Lcy12g003300 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g003300
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionPhloem filament protein
LocationChr12: 10017117 .. 10017868 (-)
RNA-Seq ExpressionLcy12g003300
SyntenyLcy12g003300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGAAACTACATCAAAGGGTTACGATGCACATTGGAGGGGGATTTGGCATCAACTTGGGTGGTTGGGTTGATCCCTTCCATGGTCATGGCCATGGTCATGGTCGTGGTCATGGGCATGGGCATGGTCATGGTCATGGGCATGATCGACCTCCGAGTCCCGAACCTTATGGCAAATGGATAGAAATCTCTGTCCACGAACAAGAGGTGCAAGAAGTTGCAAAGTTTGCGGTGGCAGAGTACAATCGCATACACGATGACTGTTTGAAATACAAGTCGACATCTGCAGCTTGGTATATGGCTTTGGATGAGAAGAGCAAACAGTTCCGCCTCAATCTTCAAGGGGAAGACTGTTTGGGACGTAGCCTCAACTATGAGGCTATGGTTCATGAAAACAGAGTTCATCATGAAAAAGTCTGGACGCTTGAATCATTCAAGCGTGCATAAACAAGTGATGGAACTTCGTTTTAAGTTTCTCCTAACTACTAGGTCGCTTATGTTGTAATGGGTTTGACTAGATCCATGAATAATATATATACGACCAAATCGTAATAAAATAAAGCTTTATAAATAATCGCTTCTCTATGTTTAAACTATGTATCGTCGTAAATCAACTTCTTAGATTCCTACGAATATATCTTTGAAATAGTCAAAATTAGTTTAATAGAAAATTAGAAATCACTTAGGACCCGTTGGATAACGTTCCCGTTTCCTGTTTTCCATTTCTGGTTTCTTGCGTTTCTTGTTTTTCTTT

mRNA sequence

TTTGAAACTACATCAAAGGGTTACGATGCACATTGGAGGGGGATTTGGCATCAACTTGGGTGGTTGGGTTGATCCCTTCCATGGTCATGGCCATGGTCATGGTCGTGGTCATGGGCATGGGCATGGTCATGGTCATGGGCATGATCGACCTCCGAGTCCCGAACCTTATGGCAAATGGATAGAAATCTCTGTCCACGAACAAGAGGTGCAAGAAGTTGCAAAGTTTGCGGTGGCAGAGTACAATCGCATACACGATGACTGTTTGAAATACAAGTCGACATCTGCAGCTTGGTATATGGCTTTGGATGAGAAGAGCAAACAGTTCCGCCTCAATCTTCAAGGGGAAGACTGTTTGGGACGTAGCCTCAACTATGAGGCTATGGTTCATGAAAACAGAGTTCATCATGAAAAAGTCTGGACGCTTGAATCATTCAAGCGTGCATAAACAAGTGATGGAACTTCGTTTTAAGTTTCTCCTAACTACTAGGTCGCTTATGTTGTAATGGGTTTGACTAGATCCATGAATAATATATATACGACCAAATCGTAATAAAATAAAGCTTTATAAATAATCGCTTCTCTATGTTTAAACTATGTATCGTCGTAAATCAACTTCTTAGATTCCTACGAATATATCTTTGAAATAGTCAAAATTAGTTTAATAGAAAATTAGAAATCACTTAGGACCCGTTGGATAACGTTCCCGTTTCCTGTTTTCCATTTCTGGTTTCTTGCGTTTCTTGTTTTTCTTT

Coding sequence (CDS)

ATGCACATTGGAGGGGGATTTGGCATCAACTTGGGTGGTTGGGTTGATCCCTTCCATGGTCATGGCCATGGTCATGGTCGTGGTCATGGGCATGGGCATGGTCATGGTCATGGGCATGATCGACCTCCGAGTCCCGAACCTTATGGCAAATGGATAGAAATCTCTGTCCACGAACAAGAGGTGCAAGAAGTTGCAAAGTTTGCGGTGGCAGAGTACAATCGCATACACGATGACTGTTTGAAATACAAGTCGACATCTGCAGCTTGGTATATGGCTTTGGATGAGAAGAGCAAACAGTTCCGCCTCAATCTTCAAGGGGAAGACTGTTTGGGACGTAGCCTCAACTATGAGGCTATGGTTCATGAAAACAGAGTTCATCATGAAAAAGTCTGGACGCTTGAATCATTCAAGCGTGCATAA

Protein sequence

MHIGGGFGINLGGWVDPFHGHGHGHGRGHGHGHGHGHGHDRPPSPEPYGKWIEISVHEQEVQEVAKFAVAEYNRIHDDCLKYKSTSAAWYMALDEKSKQFRLNLQGEDCLGRSLNYEAMVHENRVHHEKVWTLESFKRA
Homology
BLAST of Lcy12g003300 vs. ExPASy TrEMBL
Match: A0A6J1EIQ8 (uncharacterized protein LOC111434517 OS=Cucurbita moschata OX=3662 GN=LOC111434517 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.9e-09
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 0

Query: 50  KWIEI-SVHEQEVQEVAKFAVAEYNRIHDDCLKYKSTSAAWYMALDEKSKQFRLNLQGED 109
           KWI+I  V+   +Q+VAKFAV ++N  H DCL Y S    WY+ L   + ++RL+++  D
Sbjct: 16  KWIKIPDVNGHCLQQVAKFAVEKFNAEHGDCLIYNSIFEGWYLELGSNNLKYRLHIKAVD 75

Query: 110 CLGRSLNYEAMVHENRVHHEKVWTLESF 137
            LGR L YE +V E +   E++  L SF
Sbjct: 76  FLGRLLIYEVVVFEEKPDKERIRKLISF 103

BLAST of Lcy12g003300 vs. ExPASy TrEMBL
Match: A0A6J1JKF7 (uncharacterized protein LOC111486626 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486626 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.4e-09
Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 0

Query: 44  SPEPY-GKWIEI-SVHEQEVQEVAKFAVAEYNRIHDDCLKYKSTSAAWYMALDEKSKQFR 103
           SPEP   KWI+I +V    VQE+AKFAV E+N+ + D LKY      W+M L   + +FR
Sbjct: 508 SPEPQEKKWIKIPNVQVPLVQELAKFAVDEHNK-NGDGLKYIEVYEGWFMDLGHDNIKFR 567

Query: 104 LNLQGEDCLGRSLNYEAMVHENRVHHEKVWTLESFK 138
           L+L+ +D LGR  NYEA+V       +++  LESFK
Sbjct: 568 LHLKAKDWLGRIRNYEAVVLVEHFWSKRIKILESFK 602

BLAST of Lcy12g003300 vs. ExPASy TrEMBL
Match: A0A6J1JG70 (uncharacterized protein LOC111486626 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486626 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.4e-09
Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 0

Query: 44  SPEPY-GKWIEI-SVHEQEVQEVAKFAVAEYNRIHDDCLKYKSTSAAWYMALDEKSKQFR 103
           SPEP   KWI+I +V    VQE+AKFAV E+N+ + D LKY      W+M L   + +FR
Sbjct: 312 SPEPQEKKWIKIPNVQVPLVQELAKFAVDEHNK-NGDGLKYIEVYEGWFMDLGHDNIKFR 371

Query: 104 LNLQGEDCLGRSLNYEAMVHENRVHHEKVWTLESFK 138
           L+L+ +D LGR  NYEA+V       +++  LESFK
Sbjct: 372 LHLKAKDWLGRIRNYEAVVLVEHFWSKRIKILESFK 406

BLAST of Lcy12g003300 vs. ExPASy TrEMBL
Match: P94012 (Phloem filament protein OS=Cucurbita maxima OX=3661 GN=PP1 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.4e-09
Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 0

Query: 44  SPEPY-GKWIEI-SVHEQEVQEVAKFAVAEYNRIHDDCLKYKSTSAAWYMALDEKSKQFR 103
           SPEP   KWI+I +V    VQE+AKFAV E+N+ + D LKY      W+M L   + +FR
Sbjct: 312 SPEPQEKKWIKIPNVQVPLVQELAKFAVDEHNK-NGDGLKYIEVYEGWFMDLGHDNIKFR 371

Query: 104 LNLQGEDCLGRSLNYEAMVHENRVHHEKVWTLESFK 138
           L+L+ +D LGR  NYEA+V       +++  LESFK
Sbjct: 372 LHLKAKDWLGRIRNYEAVVLVEHFWSKRIKILESFK 406

BLAST of Lcy12g003300 vs. ExPASy TrEMBL
Match: Q7DMD5 (Phloem filament protein (Fragment) OS=Cucurbita maxima OX=3661 GN=cPC7 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.4e-09
Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 0

Query: 44  SPEPY-GKWIEI-SVHEQEVQEVAKFAVAEYNRIHDDCLKYKSTSAAWYMALDEKSKQFR 103
           SPEP   KWI+I +V    VQE+AKFAV E+N+ + D LKY      W+M L   + +FR
Sbjct: 119 SPEPQEKKWIKIPNVQVPLVQELAKFAVDEHNK-NGDGLKYIEVYEGWFMDLGHDNIKFR 178

Query: 104 LNLQGEDCLGRSLNYEAMVHENRVHHEKVWTLESFK 138
           L+L+ +D LGR  NYEA+V       +++  LESFK
Sbjct: 179 LHLKAKDWLGRIRNYEAVVLVEHFWSKRIKILESFK 213

BLAST of Lcy12g003300 vs. NCBI nr
Match: XP_023522970.1 (uncharacterized protein LOC111787034 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-10
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 0

Query: 50  KWIEI-SVHEQEVQEVAKFAVAEYNRIHDDCLKYKSTSAAWYMALDEKSKQFRLNLQGED 109
           KWI+I  V E  VQ +AKFAV +YN IH +  KYKS    W+M L  +   F L+++ +D
Sbjct: 27  KWIQIPDVSEVCVQNIAKFAVQDYNLIHKESFKYKSIKCGWFMELKGEDLAFHLHIEVKD 86

Query: 110 CLGRSLNYEAMVHENRVHHEKVWTLESFK 138
           CLGR    + +V E +   EKV  LES K
Sbjct: 87  CLGRIFELDVVVSEKKACGEKVRKLESAK 115

BLAST of Lcy12g003300 vs. NCBI nr
Match: XP_038887075.1 (uncharacterized protein LOC120077251 [Benincasa hispida] >XP_038887076.1 uncharacterized protein LOC120077253 [Benincasa hispida])

HSP 1 Score: 75.9 bits (185), Expect = 3.1e-10
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 0

Query: 51  WIEI-SVHEQEVQEVAKFAVAEYNRIHDDCLKYKSTSAAWYMALD-EKSKQFRLNLQGED 110
           WIEI +V E  VQEVAKFAVAEYN+  DD L Y  T+  WY  ++ E    F L ++ +D
Sbjct: 130 WIEIPNVEESCVQEVAKFAVAEYNKQADDNLVYICTTQGWYQEVNAEYGLLFDLRIKTKD 189

Query: 111 CLGRSLNYEAMVHENRVHHEKVWTLESFK 138
           C GR   Y+A+V E+R  +EK+  L SFK
Sbjct: 190 CFGRVREYKALVSEDRQPNEKIRILISFK 218

BLAST of Lcy12g003300 vs. NCBI nr
Match: KAG6588758.1 (hypothetical protein SDJN03_17323, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.5 bits (184), Expect = 4.1e-10
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = 0

Query: 50  KWIEI-SVHEQEVQEVAKFAVAEYNRIHDDCLKYKSTSAAWYMALDEKSKQFRLNLQGED 109
           KWI+I  V E  VQ +AKFAV +YN +H +  KYKS    W+M L  +   +RL+++ +D
Sbjct: 27  KWIQIPDVSEVCVQNIAKFAVEDYNLVHKESFKYKSIKCGWFMELKGEDLAYRLHIEVKD 86

Query: 110 CLGRSLNYEAMVHENRVHHEKVWTLESFK 138
           CLGR      +V E +   EK+  LES K
Sbjct: 87  CLGRIFELNVVVSEKKTCAEKIRKLESAK 115

BLAST of Lcy12g003300 vs. NCBI nr
Match: KAG6588755.1 (hypothetical protein SDJN03_17320, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.1 bits (183), Expect = 5.3e-10
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 0

Query: 50  KWIEI-SVHEQEVQEVAKFAVAEYNRIHDDCLKYKSTSAAWYMALDEKSKQFRLNLQGED 109
           KWI+I  V E  VQ +AKFAV +YN IH +  KY+S    W+M L  +   FRL++  +D
Sbjct: 27  KWIQIPDVSEVCVQNIAKFAVQDYNLIHKESFKYQSIKCGWFMELKGEDLAFRLHIVVKD 86

Query: 110 CLGRSLNYEAMVHENRVHHEKVWTLESFK 138
           CLGR    + +V E +   EKV  LES K
Sbjct: 87  CLGRIFELDVVVSEKKTCAEKVRKLESAK 115

BLAST of Lcy12g003300 vs. NCBI nr
Match: KAG6588757.1 (hypothetical protein SDJN03_17322, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.1 bits (183), Expect = 5.3e-10
Identity = 39/89 (43.82%), Postives = 54/89 (60.67%), Query Frame = 0

Query: 50  KWIEI-SVHEQEVQEVAKFAVAEYNRIHDDCLKYKSTSAAWYMALDEKSKQFRLNLQGED 109
           KWI+I  V E  VQ VAKFAV +YN +H +  KYKS    W+M L  +   +RL+++ +D
Sbjct: 27  KWIQIPDVSEVCVQNVAKFAVEDYNLVHKESFKYKSIKCGWFMELKGEDLAYRLHVEVKD 86

Query: 110 CLGRSLNYEAMVHENRVHHEKVWTLESFK 138
           CLGR    + +V E +   EK+  LES K
Sbjct: 87  CLGRIFVLDVVVSEKKTCAEKIRKLESAK 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EIQ84.9e-0942.05uncharacterized protein LOC111434517 OS=Cucurbita moschata OX=3662 GN=LOC1114345... [more]
A0A6J1JKF76.4e-0945.83uncharacterized protein LOC111486626 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1JG706.4e-0945.83uncharacterized protein LOC111486626 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
P940126.4e-0945.83Phloem filament protein OS=Cucurbita maxima OX=3661 GN=PP1 PE=4 SV=1[more]
Q7DMD56.4e-0945.83Phloem filament protein (Fragment) OS=Cucurbita maxima OX=3661 GN=cPC7 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
XP_023522970.12.4e-1044.94uncharacterized protein LOC111787034 [Cucurbita pepo subsp. pepo][more]
XP_038887075.13.1e-1049.44uncharacterized protein LOC120077251 [Benincasa hispida] >XP_038887076.1 unchara... [more]
KAG6588758.14.1e-1042.70hypothetical protein SDJN03_17323, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6588755.15.3e-1044.94hypothetical protein SDJN03_17320, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6588757.15.3e-1043.82hypothetical protein SDJN03_17322, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009994Phloem filament PP1PFAMPF07430PP1coord: 61..136
e-value: 9.8E-22
score: 76.8
NoneNo IPR availableGENE3D3.10.450.10coord: 44..138
e-value: 4.6E-12
score: 48.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..48
NoneNo IPR availableSUPERFAMILY54403Cystatin/monellincoord: 49..137

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g003300.1Lcy12g003300.1mRNA