Lcy12g003640 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g003640
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	CCHC-type domain-containing protein
Location	Chr12: 11468580 .. 11479674 (+)
RNA-Seq Expression	Lcy12g003640
Synteny	Lcy12g003640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAGTAAGGGCAACAACCAGGTTTGCGTGAGGGAGGAAGCGGGCGACCAACAGGGCATCGCCGACAGGGGGATACCTTCAATGGAGAAGGATATCGGAACAGAGGAAATGAATAGGCTTGTCCAGAAGCTAAAATTGGAGGAGGACAGAAGGCTAGTGGAAGTCGAGGATGATGATATAGAAGACACCGACAGAGACTTCAAAAACGCCATTGCTTGTAAAATCCTCACAACAGACACAATTAATTCGAAAGTCTTCTTAGATATAATGCCAAGGATCTGGGGGATCGAAGGGGCGGTGAAAGTGGAACGAGCTGGCACAAACGTTTTCTTATGCAAATTCAGGAGAACAAAAGACAAAATAAGAATAACCAAAGGGGGACCATGGATATACGATGATGCCATTCTGATTTTCGACGAGCCAAAGGGAAACTATAGTGTGGAGGCACTTGATTTCAAGTTTGTAGCTTTTTGGATCCACTTTTATAACTTACCACGAGTTTGCTTTTGCAGGAAATACGTCATGGCCCTTGCAAACTCAATTGGAACCTTTGAAGCTGTGGAGTCGGATGAAAACGGGAAAATGAAGGGAGATACACTAAGGGTTAAAGTCGGTATAAATGTCGAAGAGCCACTCAAGAGGGGAACCAACGTTAAAACTGGATCGATAGTAGGGAAAACATGGATACCAATAACCTACGAGAAACTCCCAGATTTCTGTTATCATTGCGGGAAACTTGGCCATGTCATTCACGAGTGCACCAAGGAGGAAGACGAATCAAGAAGAGAGAAAATATATGGAACTGACCTGCGAGAGACAAAAGGAAGTAAATGGATATACAAGAACTGGAGAAACGCAACAAATGAGATGAGAATCAGAGGAAGAGGCCGTGGACGATTTGGAAGACAATCGAGAGGTAGTTTCAAGAATAATCGACGCAGCTTCGAAGAATCAGGTGAATCAGCGGGGAAATGGTGGAAATGAGAAATGAACTCTTCCCCAAAAATGGAATGAATTTGACTTGAACGGCTCTTCCCTTTTATAGAATGAGGACATGCTTGAATTAGGTTGACCTAGACACGTGGATGGCTCTCCTTGCTCCTCAAATCCGAGAATAGCTTAACTAACTTTAGTTCATTAAAATGGATAACGAGCTGTGACGTGGCAGTTTTGCTCCCGCTTTGCTGGATCGCAGATTTTGCTCCCTTAAGTCGCTCAACAATATATTCTACACAAAATAACTTCCAAAGCATTCATTCTTCCAAATGGGTTAGAACATGCAATAATCATCTAATAGCAACCCTAATAAGTACAAATGACACACAAAACACTATAGAAGTAAGGCCTAAATAACTCCATCTTGGAGAGTTATCACACCCCCAAACTTAAACTATTGTGCGTTCCGAGCAATACTAACCAACCTTCTCTTAAGAACTCAAAACATCAGACAAAGCATAACTTAATCAAAACAGATAATCCAACACTACCTTCACCCTTTACCTGAGCATTCTGCAAAACCAAGTACTGCTGCAGCAAGATAATTCTTCCGGCATGGACAAATAATCACCACCTTTAACTTAATCCTAAGAACTTGCCACAACCTAGCTCTATCATCAGACATATTAAAACACATTTTTAAGGGGTTTATATTTTTGCTTTTTAGACTTAAAGCAACCCTACAGTCATAAGCTCTTAAGCATGGGATGACCCACTTTATGGTGCAGTATACCCTTGCCTCAAACTTATCACCAACTAGGCTAAATACTCATTGCAAAGCTAAAAAACCCTTAGTTATTCTATCCCTTGCTCCTCAGAATGACGACATTTTATGATGAAGCTCACCTAAGTCCTGGGAAACAGAAAACTACTGGATTACCATTCATCCTTCTAAACTTTTGCTCTGTGAATTTTCTCAGCAAAATGTTCAACAATCGTTTTTTTCATCAAATAATAATTTTTTTCATCATTTTTCACATTTCCTAGGTTATCTTTTGACGCAAAGACAAATTGTGGGTATCACAAATGTCTCTGGTTACTCAATAACCTAGCAAATTATTTAATGAAGGAGATGAATGCTCGAGCAAAACAATTGGAGTAGCAAAAAGTCCCCCAAACATGAATTATTCATTGTCCCCAATGAATTTTTTAATCGATAAATTATACCCCCAAACTTAATTTTTTCTATTTGAATTTTTAAGCTAAGCGTGGGACTAGAAGTAAGCTTAAAATGGATCACATAAGTCAACACTACCTCAGAATCTTCTCGCCGCAGCAACGACCAGGCTAGAAGAAATGCTCAAGCAAAAGGTTTCTGGAGATCAAAATACCTTGATCTAATTAAGCTTAACTAGCCCGTGCTTCAAAAGTTCAGAAGAAAATTAGTTAGGTTAGAATTACTCAGCTTCATAGAACATAAATACTATTGGAAATTCATTAAAAAGAAAGAAATTACATTCGCAGATATATTTTTTTCTTCGATGATCCAGCAGCAGAAAAATTAAAAACAAGCAGCACAACAAAACAAGCAAAAACAGAAAAAGATGTGGTCAGAAATGCGCGAGCAACAAAAATATTTCATCAAAATAACTGTGCGCTCAAATTTCCTTTTTCAATCCTCCTGACCAGGATCTTGTTCTTCATCTCCTTCTCTCTTGACAGGCGGCGGTGGGATCCATGGATTCAACAGGTCATCAGGGAATATCGGGAAGGCCGGATATGGTTTTGAAAAATTAGATTGTAGGGCCCCCCTTAGTGCGACATCCCTTTTCTTCACATAATTCCAGAAGGTTTGGAATTGCCTTTCAGCAAACTCCATCTTGCTGGACTGCAGCTGTAATTGCTCCTGCATTTGATGGATGTCGCACCCCAAACCTCCTTGGCGTGCTTCCTATGTAATTTGAAGCCTGGCCAAATTTGGTGTGTCGATTATTCCCTTGTCCATTAGAGTCACATCATCAACATTCATTGGAACCCCTGCCCTTTGGCATAACATCGTTATGGTGTTAGGGAAAAACAACTTCCCTACTTTCTTCTGCTAGCAGGCATATATTTCATTAGAAATTATTTTGCCCACATCAATACTCATCGAACGAAGAATAGAAAAAACAAGCAATACCCGGTCCCGAGACACCGTTGAATCGTGAGTTGTCGGCAGTAAGCGTAGCTTGATGAAGCCCATCCATGTATTGGATTCGCTTTTCAAATAGGCAGCTTGAAATGTACGCTTTTCTGTCTTCGACAGTCTCCACTGAGCCCCCTCGATGCCAACTTCCCGGACAGCCGCATTTAACTGATCATTCGATGGTGCCACCACCATCTCATTGAAACCTGCGCGCGGAAAGTCTTGGAGATCAAACAAAGAGTTGATAGCACCTGGGCTCCAGTCAAAAGGTACCCCTCGGACGATAGCCTGAAATCCCTCTTGATCATCAATAATTGCATAAAATTCTCCGACAATATTCGAATTGACCGGCTTTGGCTTTGCACAGAACTGACTCCAACCATGGTTCGCTATTCTAGTCCTCAAGAACCGTGGCAGATCATCGCCAAACCCACGCTCAAACAGAAAGTCCTTTTCAGCATTTCTATGTATTTTGCCCGAGCAAGATTATTGACGAAGCGGTTGTACGACAACCGTGGCTCCTCAGCATCAAGATTCTCAGCCTCAGCCGATGCTTCAGCAATACCTTTGCTCTTGTCTTCCCTCTGTTTGGGCAAAATTTCCTCCTCCATTTTCTTTTCTGTTTCTTCCCACGCTTTATCTTTTGCCTCTTTTTTCTCCTGTTCTTCTCTCTCTGTATTCTCTTTCTCAGAATCAGTTGTCGGAGGTGAAGGAGTATCAGTCTGGACCACCTTGACTCGACCAACTTTTTGCTTCCAACGACGACGACGGGGTACTTCCGGCATAATAACCTCAACTCGAGCCTCTTGCTCATTGCCTTTTTCCCTGCACCTCTTCTGTCTGTCCCTCTTGCGCATCCTCTGTCTGTTTTTCTTGAACTTCTTGCGTATCTTCGACTATCGGTTCAGTCTATCCAGGGTTTTGTTCGTTAGGTTCCTTCGGATTTTCTTCCTCAACTACTTCGGCAACAATATCTTCCACTACCCTCTGCACTACTTCTTCGATTTCAGCCCTCTGTTGTCTTTTTCTTCTTTTAGCTTCCTTTTCCTCCGGCGTTTTCTTTTTCTTTGCTTTCATCTTTTGTACCTCAGGGGTAACTGGTATCTCTTCTTCCTCATTGTCTCTTTCCTTTCTTCCTCTCGTTTTCGCCATTTGAGACTCAAAGGTTTTTACAGTAAACCAAGGTAAAAGGACAAACAAAAACGGCAAGGGATGGAAGCAAGAAGATGAAGTGAATAAAAACTTACCGAAGGCTGTGAATAAATAGGGTTCCAGCAAATGAAATCCCAATCGAAAGAATTTTGCCCTTCATTAAATAAAATTACCGTTCAAATCTCATGCAATCTGAAAATTAAATCCATCAAACGGTAAAATCTGAAGTTCAAACGGCCCACGGTAAATGCTGGTGTGCTGTCCAACGGTTAAACCCTTGGATTTCCCCTGCGCGACACGTGGCTGCATCAAACTCTTCTTGCAATTTACCTGCCCATAGGAAATTCAAATCCAAACGGTAAAAATAATTAATCCACAACGAAAACCCTTTCTATTCGTACGAAATATTTGATTTGGCCATAAAATTGCCGCAACAACCTTCTGAGCAAAATCCTCATAGCTGTCCTCTGACTTCTGAAATGGCCTCCATACGGCGAAGAGTGACATTGCTCCAGGATTTCTTTTGCTTCATCACCTGAAACACACCTACGAATAATACAATCAGAACATTGCTTATACATAAATGGCTCATCCCAATAGAAAAATTTCGCATCATGCTTAAATTTTTTCATCTGCCTCCAATCCATATCAATAGGAGTGACTCCTTTTACCAAAAAGTTGACAATATTAGCATACCAAGGAATATCCTTGACTACCTTTACCTCGACAGCCAAGAGCTGTTCATATGGAAAAGAATCTGAAATGGCAGATTGCTTCAGAAAAGATGATGTTGGATCAAGACGAGATAAATGATCCGCAATGACATTTTCTGATCCCTTCTTGTCCTTTATCTCCAAGCCAAACTCCTGCAATAACAAAACCCAACGAATTAGTCTAGGCTTTGAATCTTTTTTAGACATTAAGTACCTTATTGCTGCATGATCCGTGAAAACTGTGACTTTGGATCCAACCAAATATGGGCGAAACTTCTCAAAGGCAAACACAACTGCCAACAACTCCTTTTCAGTAGTTGTGTAGTTGACTTGTGCCTCATTTAAAACCATGCTTGCATAATATATATGATGGATAAATTTGCCCTGCTTTTTCCCCAGCATGGCACCTACTGCAACATCACTCGCATCACACATTACCTTAAATGGCAAACTCCAATTAAGTGCACACAGAATGGGTGCTGAGATTAAAGCAACCTTTAAAGTTTCAAAAGCCTTCCTACAATTTGCATTAAAGTCAAAAACATGATCAGTACACAATAAGTTACAAAGAGGTTTACTAATCTTTGAGAAATCCTTTATGAACCTTCTATAAAATCCAGCATGACCCAAAAAACTCCGAATCCCTTTCACTGTACTCGGTGGTTCTAATCTTTCAATAACCTCAATTTTTGCTCGATCAACTTTTAGACCTTTCTTTGAAATTTTATGACCTAACACAATGCCCTCCTTCACCATGAAGTGACATTTCTCCCAATTAAGAACTAGATGGGTATCCTCACATCTCTTTAACACCTTACCTAAATTATCCAAACAACTCTGAAAAGACCCTCCAAAGACTGAAAAATCGTCCATAAATACCTCAACAGTGGACTCAATCATATCAGAAAAAATTGCTAACATACACCTCTGTAATGTTGTTGGAGCATTGCAAAGGCCAAAAGGCATTCGCCTAAAAGCAAACGTCCCATAAGGGCAGGTGAAAGTGGTTTTTTCCTGATCCTCAGGAGCAATGGTAATCTAGTTATACCCATAATAACCATCTAAGAAACAGTAGTAGGCCTGACCATCCAATCTATCCAACATTTGGTCTATAAATGGTAGAGGAAAATGGTCCTTACGGGTGGCTTTGTTAAGCCTCTTGTAATCCATACAAACCCTCCAGCCAGTTACTGTCCAGGTTGGGATCAACTCATTATCTTTATTAGTTACCACTGTGACACCTCCTTTCTTAGGAACACATTGGACAGGGCTCACCCAATTGCTATCTGCAATTGGATAAATGATCCCAGCATCCAACCATTTAAACACCTCCTTTTTAACAACCTCTTTCATTACAGGGTTAAGCCTTCTTTGTAGCTCAATACTCCTAAAGGATCCCTCCTCTAGAGTGATTTTATGCATACAGAAAGAAGGGCTAATTCCCTGAATGTCAACCAATGTCCAACCTATTGCCTTGCGATATTGCTGCAACAATTTTATTAAGGCCTTTTCATCCCCCGACATTAAATCTGATGCAACAATAATGGGCAACGTCTCACCTTCTCCAAGATACACATACTTTAGATTATCCAGCAAGGGCTTCAAATCTAAAGTGGGTGCCTCAATCAGGGATGGATTAATAGGAGGAGCTTTCCTTTCATCCAAATCTAAAGACTCAAAAACATCCTCACACCTAAACACTTCTTTTTCATTTTTTCTTTCTAAAGAACAAATTTCTAAATCCTCTATACTAACCTCTCCATGACCTTCCAAATGCTTGTCAGCCGAATCCTGCATTGCTGTCTCAACAATTGTGTTCTCCAGAATCCTAATGAAAGAACAATCCTCCATTTCGTCTGGATACTTCATGGCCTTAAAAACATTAAACTTTACTTCCTCATTATAAACCCTCATTGTTAATTCCCCTTTTTGAACATCTATCTATGCTTTACCAGTAGCCAAAAATGGACGACCAAGAATAATTGGGACATATTTATCTGCCTCATAATCCAAAATAATAAAATCAACAGAAAATATGAACTTATCTACCTTTACTAAGACATCCTCAATTTTACCCTCAGGATAAGTGATAGACCTATCAACTAGTTGGAGTGTGACTGTGGTAGGCCTAGTTTCACCAATACCTAACTTTCGATAGACCAAAAGAGGCATAAGGTTAATGCTTGCACCTAAATCACAAAGTGCTCTACCTAACTCTTTTCCACCTATTGACACAGGAATAGTAAATGATCCTGGATCCTTAGCTTTGGTTGGTAGCCCATTCTTAAGAATAGCACTACATTCCTTAGTAAGAGATACAGTTTCAAACTCACCTAACCTCTTCTTTTTAGTTAAAATATCCTTAAGAAATTTAGCATAATTAGGCATTTGCTCAATAGCTTCTACTAAAGGGATATTTATATGCAATTGCTTAAGAATCTCTAAAAACTTCTTAAATTGACCATCCTGATTCTTAGGCCTTTGCCTTTGTGGAAAAGGTAGAGGTGGTACATAAGGTGGGAGCGGCACATAAGGTGGTTCCACATCTGGAACAGAACCAGATGCTCCAGCATTATTATTGCTACATCCAGCACCATGACCAGATTCCAACTCTTTCTCAATAACAACATTTTTATCACAATTTTTCTTTATATCCTGAGGTTTACTAGGCTCTTTTCTCTCTTCTAGTGGCTTACCACTCCTTAGAGTCATTGCCTTTACCTGCTCCTTACCTTCCCTTTTAGGGTGCTCAATATCTGAAGGAAGTTTCGCTTGAGGCCTTTCCTTCAGCTCATTAGCTAGCTGGCCCATTTGCAATTCTAGGGCTCTCATTGAAGCTTGATTACTTTGAATTGCGGCATCTGTACGAGCCATATATTCTTTCATCATTGCCTCAAGAGAACTCTCTGAATTTTGCTGGGGCAAAGCCTGCTTATTTTGCTGAGGCAATACCTGCGCTTTAGCAAATCCTGACTGGTTCACTTTTTGCTGTGCTTGCACATTACTTCCTTGTCCTCCCCATGCGAAGTTGGGGTGGTTGCGCCAACCTGGATTATAAAAGTTAGAGTAAGGGTTATTCCTTTGATTACCTACAAAAAACACAGAAGCTGGATTGCTGGGGCAAAACTCGTAGTTGTGCTCTTCACCACAATAGACACAAGCTTCCTCTGCAACTTGGTTCACTACTACAGCAGGCTCCACAGTTGGCGGCTGCTGATGACTAACCACTGTCACATTTTTAAGAGCGTTAGCTAACATTGCAATATCAACCCTAATGGTAGACACACCATCAACCTCTAACACACTCTTAACCTTTTTATTTGTGCCTCTAACATCTGACCACTGACAACTATTAGTTGATATTCTTTCTAAAATTTCATGGGCTTCATTAAAAGTTTTTGCCAACAGGGTCCCTCCAGCTGAAGCATCAGCCATACCTTGGGTTGCTCCATTTAACCCATTGTAAAATGTTTCCATTTGGATAGAATGAGGTAAACCCTGGTGGGGACACTTTCGCAAAAGCTCCTTAAACCTCTCCCAAGCCTCACTAAAAGTCTCATCCTCAAGTTGCCTAAACCCTACCATTTCACTCCTCAATTTAGCATTCCTGTTTGGTGGAAAATATTTACTAAGGAATTTTTCCGCTAACTCATTCCATGTCCTAATTGATCTTGGAGAAAAAGAATTTAACCATGCCTTTGCTCCATCTCTAAGATAATACGGGAACAAAGTTAATCTAAGGGCATCTCTAGACACTCCCTGAATTACAAATGAATCACTAACTCCTAGAAAAGACTTAAGATGTAAATGAGGGTCTTCAGATGACAAACCATGGAATTGACCCACGGTTTGCAACATCTGAAACATTGCTGGTTTCATTTCAAAATTTGCTGCCTCAATTTGAGGACGTGCAATCCCTGGATTTAACTCATCAAACATTGGAAAAGCATACGCTCGAATGGCTCTTGCCCTATCGTTTGCTACCAAGATAGGATTCTCAGCCTGATTATTTTGTTGTTCATTTTGCTTCAGCGGTGGATTTTGCTGCAGCACACGATTCTGTTGGGGGTTCACTGAACCCTGCGGGAGACGTGGCACGTCAGCCATTGGATTTTGGTTTCTACGCTGCTCTCTCCTTCTTCTTCTGAATGTCCTCTCGATTTCTGGATCAAGCTCGAACCTTACCCCAGGCGGATCGCTCATGCACCAAACTCACACCTGCAAAAACAAAAGAAACAATAAAAAAGTTCTAGCACCAAACCACTAAAACACATACACAAAATAGATTAGATAAAAACTTATTCAACTCCCCGGCAACGGCGCCAAAAACTTGTTGGGTTCCCAGAGTGAGTAAAAATAAGGTGAAATTAAACTCTAGAACACCTGTGCAAGCATACACAATCCGCGTCAAGTAATAAGTATTTATCGAATTCAATGTCTTAATTAGCTCTCACTTTATCTATTTTGTGCAACTCTTTAATGGTTTCGAAAGTAGTAAAAATGATTGGTTTTTATAGAATGCTGAAGCAAAAGAAATGACAGAACAGAAAGTAAACAAATAAAGCAAACATATTAGAAACAGTCGTTGGTCAGGATTTAGTAATTGTTTTAAAAGATGCTCTAGCAATATTATTGATCAGGCAAAACTCTTGTAGTCTTATTAGTAGGATCCTCCCGGAACTCTGGATTTTTTAGAATGTGTTTCAACTCCAATGACGCACTACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAATCACTGGCGTTCACCAATACACAATGATCTAGTGTGATTAAATGCCACACACTCCCCAAATCATCCCTGAAATTAGGAAGTGATATTCAAACCGGCTGGCCAAGCGGGCACAAAATATAAATAAGCACAACAATTAATCAAGATGCATCAAATCAACATTTATTGCATAGAGAATAAGCACGACAATTACATGACTCCTAACCAACACCTAAAGTAACTTAGTTCATAAAGTGCATAACAACACATGTTACAATCTGAGTAAGTGCATCCATAATTACAAAGTATTATAAGAAAATAAAAATTCCCTTAGTACATTTCGCAATTGATGGTCTTCTTGAGGTCTCCAATCTTTCTTCTCTATTCGGCTCCCAATGATGGAAATAAAATGATCTCTTCCCCAAAAATGGAATGAATTTGACTTGAACGACTCTTCCCTTTTATAGAATGAAGACACGCTTGAATTAGGTTGACCTAGACACGTGGATGGCTCTCATTGCTCCTCAAATTCGAGAATAGCTTAACTAACTTCAGTTCATTAAAATGGATAACGAGCTGTGATGAGGCAGTTTTGCTCCCTGCTTTGCTGGATCGCAGATTTTGCTCCCTCAAGTCGCTCAACAATATATTCTGCACAAAATAACTTCCAAAGCATCCATTCTTCCAAATGGGTTAGAACATGCAATAATCATCTAAAAGCAACCCTAATTAGCACAAATGACACACAAAACACTATAGAATTAAGGCCTAAATAACTCCCTATTGGAGAGTTATCAAGAAGCTTAGCAGATGGAATAAGTCCCGCCTGAAAGGTTCCATATCCGCGACCATAGCTTCCAAGGAGATGGATATCAAAAATTTGATCAACCTGCAGGGAAGGGCCAACAACATTAAGCTAATAAAAGCTGAAAAAGACCTTGAGGCTCGTTTGCTTGAAGAAGAGATGTATTGGAAGCTTCGCTCGAGAGAAGACTGGGTCAAGTGGGGTGACCGTAACACCAAGTGGTTCCACTCCAAAGCAAATTACAGACGAAAAATGAACAAGCTCGAAGGTATCTTTGATTCCAATGGGAATTGGGTCGAAGGGGAGGAAAACATAGGGATTGTCGCTTCTGGTTATTTCTCCTCTTTGTTCCAAACCTCCAATCCTAGTCAAAGAGAGATCGACATCATCCTAGAAGGTATCACCTCTAAAATCTCGGATGAGCAAAGTAGGAGTTTGGATAGACCTTTCTCGAAGTCCGAGGTTGAGATGGCTATTAAGAACATGAATCCTAGTAAGGCTCCAGGTCCTGATGGAGCTCATGCTAGGTTTTTTTTTCAGAAATACTGGGATACAGTAGGCTAG

mRNA sequence

ATGGACAGTAAGGGCAACAACCAGGTTTGCGTGAGGGAGGAAGCGGGCGACCAACAGGGCATCGCCGACAGGGGGATACCTTCAATGGAGAAGGATATCGGAACAGAGGAAATGAATAGGCTTGTCCAGAAGCTAAAATTGGAGGAGGACAGAAGGCTAGTGGAAGTCGAGGATGATGATATAGAAGACACCGACAGAGACTTCAAAAACGCCATTGCTTGTAAAATCCTCACAACAGACACAATTAATTCGAAAGTCTTCTTAGATATAATGCCAAGGATCTGGGGGATCGAAGGGGCGGTGAAAGTGGAACGAGCTGGCACAAACGTTTTCTTATGCAAATTCAGGAGAACAAAAGACAAAATAAGAATAACCAAAGGGGGACCATGGATATACGATGATGCCATTCTGATTTTCGACGAGCCAAAGGGAAACTATAGTGTGGAGGCACTTGATTTCAAGTTTGTAGCTTTTTGGATCCACTTTTATAACTTACCACGAGTTTGCTTTTGCAGGAAATACGTCATGGCCCTTGCAAACTCAATTGGAACCTTTGAAGCTGTGGAGTCGGATGAAAACGGGAAAATGAAGGGAGATACACTAAGGGTTAAAGTCGGTATAAATGTCGAAGAGCCACTCAAGAGGGGAACCAACGTTAAAACTGGATCGATAGTAGGGAAAACATGGATACCAATAACCTACGAGAAACTCCCAGATTTCTGTTATCATTGCGGGAAACTTGGCCATGTCATTCACGAGTGCACCAAGGAGGAAGACGAATCAAGAAGAGAGAAAATATATGGAACTGACCTGCGAGAGACAAAAGGAAGTAAATGGATATACAAGAACTGGAGAAACGCAACAAATGAGATGAGAATCAGAGGAAGAGGCCGTGGACGATTTGGAAGACAATCGAGAGGTTCCATATCCGCGACCATAGCTTCCAAGGAGATGGATATCAAAAATTTGATCAACCTGCAGGGAAGGGCCAACAACATTAAGCTAATAAAAGCTGAAAAAGACCTTGAGGCTCGTTTGCTTGAAGAAGAGATGTATTGGAAGCTTCGCTCGAGAGAAGACTGGGTCAAGTGGGGTGACCGTAACACCAAGTGGTTCCACTCCAAAGCAAATTACAGACGAAAAATGAACAAGCTCGAAGGTATCTTTGATTCCAATGGGAATTGGGTCGAAGGGGAGGAAAACATAGGGATTGTCGCTTCTGGTTATTTCTCCTCTTTGTTCCAAACCTCCAATCCTAGTCAAAGAGAGATCGACATCATCCTAGAAGGTATCACCTCTAAAATCTCGGATGAGCAAAGTAGGAGTTTGGATAGACCTTTCTCGAAGTCCGAGGTTGAGATGGCTATTAAGAACATGAATCCTAGTAAGGCTCCAGGTCCTGATGGAGCTCATGCTAGGTTTTTTTTTCAGAAATACTGGGATACAGTAGGCTAG

Coding sequence (CDS)

ATGGACAGTAAGGGCAACAACCAGGTTTGCGTGAGGGAGGAAGCGGGCGACCAACAGGGCATCGCCGACAGGGGGATACCTTCAATGGAGAAGGATATCGGAACAGAGGAAATGAATAGGCTTGTCCAGAAGCTAAAATTGGAGGAGGACAGAAGGCTAGTGGAAGTCGAGGATGATGATATAGAAGACACCGACAGAGACTTCAAAAACGCCATTGCTTGTAAAATCCTCACAACAGACACAATTAATTCGAAAGTCTTCTTAGATATAATGCCAAGGATCTGGGGGATCGAAGGGGCGGTGAAAGTGGAACGAGCTGGCACAAACGTTTTCTTATGCAAATTCAGGAGAACAAAAGACAAAATAAGAATAACCAAAGGGGGACCATGGATATACGATGATGCCATTCTGATTTTCGACGAGCCAAAGGGAAACTATAGTGTGGAGGCACTTGATTTCAAGTTTGTAGCTTTTTGGATCCACTTTTATAACTTACCACGAGTTTGCTTTTGCAGGAAATACGTCATGGCCCTTGCAAACTCAATTGGAACCTTTGAAGCTGTGGAGTCGGATGAAAACGGGAAAATGAAGGGAGATACACTAAGGGTTAAAGTCGGTATAAATGTCGAAGAGCCACTCAAGAGGGGAACCAACGTTAAAACTGGATCGATAGTAGGGAAAACATGGATACCAATAACCTACGAGAAACTCCCAGATTTCTGTTATCATTGCGGGAAACTTGGCCATGTCATTCACGAGTGCACCAAGGAGGAAGACGAATCAAGAAGAGAGAAAATATATGGAACTGACCTGCGAGAGACAAAAGGAAGTAAATGGATATACAAGAACTGGAGAAACGCAACAAATGAGATGAGAATCAGAGGAAGAGGCCGTGGACGATTTGGAAGACAATCGAGAGGTTCCATATCCGCGACCATAGCTTCCAAGGAGATGGATATCAAAAATTTGATCAACCTGCAGGGAAGGGCCAACAACATTAAGCTAATAAAAGCTGAAAAAGACCTTGAGGCTCGTTTGCTTGAAGAAGAGATGTATTGGAAGCTTCGCTCGAGAGAAGACTGGGTCAAGTGGGGTGACCGTAACACCAAGTGGTTCCACTCCAAAGCAAATTACAGACGAAAAATGAACAAGCTCGAAGGTATCTTTGATTCCAATGGGAATTGGGTCGAAGGGGAGGAAAACATAGGGATTGTCGCTTCTGGTTATTTCTCCTCTTTGTTCCAAACCTCCAATCCTAGTCAAAGAGAGATCGACATCATCCTAGAAGGTATCACCTCTAAAATCTCGGATGAGCAAAGTAGGAGTTTGGATAGACCTTTCTCGAAGTCCGAGGTTGAGATGGCTATTAAGAACATGAATCCTAGTAAGGCTCCAGGTCCTGATGGAGCTCATGCTAGGTTTTTTTTTCAGAAATACTGGGATACAGTAGGCTAG

Protein sequence

MDSKGNNQVCVREEAGDQQGIADRGIPSMEKDIGTEEMNRLVQKLKLEEDRRLVEVEDDDIEDTDRDFKNAIACKILTTDTINSKVFLDIMPRIWGIEGAVKVERAGTNVFLCKFRRTKDKIRITKGGPWIYDDAILIFDEPKGNYSVEALDFKFVAFWIHFYNLPRVCFCRKYVMALANSIGTFEAVESDENGKMKGDTLRVKVGINVEEPLKRGTNVKTGSIVGKTWIPITYEKLPDFCYHCGKLGHVIHECTKEEDESRREKIYGTDLRETKGSKWIYKNWRNATNEMRIRGRGRGRFGRQSRGSISATIASKEMDIKNLINLQGRANNIKLIKAEKDLEARLLEEEMYWKLRSREDWVKWGDRNTKWFHSKANYRRKMNKLEGIFDSNGNWVEGEENIGIVASGYFSSLFQTSNPSQREIDIILEGITSKISDEQSRSLDRPFSKSEVEMAIKNMNPSKAPGPDGAHARFFFQKYWDTVG

Homology

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BLAST of Lcy12g003640 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 4.9e-05
Identity = 29/102 (28.43%), Postives = 53/102 (51.96%), Query Frame = 0


Query: 379 RRKMNKLEGIFDSNGNWVEGEENIGIVASGYFSSLFQTSNPSQREIDIILEGIT-SKISD 438
           +R+ N+++ I +  G+       I      Y+  L+     +  E+D  L+  T  +++ 
Sbjct: 384 KREKNQIDTIKNDKGDITTDPTEIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQ 443

Query: 439 EQSRSLDRPFSKSEVEMAIKNMNPSKAPGPDGAHARFFFQKY 480
           E+  SL+RP + SE+   I ++   K+PGPDG  A  F+Q+Y
Sbjct: 444 EEVESLNRPITGSEIVAIINSLPTKKSPGPDGFTAE-FYQRY 484

[Close]

BLAST of Lcy12g003640 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 8.6e-37
Identity = 91/268 (33.96%), Postives = 142/268 (52.99%), Query Frame = 0


Query: 44  KLKLEEDRRLVEVEDDDIEDTDRDFKNAIACKILTTDTINSKVFLDIMPRIWGIEGAVKV 103
           KL  EED   ++V+ D ++  ++    ++  K+L    I++ V   ++   W +E  + V
Sbjct: 14  KLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRVLLLAWKVEHQLTV 73

Query: 104 ERAGTNVFLCKFRRTKDKIRITKGGPWIYDDAILIFDEPKGNYSVEALDFKFVAFWIHFY 163
           E  G N+FL  F R  D  R+ K GPW +D A+++  +P  + ++  L+F  VAFWIH +
Sbjct: 74  ESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISELEFNRVAFWIHLF 133

Query: 164 NLPRVCFCRKYVMALANSIGTFEAVESDENGKMKGDTLRVKVGINVEEPLKRGTNVKTGS 223
           +LP     +   + L N+IG F  V+ +E G   G +LR++V I++ +PL+RG  +    
Sbjct: 134 DLPMSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDG 193

Query: 224 IVGKTWIPITYEKLPDFCYHCGKLGHVIHECTKE----EDESRREKIYGTDLRETKGSKW 283
            +G  WIPI YE+LPDFCY CG +GH  H+C       +D+SR    YG  LR   GSK 
Sbjct: 194 PMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATSEYGPWLRFV-GSKA 253

Query: 284 IYKNWRNATNEMRIRGRGRGRFGRQSRG 308
             +  R   +  R    G      + RG
Sbjct: 254 GAQKGRKGKSPAREDSCGSSSMNSKERG 280

[Close]

BLAST of Lcy12g003640 vs. ExPASy TrEMBL
Match: A0A2Z6NZM7 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_30450 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-36
Identity = 145/608 (23.85%), Postives = 230/608 (37.83%), Query Frame = 0


Query: 38  MNRLVQKLKLEEDRRLVEVEDDDIEDTDRDFKNAIACKILTTDTINSKVFLDIMPRIWGI 97
           M R   K  ++E+   + VE D++ + D  F   +  KI T    N + F   M + W  
Sbjct: 1   MERSSSKRPVDEEDEAIPVEVDEMCNDDESFSRTLVGKIWTESPYNIRAFKQTMTQAWRC 60

Query: 98  EGAVKVERAGTNVFLCKFRRTKDKIRITKGGPWIYDDAILIFDEPKGNYSVEALDFKFVA 157
              V ++    N+FL KF   K+   + K GPW +D  +LI +   G             
Sbjct: 61  RNPVDIQDLNKNLFLFKFATKKEAELVCKTGPWSFDIYLLILNRISG------------- 120

Query: 158 FWIHFYNLPRVCFCRKYVMALANSIGTFEAVESDENGKMKGDTLRVKVGINVEEPLKRGT 217
                               L N +G FE ++  +  +M G  LR++V +++ +PLKRG+
Sbjct: 121 ----------------MGKKLVNILGIFEEMDMKDCNRM-GKFLRIRVSMDLRKPLKRGS 180

Query: 218 NVKTGSIVGK-TWIPITYEKLPDFCYHCGKLGHVIHECTKEEDE--------SRREKIYG 277
            +   S  GK  W+   YE+LP+FC+ CG++GH + +C + ED           +++ +G
Sbjct: 181 KL---SFQGKDIWVDYKYERLPNFCFACGRIGHQMRDCEEVEDHDTDAYSELEEKDQAFG 240

Query: 278 TDLRETKGSKWIY------------KNWRNATNEMRIRGRGRGRFGR----QSRGSISAT 337
             LR +   K  Y            K+  ++TN  + +  G  +       Q + +    
Sbjct: 241 PCLRASPLPKVFYEVKKETSSGTCSKSLFSSTNNSKGQSSGTAKVNEEEVDQQKATSETA 300

Query: 338 IASKEMDIKNLINLQGRANNIKLIKAEKD------------------------------- 397
           I +K  D  +   ++G    +  ++ E +                               
Sbjct: 301 IPTKTNDKNHNEAMEGVVEKVGSVQKEVEGVAESLGAVTISIVPISVEDKQSSKARKKWV 360

Query: 398 -------------------------LEARLLE---------------------------- 457
                                    +EAR+ E                            
Sbjct: 361 RQKVSKPRNKQPAKLVEKKGGKRALVEARVTEGTLADVLRKEKKKKGDVEMEDYVVSSRL 420

Query: 458 ----------------------------------------------------EEMYWKLR 485
                                                               +E  W+ R
Sbjct: 421 VDIPSRGQMVERGMKIFSLGWTGRWEMKASSIVSHPSRFKALEKYHGDLLKRQETMWRQR 480

[Close]

BLAST of Lcy12g003640 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.9e-36
Identity = 79/213 (37.09%), Postives = 124/213 (58.22%), Query Frame = 0


Query: 44  KLKLEEDRRLVEVEDDDIEDTDRDFKNAIACKILTTDTINSKVFLDIMPRIWGIE-GAVK 103
           KL  EED+  V+++   +E T +  + ++ CK+L+  +I+  V  + +   W ++  A  
Sbjct: 14  KLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNTLKIAWKLDCKAFS 73

Query: 104 VERAGTNVFLCKFRRTKDKIRITKGGPWIYDDAILIFDEPKGNYSVEALDFKFVAFWIHF 163
           V+  G N+FL  F R+ D+ RI + GPW +D A++I D P        +DF+ V+ W+HF
Sbjct: 74  VDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPLDMDFRNVSLWVHF 133

Query: 164 YNLPRVCFCRKYVMALANSIGTFEAVESDENGKMKGDTLRVKVGINVEEPLKRGTNVKTG 223
           ++L   C  +     L N+IG FE VES+ N    G  LRV+V  +V +PL RG  +   
Sbjct: 134 FDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLD 193

Query: 224 SIVGKTWIPITYEKLPDFCYHCGKLGHVIHECT 256
             +G  WIPI YE+LPDF YHCG+L H++ +C+
Sbjct: 194 GPMGGCWIPIQYERLPDFRYHCGRLDHILKDCS 226

[Close]

BLAST of Lcy12g003640 vs. ExPASy TrEMBL
Match: A0A5C7IKP2 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_004107 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 9.5e-36
Identity = 92/309 (29.77%), Postives = 163/309 (52.75%), Query Frame = 0


Query: 33  IGTEEMNRLVQKLKLEEDRRLVEVEDDDIEDTDRDFKNAIACKILTTDTINSKVFLDIMP 92
           +GT E+ +L + L L +    +++E +  +    D    +  K+L+T  +N + F+ ++ 
Sbjct: 1   MGTRELVKLCESLSLADKEPFLQIEGEAEQVGINDVGLCLVGKVLSTKKVNREAFIGVIE 60

Query: 93  RIWGIEGAVKVERAGTNVFLCKFRRTKDKIRITKGGPWIYDDAILIFDEPKGNYSVEALD 152
           ++W   G V++E    N+F+  F   + +  I   GPW +D  +++ ++PKG   +  L 
Sbjct: 61  QLWNPFGRVEIEALADNIFVFYFNNPEVRESIWARGPWHFDQNLIVLEKPKGAGDISNLS 120

Query: 153 FKFVAFWIHFYNLPRVCFCRKYVMALANSIGTFEAVESDENGKMKGDTLRVKVGINVEEP 212
           F  V  W+  +NLP +C  R+   A+A  IGT   + + E+ + +G  LRVKV IN+  P
Sbjct: 121 FSMVEMWVQIHNLPLMCMNRRTAKAIAEQIGTVIEIPA-ESKECRGKFLRVKVQINISNP 180

Query: 213 LKRGTNVKTGSIVGKTWIPITYEKLPDFCYHCGKLGHVIHECTKEEDESRREKIYGTDLR 272
           LKR   +    I     +P+TYE+LP+FCY CG++GH + ECT  +D++R E + G+ + 
Sbjct: 181 LKRFIRLGVKEIEKAIIVPLTYERLPEFCYACGRIGHGLRECT--DDKARTEALEGSSI- 240

Query: 273 ETKGSKWIYK--NWRNATNEMRIRGRGRGRFGRQSRGSISATIASKEMDIKNLINLQGRA 332
             K   W+      R+ TN+ +  G    R G +++ S +   ++KE+        +  +
Sbjct: 241 --KFGSWMRAAVGERSRTNQQKHGGTNSSRSG-ENKSSFNYAESNKEVG-----GSKSTS 297

Query: 333 NNIKLIKAE 340
           N IKL   E
Sbjct: 301 NPIKLTDRE 297

[Close]

BLAST of Lcy12g003640 vs. ExPASy TrEMBL
Match: A0A5C7GUN1 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027725 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 8.1e-35
Identity = 80/227 (35.24%), Postives = 127/227 (55.95%), Query Frame = 0


Query: 72  IACKILTTDTINSKVFLDIMPRIWGIEGAVKVERAGTNVFLCKFRRTKDKIRITKGGPWI 131
           +A KIL+ ++IN + F  ++ RIW ++G V++E   TN++   F+   D+ R+  GGPW 
Sbjct: 29  LAGKILSRESINREAFRSLIARIWKVQGGVEIEVISTNIYAFPFQSFDDRKRVFMGGPWS 88

Query: 132 YDDAILIFDEPKGNYSVEALDFKFVAFWIHFYNLPRVCFCRKYVMALANSIGTFEAVESD 191
           +D A+++ +EP+G  ++ +L F  V FW+H  N+P +   +     L + IG    V+  
Sbjct: 89  FDGALIVLEEPEGKGAINSLLFNSVDFWVHITNVPMIYMTKDIGKFLGSIIGEVREVDVG 148

Query: 192 ENGKMKGDTLRVKVGINVEEPLKRGTNVKTGSIVGKTWIPITYEKLPDFCYHCGKLGHVI 251
            +    G  +RV+V + V++PL+R   V       +T +PI YE+LP FC+ CG +GH++
Sbjct: 149 PSSDCLGKFMRVRVAVEVDKPLRRFLRVDVLGDGEETVMPIQYERLPSFCFLCGLVGHLV 208

Query: 252 HECTKEEDESRREKIYGTD-LRETKGSKWIYKNWRNATNEMRIRGRG 298
           HECT           YG D LRE  GS  +Y  W  AT  +   GRG
Sbjct: 209 HECTS----------YGEDGLRE--GSGMVYGAWLRATAPLVQYGRG 243

[Close]

BLAST of Lcy12g003640 vs. NCBI nr
Match: XP_042962496.1 (uncharacterized protein LOC122296768 [Carya illinoinensis])

HSP 1 Score: 174.9 bits (442), Expect = 1.7e-39
Identity = 146/601 (24.29%), Postives = 254/601 (42.26%), Query Frame = 0


Query: 36  EEMNRLVQKLKLEEDRRL-VEVEDDDIEDTDRDFKNAIACKILTTDTINSKVFLDIMPRI 95
           E++ +  ++L+L  +  +   V  +  +  DR  ++ I  + +    +NS+ F   M ++
Sbjct: 4   EDLVKRWERLQLTTEESIPFHVNPEGSKKEDRMSEHCIVGRAMVERPVNSEAFRTTMSQV 63

Query: 96  WGIEGAVKVERAGTNVFLCKFRRTKDKIRITKGGPWIYDDAILIFDEPKGNYSVEALDFK 155
           W ++G ++    G   F+ +F++ +DK ++  G PW +D  +L   E     S+    F+
Sbjct: 64  WRLDGWIRFIEIGDQSFIIEFQKLEDKDKVLGGRPWFFDRCLLSLQEVDDTVSINKTQFR 123

Query: 156 FVAFWIHFYNLPRVCFCRKYVMALANSIGTFEAVESDENGKMKGDTLRVKVGINVEEPLK 215
           +  FW+  +NLP      +     A SIG    VE++ +G+  G  LRV+V +++ +PL 
Sbjct: 124 YEPFWVQLHNLPLATMNEEVGSQFAASIGHVIRVETESDGRGWGRCLRVRVAVDILKPLL 183

Query: 216 RGTNVKTGSIVGKTWIPITYEKLPDFCYHCGKLGH------------------------- 275
           RG  ++      + WI   YE+L +FC+HCG L H                         
Sbjct: 184 RGKWMRFEE--EEHWISFKYERLQNFCFHCGILNHKGKNCNKLRFENQDAEQAPLQFAKR 243

Query: 276 --------------------------VIHECTKEEDESR--------REKIYGTDLRET- 335
                                     ++H+  K+   SR        R+ +   DLR+  
Sbjct: 244 KTSWQLLEMLKPPPPMAWLCAGDFNEILHQGEKQGAGSRPYKQIEEFRKVVEVCDLRDIH 303

Query: 336 -KGSKWIYKNWRNATN-------------------------------------------- 395
            +G  + + N R   +                                            
Sbjct: 304 HQGHYFTWSNNRRGRHFTKERIDRALANKEWHELFSNASCTTLAAIQSDHSPLSILLQNS 363

Query: 396 ---------------------------EMRIRGRGRGRFGRQS-RGSISA---------- 455
                                      E   +G   G  G  + R  +SA          
Sbjct: 364 AKVYRHEARCFRYEVAWDLKEDCKKVVEYSWKGVSLGLEGANTVRQRLSACQRNLSQWSQ 423

Query: 456 ---TIASKEMD--IKNLINLQ--GRANNIKLIKA-EKDLEARLLEEEMYWKLRSREDWVK 485
              T+  K+++  ++ + +LQ  G  N+I  ++  +K +E  L  EEM W+ R+++ W+K
Sbjct: 424 TEKTMKHKDINQAVRRIRHLQEMGTGNHITEMQGLQKGVELALSTEEMKWRQRAKQHWMK 483

[Close]

BLAST of Lcy12g003640 vs. NCBI nr
Match: XP_042954551.1 (uncharacterized protein LOC122290956 [Carya illinoinensis])

HSP 1 Score: 165.2 bits (417), Expect = 1.4e-36
Identity = 141/540 (26.11%), Postives = 245/540 (45.37%), Query Frame = 0


Query: 36  EEMNRLVQKLKL-EEDRRLVEVEDDDIEDTDRDFKNAIACKILTTD-TINSKVFLDIMPR 95
           EE++ L + L+L EE+++ + +  +++    +DF N    +++ ++  +N   F   M R
Sbjct: 3   EELSYLCKGLRLTEEEQQEIFLPKEELL-IAQDFSNVCLAELVVSEREVNKGAFKATMTR 62

Query: 96  IWGIEGAVKVERAGTNVFLCKFRRTKDKIRITKGGPWIYDDAILIFDEPKGNYSVEALDF 155
           IW  EG +  +  G N FL +F     K ++  G PW +D +++   E KG  +++ + F
Sbjct: 63  IWNAEGGLSFKEYGRNKFLIEFHNLSVKNKVLVGRPWSFDRSLICLQECKGKQALKDIQF 122

Query: 156 KFVAFWIHFYNLPRVCFCRKYVMALANSIGTFEAVESDENGKMKGDTLRVKVGINVEEPL 215
           +   FWI  ++LP     R     L  S G    VE DE G+  G  LRVKV IN+ +PL
Sbjct: 123 ELEPFWIQLHDLPFAGLNRTMGEKLGGSAGKVLTVEVDEKGRAWGGVLRVKVLINISKPL 182

Query: 216 KRG-----------TNVKTGSIV-----------------------GKTWIPITYEKLPD 275
            RG           T  + GS +                       GK     + E+  D
Sbjct: 183 ARGRLALGESQPSTTQAQYGSWLRATALLKTSSHKPQAGSPVGRASGKGRYDSSEEQSAD 242

Query: 276 F-CYHCGKLGHVIHECTKEED---ESRREKIYGTDLRET-KGSKWIYKNWRNATNEMRIR 335
           F   +C +  + + E    +    E   E++ G    +T K ++ + ++ + A++   + 
Sbjct: 243 FGGNNCSRKSNDVRETVPIDPVLLEGDVEEVRGVGTSQTQKYNESLQRSEKEASHSFEVS 302

Query: 336 G------------------------------------------RG---RGRFGRQSRGSI 395
                                                      RG   R RF  +   +I
Sbjct: 303 DAAAITTIPPKDQTVYLAADINMANAVENLQGSLQTGTRVDVTRGSLERCRFQLREWSNI 362

Query: 396 SATIASKEMDIKNLINLQGRANNIKL----IKA-EKDLEARLLEEEMYWKLRSREDWVKW 455
           S     +E+  KN +    +A N  L    IK+ +K+L + L + ++ W+ R+++ W++ 
Sbjct: 363 SRKAHQQELTHKNELLRTLQATNTGLYNDQIKSLQKELNSSLEQTDLKWRQRAKQRWLQD 422

Query: 456 GDRNTKWFHSKANYRRKMNKLEGIFDSNGNWVEGEENIGIVASGYFSSLFQTSNPSQREI 485
           GDRNTK+FH  A+ R++ N L+ +    G  +   ++IG      F  LF +SNP+    
Sbjct: 423 GDRNTKYFHKCASARKQQNILQKLHTEEGQVLTSHKDIGSEFQAVFMDLFTSSNPNVS-- 482

[Close]

BLAST of Lcy12g003640 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 164.9 bits (416), Expect = 1.8e-36
Identity = 91/268 (33.96%), Postives = 142/268 (52.99%), Query Frame = 0


Query: 44  KLKLEEDRRLVEVEDDDIEDTDRDFKNAIACKILTTDTINSKVFLDIMPRIWGIEGAVKV 103
           KL  EED   ++V+ D ++  ++    ++  K+L    I++ V   ++   W +E  + V
Sbjct: 14  KLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRVLLLAWKVEHQLTV 73

Query: 104 ERAGTNVFLCKFRRTKDKIRITKGGPWIYDDAILIFDEPKGNYSVEALDFKFVAFWIHFY 163
           E  G N+FL  F R  D  R+ K GPW +D A+++  +P  + ++  L+F  VAFWIH +
Sbjct: 74  ESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISELEFNRVAFWIHLF 133

Query: 164 NLPRVCFCRKYVMALANSIGTFEAVESDENGKMKGDTLRVKVGINVEEPLKRGTNVKTGS 223
           +LP     +   + L N+IG F  V+ +E G   G +LR++V I++ +PL+RG  +    
Sbjct: 134 DLPMSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDG 193

Query: 224 IVGKTWIPITYEKLPDFCYHCGKLGHVIHECTKE----EDESRREKIYGTDLRETKGSKW 283
            +G  WIPI YE+LPDFCY CG +GH  H+C       +D+SR    YG  LR   GSK 
Sbjct: 194 PMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATSEYGPWLRFV-GSKA 253

Query: 284 IYKNWRNATNEMRIRGRGRGRFGRQSRG 308
             +  R   +  R    G      + RG
Sbjct: 254 GAQKGRKGKSPAREDSCGSSSMNSKERG 280

[Close]

BLAST of Lcy12g003640 vs. NCBI nr
Match: GAU35627.1 (hypothetical protein TSUD_30450 [Trifolium subterraneum])

HSP 1 Score: 164.1 bits (414), Expect = 3.0e-36
Identity = 145/608 (23.85%), Postives = 230/608 (37.83%), Query Frame = 0


Query: 38  MNRLVQKLKLEEDRRLVEVEDDDIEDTDRDFKNAIACKILTTDTINSKVFLDIMPRIWGI 97
           M R   K  ++E+   + VE D++ + D  F   +  KI T    N + F   M + W  
Sbjct: 1   MERSSSKRPVDEEDEAIPVEVDEMCNDDESFSRTLVGKIWTESPYNIRAFKQTMTQAWRC 60

Query: 98  EGAVKVERAGTNVFLCKFRRTKDKIRITKGGPWIYDDAILIFDEPKGNYSVEALDFKFVA 157
              V ++    N+FL KF   K+   + K GPW +D  +LI +   G             
Sbjct: 61  RNPVDIQDLNKNLFLFKFATKKEAELVCKTGPWSFDIYLLILNRISG------------- 120

Query: 158 FWIHFYNLPRVCFCRKYVMALANSIGTFEAVESDENGKMKGDTLRVKVGINVEEPLKRGT 217
                               L N +G FE ++  +  +M G  LR++V +++ +PLKRG+
Sbjct: 121 ----------------MGKKLVNILGIFEEMDMKDCNRM-GKFLRIRVSMDLRKPLKRGS 180

Query: 218 NVKTGSIVGK-TWIPITYEKLPDFCYHCGKLGHVIHECTKEEDE--------SRREKIYG 277
            +   S  GK  W+   YE+LP+FC+ CG++GH + +C + ED           +++ +G
Sbjct: 181 KL---SFQGKDIWVDYKYERLPNFCFACGRIGHQMRDCEEVEDHDTDAYSELEEKDQAFG 240

Query: 278 TDLRETKGSKWIY------------KNWRNATNEMRIRGRGRGRFGR----QSRGSISAT 337
             LR +   K  Y            K+  ++TN  + +  G  +       Q + +    
Sbjct: 241 PCLRASPLPKVFYEVKKETSSGTCSKSLFSSTNNSKGQSSGTAKVNEEEVDQQKATSETA 300

Query: 338 IASKEMDIKNLINLQGRANNIKLIKAEKD------------------------------- 397
           I +K  D  +   ++G    +  ++ E +                               
Sbjct: 301 IPTKTNDKNHNEAMEGVVEKVGSVQKEVEGVAESLGAVTISIVPISVEDKQSSKARKKWV 360

Query: 398 -------------------------LEARLLE---------------------------- 457
                                    +EAR+ E                            
Sbjct: 361 RQKVSKPRNKQPAKLVEKKGGKRALVEARVTEGTLADVLRKEKKKKGDVEMEDYVVSSRL 420

Query: 458 ----------------------------------------------------EEMYWKLR 485
                                                               +E  W+ R
Sbjct: 421 VDIPSRGQMVERGMKIFSLGWTGRWEMKASSIVSHPSRFKALEKYHGDLLKRQETMWRQR 480

[Close]

BLAST of Lcy12g003640 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 163.7 bits (413), Expect = 4.0e-36
Identity = 79/213 (37.09%), Postives = 124/213 (58.22%), Query Frame = 0


Query: 44  KLKLEEDRRLVEVEDDDIEDTDRDFKNAIACKILTTDTINSKVFLDIMPRIWGIE-GAVK 103
           KL  EED+  V+++   +E T +  + ++ CK+L+  +I+  V  + +   W ++  A  
Sbjct: 14  KLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNTLKIAWKLDCKAFS 73

Query: 104 VERAGTNVFLCKFRRTKDKIRITKGGPWIYDDAILIFDEPKGNYSVEALDFKFVAFWIHF 163
           V+  G N+FL  F R+ D+ RI + GPW +D A++I D P        +DF+ V+ W+HF
Sbjct: 74  VDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPLDMDFRNVSLWVHF 133

Query: 164 YNLPRVCFCRKYVMALANSIGTFEAVESDENGKMKGDTLRVKVGINVEEPLKRGTNVKTG 223
           ++L   C  +     L N+IG FE VES+ N    G  LRV+V  +V +PL RG  +   
Sbjct: 134 FDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLD 193

Query: 224 SIVGKTWIPITYEKLPDFCYHCGKLGHVIHECT 256
             +G  WIPI YE+LPDF YHCG+L H++ +C+
Sbjct: 194 GPMGGCWIPIQYERLPDFRYHCGRLDHILKDCS 226

[Close]

BLAST of Lcy12g003640 vs. TAIR 10
Match: AT5G36228.1 (nucleic acid binding;zinc ion binding )

HSP 1 Score: 64.3 bits (155), Expect = 3.1e-10
Identity = 43/181 (23.76%), Postives = 82/181 (45.30%), Query Frame = 0


Query: 75  KILTTDTINSKVFLDIMPRIWGIEGAVKVERAGTNVFLCKFRRTKDKIRITKGGPWIYDD 134
           +IL   T + +  +  +P  WG+   V         F  +FR   D +   +  PW++++
Sbjct: 42  RILNPQTQSVERAILELPYQWGLGTQVHGRILDDRCFQVRFRSEIDLLNGLRRAPWVFNE 101

Query: 135 AILIFDEPKGNYSVEALDF-KFVAFWIHFYNLPRVCFCRKYVMALANSIGTFEAVESDEN 194
             +     + ++  E  DF  F+  W+H   +P      + V  +A+++G   A++ +E 
Sbjct: 102 WFIALQRWE-DFPTE--DFLTFIDVWVHIRGIPLPYVSERTVEIIASTLGEVVAMDFNEE 161

Query: 195 GKMKGDTLRVKVGINVEEPLKRGTNVKTGSIVGKTWIPITYEKLPDFCYHCGKLGHVIHE 254
              +   +RVKV ++  EPL+    V+  S   +  I   YEKL   C +C ++ H +  
Sbjct: 162 TTSQITFIRVKVRMDFTEPLRFFRRVRFAS-RERAMIGFEYEKLQRVCTNCCRVNHQVSH 218

[Close]

BLAST of Lcy12g003640 vs. TAIR 10
Match: AT3G42140.1 (zinc ion binding;nucleic acid binding )

HSP 1 Score: 43.9 bits (102), Expect = 4.3e-04
Identity = 34/140 (24.29%), Postives = 53/140 (37.86%), Query Frame = 0


Query: 115 FRRTKDKIRITKGGPWIYDDAILIFDEPKGNYSVEALDFKFVAFWIHFYNLPRVCFCRKY 174
           F+  +    I + GPW ++D + +       +S    +FK + FWI    +P     R  
Sbjct: 66  FQSEESMFSILRRGPWSFNDWMCVIQRWTKLHS--DAEFKRIPFWIQIRGIP----LRFL 125

Query: 175 VMALANSIGTFEAVESDENGKMKGDTLRVKVGINVEEPLKRGTNVKTGSIVGKTWIPITY 234
              +  SIG                    ++G+ +E  L R  +V          +   Y
Sbjct: 126 TARIITSIGE-------------------RMGLFLETNLGRDVSV----------LKFQY 170

Query: 235 EKLPDFCYHCGKLGHVIHEC 255
           EKL +FC  CG L H   EC
Sbjct: 186 EKLKNFCTTCGMLSHDASEC 170

[Close]

BLAST of Lcy12g003640 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 5.6e-04
Identity = 31/133 (23.31%), Postives = 63/133 (47.37%), Query Frame = 0


Query: 350 EMYWKLRSREDWVKWGDRNTKWFHSKANYRRKMNKLEGIFDSNGNWVEGEENIGIVASGY 409
           E +++ +SR  W++ GD NT++FH      +  N ++ +   +   VE    +  +   Y
Sbjct: 432 ESFYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAY 491

Query: 410 FSSLFQTSNP--SQREIDIILEGITSKISDEQSRSLDRPFSKSEVEMAIKNMNPSKAPGP 469
           ++ L  + +   +   +  I +    + +D  +  L    S  E+  A+  M  +KAPGP
Sbjct: 492 YTHLLGSDSDILTPDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGP 551

Query: 470 DGAHARFFFQKYW 481
           D   A FF++ ++
Sbjct: 552 DSFTAEFFWESWF 564

The following BLAST results are available for this feature:

BLAST of Lcy12g003640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O00370	4.9e-05	28.43	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1	[more]

BLAST of Lcy12g003640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU55	8.6e-37	33.96	uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A2Z6NZM7	1.5e-36	23.85	Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_30450 PE=4 SV=...	[more]
A0A6J1BSZ1	1.9e-36	37.09	uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A5C7IKP2	9.5e-36	29.77	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00410...	[more]
A0A5C7GUN1	8.1e-35	35.24	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027725 PE=4 SV=1	[more]

BLAST of Lcy12g003640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_042962496.1	1.7e-39	24.29	uncharacterized protein LOC122296768 [Carya illinoinensis]	[more]
XP_042954551.1	1.4e-36	26.11	uncharacterized protein LOC122290956 [Carya illinoinensis]	[more]
XP_022156185.1	1.8e-36	33.96	uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha...	[more]
GAU35627.1	3.0e-36	23.85	hypothetical protein TSUD_30450 [Trifolium subterraneum]	[more]
XP_022132681.1	4.0e-36	37.09	uncharacterized protein LOC111005481 [Momordica charantia]	[more]

BLAST of Lcy12g003640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G36228.1	3.1e-10	23.76	nucleic acid binding;zinc ion binding	[more]
AT3G42140.1	4.3e-04	24.29	zinc ion binding;nucleic acid binding	[more]
AT1G43760.1	5.6e-04	23.31	DNAse I-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 208..255 e-value: 3.9E-10 score: 39.3
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 61..205 e-value: 4.3E-22 score: 78.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR33710	BNAC02G09200D PROTEIN	coord: 327..475
None	No IPR available	PANTHER	PTHR33710:SF24	SUBFAMILY NOT NAMED	coord: 327..475
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 241..256 score: 9.603271

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g003640.1	Lcy12g003640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding