Lcy12g003350 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g003350
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionCOP9 signalosome complex subunit 5b-like
LocationChr12: 10195498 .. 10198064 (-)
RNA-Seq ExpressionLcy12g003350
SyntenyLcy12g003350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATGCGCTTGATATCACTTATTTCAAGTCTTCACTTGACTGCCACCTCTTGGATTTGCTTTGGAACAAGTACTGGGTAAATACTCTTTCATCTTCTCCTTTCTTGGGTAATGGAGATTATGTTGGTGGTCAAATCTCAGATTTAGGTATCCTTCATTACAACGCACTCTTTTTACTACTCTGACTCAAATCATTTGGTGTGATCTGATTCTATTTAGTGGTTTATTTTGTGCTTTGCAGCTGAAAAACTTGAGCAGCTGGAAAATCAATTGGCTCACTCCCGGTTTGGGCCATTAATAGCTTCTTATTTATCTTATGCTTTCTTCTTTTATATATATACACGAGCACATGTTGTTCTCTCTTGTACATGTGAATGATCATCTGTTATTATCTAATTTGTACTGTAGAAAAACTATGGATCTTATAATAGATCCCAATTACCTATAGCCACTACCTAAGAAGCACGGATACGGACACGAGACACGGATACGACACGACACGAACACGGGGACACGTCATTTTTTTTAAAATCTAGGACACGGGGACACATCATTTTTATTGAAAGTTTGTGTACTGGTTTGTGTACTCTTGAACTCTAAAAATGGAGGTTGTTTATTTTGGAGGAATGCAAATAATTTTGATTGGGGGGGGGGGGTATTTTAGTTTTAGAGAAAGCCCAAATCAATTATTTGGACTGTTTAGTTATATTCTTGTGCATCATGCTAACAACATAGAGTTTGATCATCCTTGTGTACATGATGCTAACAACACAGAGTTTGATCATCCTTGTGTACATGATGCTAACAACACATAGTTTGATATCCTGAAACCCTATCAAACCGTGAATCCTTGTGTGGTTTTTTTGCCTGAGGTGTGCACTTTACAAGTTTGCTCAAGTTGTTTCCACGTATCCTTTGAATTTGAGTTTCTGTTCTTGATAATAGGGTTCAAAGACTCATATGGGAGGAACTATATGCGTCAAGGGTCAAGGAGAAGTTACTTTAATGTTATGGACTGCAAAGCTGCAAATTTGTAAGGATCTCGTATTGATTATAACTTACTGGCATGTTATAAATGTTATGGACTGCAAAGCTATTAGTTATCCTTGATAATAAACTCATTTCACACAAACTTGTTCTAGAGTGTTTGATTAGATTAAGTGTTGGAGCGTTACTATCTTACAATTATGGTAGTCATAGTTTAAAAGTAGATTGAAGATAGAAAAGCATGGAAGTTCATTCATTTGTTTATGTTGATTTTGTATGATTTGAGTAGTATGACTATCCTGCAGTTATGGTAATCATAAATTAATTAGTTGGTTGTATTGATAAGTTTGTTTACGTTGAGTTGTTACGTTCTTGTGTTAAGTTCTTTTAATAAGTTATTATATTCTTGTGTTTACGTCCTTCCAAGAAGTGTTTCAATGTAATTATCTTTTCTAGTCTTGTGTAGGTCAAAGAATGGCAAAAAGCCATGACATCAACAATTCGAAACAGGGAACTTTCAATTCATACTCTCTTAGTTTACTTGTGATCTTTCATTTTCAGGTGGTTTTTCTTCCAATGTTGTTGTGTTATGCTAAAATTTATTGGTGTTAGGCCGTTAACTTTTGAGTGTAGTAAAGTTAAATTAATTGGTGTTAGGCCGTTAACTTTTGAGTGTAAGAGTTTTATATATTAAAAAACTATAAAAATATAGGGAGGTCCATAAGGAAAGTGTTTTGATGAATGATTTGCTTCAAAGATATGGATGATAGCTATGAATAAAATTTTATGCTATTAGCCCCCTTTATTGAAGAGATTGAAGACTTAGCTCCACTTGCGAGAACCAGCAACTCTATCTCCTACAATCTCACGGACGTCGAAGTTGCCCTTTTGGTTTTTTTGTTGGTTTTAAGCAACCCCCCTTTTCCACTTTGAAAGAAGTTGATTTGGTTCCACTAGTTTGTTTGTTTACTTTGTTTTTTTATTCGGTTTCTTTTTTTTTTTCTTCTTAGCAAGTTGTATAGCTGCTCCTTGGAAAAGACAAGGCTCCAAAATTGAGGTATGTTGGACTGTTTTTGCCATGTAGTTTTATTTTCCGTTCAGAAGTCACTTTTAGAATAAGGCTCTGAATTTAATTAGTGGTTCATTCTTGTTTTTGTTTCTGTCAAATATGCCAGATTCATAAATTCCGTTCGTATTCTTTATTCTTGTAAGTAATTTGAATGTTTAATTGAGGTAGATTTGGAACTATGAGGTTGCAACGTCGAAATTTACTTAGGGCTATAGTTCAGTGAGTTCATGTTTCTAACAACATTGGAGTCGAAATACTTATTGTGTGTTTATACTAAATTAAACTTGCTTATTGGAGGCTTTGGTTGCTGGTAGTGTTCGTGTTAATTATGAGTTTTCATGGCAATTACTGAAATGTAGTTTTGTTGGGTTGGTTTGTATCTGCAGCAAACTTCAGAGTGATGCGTTGAGAGAAGTCGTTATTTCATCTATCTTTGGTGATAGCAGCGAGAACAAGCGACAATTTACTGAGACTATTGAACTTCAGATTGGACAGAAAAACTATGATCCATAG

mRNA sequence

TATGCGCTTGATATCACTTATTTCAAGTCTTCACTTGACTGCCACCTCTTGGATTTGCTTTGGAACAAGTACTGGGTAAATACTCTTTCATCTTCTCCTTTCTTGGGTAATGGAGATTATGTTGGTGGTCAAATCTCAGATTTAGCTGAAAAACTTGAGCAGCTGGAAAATCAATTGGCTCACTCCCGGGTTCAAAGACTCATATGGGAGGAACTATATGCGTCAAGGGTCAAGGAGAACAAACTTCAGAGTGATGCGTTGAGAGAAGTCGTTATTTCATCTATCTTTGGTGATAGCAGCGAGAACAAGCGACAATTTACTGAGACTATTGAACTTCAGATTGGACAGAAAAACTATGATCCATAG

Coding sequence (CDS)

TATGCGCTTGATATCACTTATTTCAAGTCTTCACTTGACTGCCACCTCTTGGATTTGCTTTGGAACAAGTACTGGGTAAATACTCTTTCATCTTCTCCTTTCTTGGGTAATGGAGATTATGTTGGTGGTCAAATCTCAGATTTAGCTGAAAAACTTGAGCAGCTGGAAAATCAATTGGCTCACTCCCGGGTTCAAAGACTCATATGGGAGGAACTATATGCGTCAAGGGTCAAGGAGAACAAACTTCAGAGTGATGCGTTGAGAGAAGTCGTTATTTCATCTATCTTTGGTGATAGCAGCGAGAACAAGCGACAATTTACTGAGACTATTGAACTTCAGATTGGACAGAAAAACTATGATCCATAG

Protein sequence

YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPFLGNGDYVGGQISDLAEKLEQLENQLAHSRVQRLIWEELYASRVKENKLQSDALREVVISSIFGDSSENKRQFTETIELQIGQKNYDP
Homology
[Close]
BLAST of Lcy12g003350 vs. ExPASy Swiss-Prot
Match: Q8LAZ7 (COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana OX=3702 GN=CSN5A PE=1 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 8.2e-26
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 1   YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPFLGNGDYVGGQISDLAEKLEQLENQLA 60
           Y+LDITYFKSSLD HLLDLLWNKYWVNTLSSSP LGNGDYV GQISDLAEKLEQ E+QLA
Sbjct: 226 YSLDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAESQLA 285

Query: 61  HSR 64
           +SR
Sbjct: 286 NSR 288

[Close]
BLAST of Lcy12g003350 vs. ExPASy Swiss-Prot
Match: Q9FVU9 (COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana OX=3702 GN=CSN5B PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.8e-25
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 0 

Query: 1   YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPFLGNGDYVGGQISDLAEKLEQLENQLA 60
           Y+LD+TYFKSSLD HLLDLLWNKYWVNTLSSSP LGNGDYV GQISDLAEKLEQ E+ L 
Sbjct: 226 YSLDVTYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAESHLV 285

Query: 61  HSRVQRLIWEELYASRVKENKL 83
            SR   ++   L+  +  E++L
Sbjct: 286 QSRFGGVVPSSLHKKKEDESQL 307

[Close]
BLAST of Lcy12g003350 vs. ExPASy Swiss-Prot
Match: Q8H936 (COP9 signalosome complex subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=CSN5 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.3e-25
Identity = 56/68 (82.35%), Postives = 58/68 (85.29%), Query Frame = 0 

Query: 1   YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPFLGNGDYVGGQISDLAEKLEQLENQLA 60
           YALDITYFKSSLD HLLDLLWNKYWVNTLSSSP LGN DYV GQI DLA+KLEQ E QLA
Sbjct: 227 YALDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNRDYVAGQIFDLADKLEQAEGQLA 286

Query: 61  HSRVQRLI 69
           HSR   L+
Sbjct: 287 HSRYGMLM 294

[Close]
BLAST of Lcy12g003350 vs. ExPASy Swiss-Prot
Match: Q54PF3 (COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum OX=44689 GN=csn5 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.6e-21
Identity = 56/111 (50.45%), Postives = 75/111 (67.57%), Query Frame = 0 

Query: 1   YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPFLGNGDYVGGQISDLAEKLEQLENQLA 60
           Y+L+ITYFKSSLD  LLD LWNKYWVNTLSSSP   N DY+ GQI+DL+EKLEQ E QL+
Sbjct: 221 YSLEITYFKSSLDQQLLDKLWNKYWVNTLSSSPIFSNRDYITGQINDLSEKLEQAETQLS 280

Query: 61  HSR---VQRLIWEELYASRVKENKLQSDALREVVISSIFGDSSENKRQFTE 109
           HSR   + +   E L +   K++   +    + ++S +F +S  N+ Q T+
Sbjct: 281 HSRSSILDKKKEESLLSKVSKDSSKVTIEQVQGIMSQVFKNSIFNECQTTK 331

[Close]
BLAST of Lcy12g003350 vs. ExPASy Swiss-Prot
Match: Q6P635 (COP9 signalosome complex subunit 5 OS=Xenopus tropicalis OX=8364 GN=cops5 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-17
Identity = 43/59 (72.88%), Postives = 48/59 (81.36%), Query Frame = 0 

Query: 1   YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPFLGNGDYVGGQISDLAEKLEQLENQL 60
           YAL++TYFKSSLD  LL+LLWNKYWVNTLSSS  L N DY  GQ+ DL+EKLEQ E QL
Sbjct: 222 YALEVTYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNADYTTGQVFDLSEKLEQSEAQL 280

[Close]
BLAST of Lcy12g003350 vs. ExPASy TrEMBL
Match: A0A6J1GKC4 (COP9 signalosome complex subunit 5b-like OS=Cucurbita moschata OX=3662 GN=LOC111454705 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.5e-27
Identity = 63/68 (92.65%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 1   YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPFLGNGDYVGGQISDLAEKLEQLENQLA 60
           YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSP LGNGDYV GQISDLAEKLEQLENQLA
Sbjct: 235 YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQLENQLA 294

Query: 61  HSRVQRLI 69
           HSR   LI
Sbjct: 295 HSRFGPLI 302

[Close]
BLAST of Lcy12g003350 vs. ExPASy TrEMBL
Match: A0A6J1BVF4 (COP9 signalosome complex subunit 5a-like OS=Momordica charantia OX=3673 GN=LOC111005078 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.7e-27
Identity = 67/83 (80.72%), Postives = 68/83 (81.93%), Query Frame = 0 

Query: 1   YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPFLGNGDYVGGQISDLAEKLEQLENQLA 60
           YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSP LGNGDYV GQISDLAEKLEQ+ENQLA
Sbjct: 235 YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQVENQLA 294

Query: 61  HSRVQRLIWEELYASRVKENKLQ 84
           HSR   LI     A R KE   Q
Sbjct: 295 HSRFGSLI---APAQRKKEEDSQ 314

[Close]
BLAST of Lcy12g003350 vs. ExPASy TrEMBL
Match: A0A6J1KBB5 (COP9 signalosome complex subunit 5b-like OS=Cucurbita maxima OX=3661 GN=LOC111492347 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.0e-26
Identity = 67/83 (80.72%), Postives = 68/83 (81.93%), Query Frame = 0 

Query: 1   YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPFLGNGDYVGGQISDLAEKLEQLENQLA 60
           YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSP LGNGDYV GQISDLAEKLEQ+ENQLA
Sbjct: 235 YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQVENQLA 294

Query: 61  HSRVQRLIWEELYASRVKENKLQ 84
           HSR   LI     A R KE   Q
Sbjct: 295 HSRFGPLI---APAQRKKEEDSQ 314

[Close]
BLAST of Lcy12g003350 vs. ExPASy TrEMBL
Match: A0A5A7V9Z7 (COP9 signalosome complex subunit 5b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003160 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.0e-26
Identity = 62/68 (91.18%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 1   YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPFLGNGDYVGGQISDLAEKLEQLENQLA 60
           YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSP LGNGDYV GQISDLAEKLEQ+ENQLA
Sbjct: 235 YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQVENQLA 294

Query: 61  HSRVQRLI 69
           HSR   LI
Sbjct: 295 HSRFGPLI 302

[Close]
BLAST of Lcy12g003350 vs. ExPASy TrEMBL
Match: A0A0A0LPC3 (MPN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G378560 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.0e-26
Identity = 62/68 (91.18%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 1   YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPFLGNGDYVGGQISDLAEKLEQLENQLA 60
           YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSP LGNGDYV GQISDLAEKLEQ+ENQLA
Sbjct: 235 YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQVENQLA 294

Query: 61  HSRVQRLI 69
           HSR   LI
Sbjct: 295 HSRFGPLI 302

[Close]
BLAST of Lcy12g003350 vs. NCBI nr
Match: KAG6585421.1 (COP9 signalosome complex subunit 5b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.6 bits (327), Expect = 9.3e-27
Identity = 63/68 (92.65%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 1   YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPFLGNGDYVGGQISDLAEKLEQLENQLA 60
           YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSP LGNGDYV GQISDLAEKLEQLENQLA
Sbjct: 208 YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQLENQLA 267

Query: 61  HSRVQRLI 69
           HSR   LI
Sbjct: 268 HSRFGPLI 275

[Close]
BLAST of Lcy12g003350 vs. NCBI nr
Match: XP_022951989.1 (COP9 signalosome complex subunit 5b-like [Cucurbita moschata])

HSP 1 Score: 130.6 bits (327), Expect = 9.3e-27
Identity = 63/68 (92.65%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 1   YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPFLGNGDYVGGQISDLAEKLEQLENQLA 60
           YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSP LGNGDYV GQISDLAEKLEQLENQLA
Sbjct: 235 YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQLENQLA 294

Query: 61  HSRVQRLI 69
           HSR   LI
Sbjct: 295 HSRFGPLI 302

[Close]
BLAST of Lcy12g003350 vs. NCBI nr
Match: XP_023538610.1 (COP9 signalosome complex subunit 5b-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.6 bits (327), Expect = 9.3e-27
Identity = 63/68 (92.65%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 1   YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPFLGNGDYVGGQISDLAEKLEQLENQLA 60
           YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSP LGNGDYV GQISDLAEKLEQLENQLA
Sbjct: 235 YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQLENQLA 294

Query: 61  HSRVQRLI 69
           HSR   LI
Sbjct: 295 HSRFGPLI 302

[Close]
BLAST of Lcy12g003350 vs. NCBI nr
Match: KAG7020342.1 (COP9 signalosome complex subunit 5b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.6 bits (327), Expect = 9.3e-27
Identity = 63/68 (92.65%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 1   YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPFLGNGDYVGGQISDLAEKLEQLENQLA 60
           YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSP LGNGDYV GQISDLAEKLEQLENQLA
Sbjct: 235 YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQLENQLA 294

Query: 61  HSRVQRLI 69
           HSR   LI
Sbjct: 295 HSRFGPLI 302

[Close]
BLAST of Lcy12g003350 vs. NCBI nr
Match: XP_022132138.1 (COP9 signalosome complex subunit 5a-like [Momordica charantia])

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-26
Identity = 67/83 (80.72%), Postives = 68/83 (81.93%), Query Frame = 0 

Query: 1   YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPFLGNGDYVGGQISDLAEKLEQLENQLA 60
           YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSP LGNGDYV GQISDLAEKLEQ+ENQLA
Sbjct: 235 YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQVENQLA 294

Query: 61  HSRVQRLIWEELYASRVKENKLQ 84
           HSR   LI     A R KE   Q
Sbjct: 295 HSRFGSLI---APAQRKKEEDSQ 314

[Close]
BLAST of Lcy12g003350 vs. TAIR 10
Match: AT1G22920.1 (COP9 signalosome 5A )

HSP 1 Score: 117.9 bits (294), Expect = 5.8e-27
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 1   YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPFLGNGDYVGGQISDLAEKLEQLENQLA 60
           Y+LDITYFKSSLD HLLDLLWNKYWVNTLSSSP LGNGDYV GQISDLAEKLEQ E+QLA
Sbjct: 226 YSLDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAESQLA 285

Query: 61  HSR 64
           +SR
Sbjct: 286 NSR 288

[Close]
BLAST of Lcy12g003350 vs. TAIR 10
Match: AT1G22920.2 (COP9 signalosome 5A )

HSP 1 Score: 117.9 bits (294), Expect = 5.8e-27
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 1   YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPFLGNGDYVGGQISDLAEKLEQLENQLA 60
           Y+LDITYFKSSLD HLLDLLWNKYWVNTLSSSP LGNGDYV GQISDLAEKLEQ E+QLA
Sbjct: 226 YSLDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAESQLA 285

Query: 61  HSR 64
           +SR
Sbjct: 286 NSR 288

[Close]
BLAST of Lcy12g003350 vs. TAIR 10
Match: AT1G71230.1 (COP9-signalosome 5B )

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-26
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 0 

Query: 1   YALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPFLGNGDYVGGQISDLAEKLEQLENQLA 60
           Y+LD+TYFKSSLD HLLDLLWNKYWVNTLSSSP LGNGDYV GQISDLAEKLEQ E+ L 
Sbjct: 226 YSLDVTYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAESHLV 285

Query: 61  HSRVQRLIWEELYASRVKENKL 83
            SR   ++   L+  +  E++L
Sbjct: 286 QSRFGGVVPSSLHKKKEDESQL 307

[Close]
BLAST of Lcy12g003350 vs. TAIR 10
Match: AT2G27530.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-07
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 80  NKLQSDALREVVISSIFGDSSENKRQFTETIELQIGQKNYDP 122
           +KLQS+A+RE  I++I G S E KR F ET+ELQIG KNYDP
Sbjct: 2   SKLQSEAVRE-AITTIKGKSEEKKRNFVETVELQIGLKNYDP 42

[Close]
BLAST of Lcy12g003350 vs. TAIR 10
Match: AT2G27530.2 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-07
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 80  NKLQSDALREVVISSIFGDSSENKRQFTETIELQIGQKNYDP 122
           +KLQS+A+RE  I++I G S E KR F ET+ELQIG KNYDP
Sbjct: 2   SKLQSEAVRE-AITTIKGKSEEKKRNFVETVELQIGLKNYDP 42

The following BLAST results are available for this feature:
BLAST of Lcy12g003350 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LAZ78.2e-2688.89COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana OX=3702 GN=CSN5A PE=... [more]
Q9FVU91.8e-2568.29COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana OX=3702 GN=CSN5B PE=... [more]
Q8H9365.3e-2582.35COP9 signalosome complex subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=C... [more]
Q54PF33.6e-2150.45COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum OX=44689 GN=csn5 ... [more]
Q6P6352.4e-1772.88COP9 signalosome complex subunit 5 OS=Xenopus tropicalis OX=8364 GN=cops5 PE=2 S... [more]
BLAST of Lcy12g003350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GKC44.5e-2792.65COP9 signalosome complex subunit 5b-like OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1BVF47.7e-2780.72COP9 signalosome complex subunit 5a-like OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1KBB51.0e-2680.72COP9 signalosome complex subunit 5b-like OS=Cucurbita maxima OX=3661 GN=LOC11149... [more]
A0A5A7V9Z71.0e-2691.18COP9 signalosome complex subunit 5b-like OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A0A0LPC31.0e-2691.18MPN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G378560 PE=3 SV... [more]
BLAST of Lcy12g003350 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6585421.19.3e-2792.65COP9 signalosome complex subunit 5b, partial [Cucurbita argyrosperma subsp. soro... [more]
XP_022951989.19.3e-2792.65COP9 signalosome complex subunit 5b-like [Cucurbita moschata][more]
XP_023538610.19.3e-2792.65COP9 signalosome complex subunit 5b-like isoform X1 [Cucurbita pepo subsp. pepo][more]
KAG7020342.19.3e-2792.65COP9 signalosome complex subunit 5b [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022132138.11.6e-2680.72COP9 signalosome complex subunit 5a-like [Momordica charantia][more]
BLAST of Lcy12g003350 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G22920.15.8e-2788.89COP9 signalosome 5A [more]
AT1G22920.25.8e-2788.89COP9 signalosome 5A [more]
AT1G71230.11.3e-2668.29COP9-signalosome 5B [more]
AT2G27530.12.3e-0764.29Ribosomal protein L1p/L10e family [more]
AT2G27530.22.3e-0764.29Ribosomal protein L1p/L10e family [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 45..65
NoneNo IPR availableGENE3D3.40.140.10Cytidine Deaminase, domain 2coord: 1..36
e-value: 1.4E-7
score: 33.0
NoneNo IPR availableGENE3D3.30.190.20coord: 80..121
e-value: 2.3E-6
score: 29.7
NoneNo IPR availablePANTHERPTHR10410EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATEDcoord: 1..81
IPR040961Cop9 signalosome subunit 5 C-terminal domainPFAMPF18323CSN5_Ccoord: 30..84
e-value: 1.2E-8
score: 35.7
IPR037740COP9 signalosome complex subunit 5PANTHERPTHR10410:SF33BNAC07G13420D PROTEINcoord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g003350.1Lcy12g003350.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000338 protein deneddylation
biological_process GO:1990641 response to iron ion starvation
cellular_component GO:0008180 COP9 signalosome
cellular_component GO:0005737 cytoplasm
molecular_function GO:0070122 isopeptidase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0019784 NEDD8-specific protease activity