Lcy12g002720 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g002720
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
LocationChr12: 7796072 .. 7796296 (-)
RNA-Seq ExpressionLcy12g002720
SyntenyLcy12g002720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTTAGTTCATGCAGGCGGTTGGAGGTCCGATAATGGGACATTCAAAGTTGGGTATCTGGGGCAATTGGAGAATTTGATGAGGGAGAAACTGCCTGGACAGGACGTTCCAGCACAGAGCAGCATCGACTCTACGGTTCACACCTTAAAGAAACAATACCAAGCAATTGCAGAGATTTTGGGTCCTGGATGTAGCAACTTTGGGTGGAACGATGAATTTTAA

mRNA sequence

ATGTCCTTAGTTCATGCAGGCGGTTGGAGGTCCGATAATGGGACATTCAAAGTTGGGTATCTGGGGCAATTGGAGAATTTGATGAGGGAGAAACTGCCTGGACAGGACGTTCCAGCACAGAGCAGCATCGACTCTACGGTTCACACCTTAAAGAAACAATACCAAGCAATTGCAGAGATTTTGGGTCCTGGATGTAGCAACTTTGGGTGGAACGATGAATTTTAA

Coding sequence (CDS)

ATGTCCTTAGTTCATGCAGGCGGTTGGAGGTCCGATAATGGGACATTCAAAGTTGGGTATCTGGGGCAATTGGAGAATTTGATGAGGGAGAAACTGCCTGGACAGGACGTTCCAGCACAGAGCAGCATCGACTCTACGGTTCACACCTTAAAGAAACAATACCAAGCAATTGCAGAGATTTTGGGTCCTGGATGTAGCAACTTTGGGTGGAACGATGAATTTTAA

Protein sequence

MSLVHAGGWRSDNGTFKVGYLGQLENLMREKLPGQDVPAQSSIDSTVHTLKKQYQAIAEILGPGCSNFGWNDEF
Homology
BLAST of Lcy12g002720 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-19
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 0

Query: 1  MSLVHAGGWRSDNGTFKVGYLGQLENLMREKLPGQDVPAQSSIDSTVHTLKKQYQAIAEI 60
          + LV +GGWRSDNGTF+ GYL QL+ +M EKLPG ++   S+ID  V +LKK Y AIAE+
Sbjct: 25 VELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEM 84

Query: 61 LGPGCSNFGWNDEF 75
           GP CS FGWN+EF
Sbjct: 85 RGPSCSGFGWNEEF 98

BLAST of Lcy12g002720 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-19
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 0

Query: 1  MSLVHAGGWRSDNGTFKVGYLGQLENLMREKLPGQDVPAQSSIDSTVHTLKKQYQAIAEI 60
          + LV +GGWRSDNGTF+ GYL QL+ +M EKLPG ++   S+ID  V +LKK Y AIAE+
Sbjct: 25 VELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEM 84

Query: 61 LGPGCSNFGWNDEF 75
           GP CS FGWN+EF
Sbjct: 85 RGPSCSGFGWNEEF 98

BLAST of Lcy12g002720 vs. ExPASy TrEMBL
Match: A0A5A7UFK7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G00820 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.0e-19
Identity = 46/73 (63.01%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 1  MSLVHAGGWRSDNGTFKVGYLGQLENLMREKLPGQDVPAQSSIDSTVHTLKKQYQAIAEI 60
          M LV  GGW+SDNGTF+ GYL QL  +M EKLPG  V A + ID  + TLK+ +QAIAEI
Sbjct: 25 MELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLPGYQVRATTVIDCRIKTLKRTFQAIAEI 84

Query: 61 LGPGCSNFGWNDE 74
           GP CS FGWNDE
Sbjct: 85 RGPACSGFGWNDE 97

BLAST of Lcy12g002720 vs. ExPASy TrEMBL
Match: A0A5D3CQS4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00390 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.1e-18
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 0

Query: 1  MSLVHAGGWRSDNGTFKVGYLGQLENLMREKLPGQDVPAQSSIDSTVHTLKKQYQAIAEI 60
          + LV AGGWRS+NGTF+ GYL QL+ +M EKLP  ++    +ID  V +LKK YQAIAE+
Sbjct: 25 VELVSAGGWRSNNGTFRPGYLAQLQRMMAEKLPDTNIQGSPTIDYRVKSLKKTYQAIAEM 84

Query: 61 LGPGCSNFGWNDEF 75
           GP CS FGWN+EF
Sbjct: 85 RGPSCSGFGWNEEF 98

BLAST of Lcy12g002720 vs. ExPASy TrEMBL
Match: A0A5A7SWU2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00190 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.8e-18
Identity = 45/73 (61.64%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 1   MSLVHAGGWRSDNGTFKVGYLGQLENLMREKLPGQDVPAQSSIDSTVHTLKKQYQAIAEI 60
           M LV  GGW+SDNGTF+ GYL QL  +M EKLPG  V A + ID  + TLK+ +QAIAE+
Sbjct: 130 MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEM 189

Query: 61  LGPGCSNFGWNDE 74
            GP CS FGWNDE
Sbjct: 190 RGPACSGFGWNDE 202

BLAST of Lcy12g002720 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 3.3e-19
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 0

Query: 1  MSLVHAGGWRSDNGTFKVGYLGQLENLMREKLPGQDVPAQSSIDSTVHTLKKQYQAIAEI 60
          + LV +GGWRSDNGTF+ GYL QL+ +M EKLPG ++   S+ID  V +LKK Y AIAE+
Sbjct: 25 VELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEM 84

Query: 61 LGPGCSNFGWNDEF 75
           GP CS FGWN+EF
Sbjct: 85 RGPSCSGFGWNEEF 98

BLAST of Lcy12g002720 vs. NCBI nr
Match: KAA0052259.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 1.7e-18
Identity = 46/73 (63.01%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 1  MSLVHAGGWRSDNGTFKVGYLGQLENLMREKLPGQDVPAQSSIDSTVHTLKKQYQAIAEI 60
          M LV  GGW+SDNGTF+ GYL QL  +M EKLPG  V A + ID  + TLK+ +QAIAEI
Sbjct: 25 MELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLPGYQVRATTVIDCRIKTLKRTFQAIAEI 84

Query: 61 LGPGCSNFGWNDE 74
           GP CS FGWNDE
Sbjct: 85 RGPACSGFGWNDE 97

BLAST of Lcy12g002720 vs. NCBI nr
Match: KAA0066605.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14213.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 2.2e-18
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 0

Query: 1  MSLVHAGGWRSDNGTFKVGYLGQLENLMREKLPGQDVPAQSSIDSTVHTLKKQYQAIAEI 60
          + LV AGGWRS+NGTF+ GYL QL+ +M EKLP  ++    +ID  V +LKK YQAIAE+
Sbjct: 25 VELVSAGGWRSNNGTFRPGYLAQLQRMMAEKLPDTNIQGSPTIDYRVKSLKKTYQAIAEM 84

Query: 61 LGPGCSNFGWNDEF 75
           GP CS FGWN+EF
Sbjct: 85 RGPSCSGFGWNEEF 98

BLAST of Lcy12g002720 vs. NCBI nr
Match: KAA0038975.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 3.7e-18
Identity = 45/73 (61.64%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 1  MSLVHAGGWRSDNGTFKVGYLGQLENLMREKLPGQDVPAQSSIDSTVHTLKKQYQAIAEI 60
          M LV  GGW+SDNGTF+ GYL QL  +M EKLPG  V A + ID  + TLK+ +QAIAE+
Sbjct: 25 MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEM 84

Query: 61 LGPGCSNFGWNDE 74
           GP CS FGWNDE
Sbjct: 85 RGPACSGFGWNDE 97

BLAST of Lcy12g002720 vs. NCBI nr
Match: KAA0046637.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 3.7e-18
Identity = 45/73 (61.64%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 1  MSLVHAGGWRSDNGTFKVGYLGQLENLMREKLPGQDVPAQSSIDSTVHTLKKQYQAIAEI 60
          M LV  GGW+SDNGTF+ GYL QL  +M EKLPG  V A + ID  + TLK+ +QAIAE+
Sbjct: 25 MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEM 84

Query: 61 LGPGCSNFGWNDE 74
           GP CS FGWNDE
Sbjct: 85 RGPACSGFGWNDE 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U0H71.6e-1960.81Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B4L31.6e-1960.81uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
A0A5A7UFK78.0e-1963.01Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CQS41.1e-1859.46Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SWU21.8e-1861.64Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
XP_008441954.13.3e-1960.81PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... [more]
KAA0052259.11.7e-1863.01retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0066605.12.2e-1859.46retrotransposon protein [Cucumis melo var. makuwa] >TYK14213.1 retrotransposon p... [more]
KAA0038975.13.7e-1861.64retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0046637.13.7e-1861.64retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 2..72
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 2..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g002720.1Lcy12g002720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane