-FFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWV 60

Query: 61 VELGLDRKAKDYIDRFYENRVVETERQTVTILP 91
           E G+DRKAKDYIDR Y NRV E+ERQTVTI P
Sbjct: 61 AEPGIDRKAKDYIDRIYRNRVFESERQTVTISP 92

[Close]

BLAST of Lcy12g004100 vs. ExPASy TrEMBL
Match: A0A0A0K8W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 1  MGG--RQKKSHSSFSIFGRLFKSKRNGKGDHYDHDGSRNEVRYADKVLLSDEESAHQWIV 60
          MGG  RQKK+HSSFSIF   FKSKR  KGD Y+H  +  +V  + KV  SDE+  ++W+ 
Sbjct: 1  MGGSHRQKKTHSSFSIFS-FFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVA 60

Query: 61 ELGLDRKAKDYIDRFYENRVVETERQTVTILP 91
          E G+DRKAKDYIDR Y+NRV ETERQTVTI P
Sbjct: 61 EPGIDRKAKDYIDRIYKNRVFETERQTVTIHP 91

[Close]

BLAST of Lcy12g004100 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 62/97 (63.92%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 2  GGRQKKSHSSFSIFGRLFKSKRNGKGDHYDHDGS-RNEVRYADKVLLSDEESAHQWIVEL 61
          G RQKKSHSSFSIF   FKSKR  KGDHYDH G+  +E+  ++KV  SDE+ AH WI E 
Sbjct: 3  GNRQKKSHSSFSIFS-FFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 62

Query: 62 GLDRKAKDYIDRFYENRVVETERQTVTILPFETRPEI 98
          G+DRKAKDYIDR Y NRV E+ERQTVTI P  T+  +
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Lcy12g004100 vs. NCBI nr
Match: KAG6588556.1 (hypothetical protein SDJN03_17121, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.1 bits (266), Expect = 8.8e-20
Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 2  GGRQKKSHSSFSIFGRLFKSKRNGKGDHYDHDGSRNEVRYADKVLLSDEESAHQWIVELG 61
          G + KKSHSSFS FG  FKSKR  KG+HY+HD    E+    KV  SD +  H+W+ E G
Sbjct: 3  GNKHKKSHSSFSFFG-FFKSKRARKGEHYEHD----ELSCPRKVWPSDADKCHRWVAEPG 62

Query: 62 LDRKAKDYIDRFYENRVVETERQTVTILPFETRPEI 98
          +DRKAKDYIDR + NRV+ETERQTVT+ P  TR ++
Sbjct: 63 IDRKAKDYIDRIHRNRVLETERQTVTVAPSGTRTDV 93

[Close]

BLAST of Lcy12g004100 vs. NCBI nr
Match: KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.5e-19
Identity = 59/100 (59.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 1  MGG--RQKKSHSSFSIFGRLFKSKRNGKGDHYDHDGS-RNEVRYADKVLLSDEESAHQWI 60
          MGG  RQKKSHSSFSIF   FKS+R  KGD+ +H GS  +E+  + KV  SDE+ AH W+
Sbjct: 1  MGGNNRQKKSHSSFSIFS-FFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWV 60

Query: 61 VELGLDRKAKDYIDRFYENRVVETERQTVTILPFETRPEI 98
           E G+DRKAKDYIDR Y NRV E+ERQT+TI P  T+  +
Sbjct: 61 AEPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of Lcy12g004100 vs. NCBI nr
Match: KGN45869.1 (hypothetical protein Csa_005516 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-19
Identity = 58/93 (62.37%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 1  MGG--RQKKSHSSFSIFGRLFKSKRNGKGDHYDHDGS-RNEVRYADKVLLSDEESAHQWI 60
          MGG  RQKK+H+SFSIF   FKS+R  KGDH +H GS  +E+  + KV  SDE+ AH W+
Sbjct: 1  MGGNNRQKKAHASFSIFS-FFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWV 60

Query: 61 VELGLDRKAKDYIDRFYENRVVETERQTVTILP 91
           E G+DRKAKDYIDR Y NRV E+ERQTVTI P
Sbjct: 61 AEPGIDRKAKDYIDRIYRNRVFESERQTVTISP 92

[Close]

BLAST of Lcy12g004100 vs. NCBI nr
Match: KGN45873.1 (hypothetical protein Csa_005148 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 2.6e-19
Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 1  MGG--RQKKSHSSFSIFGRLFKSKRNGKGDHYDHDGSRNEVRYADKVLLSDEESAHQWIV 60
          MGG  RQKK+HSSFSIF   FKSKR  KGD Y+H  +  +V  + KV  SDE+  ++W+ 
Sbjct: 1  MGGSHRQKKTHSSFSIFS-FFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVA 60

Query: 61 ELGLDRKAKDYIDRFYENRVVETERQTVTILP 91
          E G+DRKAKDYIDR Y+NRV ETERQTVTI P
Sbjct: 61 EPGIDRKAKDYIDRIYKNRVFETERQTVTIHP 91

[Close]

BLAST of Lcy12g004100 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 3.4e-09
Identity = 37/89 (41.57%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 1  MGGRQKKSHSS--FSIFGRLFKSKRNGKGDHYDHDGSRNEVRYADKVLLSDEESAHQWIV 60
          MGG+  +SHSS  FS+F   FK++R+ +    + DGS ++  Y  K + SDE+  + W+ 
Sbjct: 1  MGGK-NRSHSSKRFSLFS-FFKTRRSHR---VEADGSWDDFGYTRKAMASDEDKRY-WVA 60

Query: 61 ELGLDRKAKDYIDRFYENRVVETERQTVT 88
          E G+DRKA  +I +F+  RV E+ERQT++
Sbjct: 61 EPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of Lcy12g004100 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.0e-05
Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 23 RNGKGDHYDHDGSRNEVRYADKVLLSDEESAHQWIVELGLDRKAKDYIDRFYENRVVETE 82
          R       + D S ++V Y  K   SDE+  + W+ E G+DRKA  +I +F+ +RV E+E
Sbjct: 4  RRSSHHRVEADASWDDVIYTRKAWASDEDKRY-WVAEPGIDRKASAFIAKFHASRVSESE 63

Query: 83 RQTV 87
          RQT+
Sbjct: 64 RQTL 66

The following BLAST results are available for this feature:

BLAST of Lcy12g004100 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g004100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7Y2	7.1e-23	63.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1	2.1e-22	61.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A5A7SWT9	7.3e-20	59.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KAK6	9.5e-20	62.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]
A0A0A0K8W0	1.2e-19	61.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1	[more]

BLAST of Lcy12g004100 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45870.1	1.5e-22	63.92	hypothetical protein Csa_004960 [Cucumis sativus]	[more]
KAG6588556.1	8.8e-20	57.29	hypothetical protein SDJN03_17121, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0035003.1	1.5e-19	59.00	hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343...	[more]
KGN45869.1	2.0e-19	62.37	hypothetical protein Csa_005516 [Cucumis sativus]	[more]
KGN45873.1	2.6e-19	61.96	hypothetical protein Csa_005148 [Cucumis sativus]	[more]

BLAST of Lcy12g004100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	3.4e-09	41.57	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	1.0e-05	39.06	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..87
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g004100.1	Lcy12g004100.1	mRNA