Lcy12g001930 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g001930
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	MuDRA-like transposase
Location	Chr12: 4592549 .. 4592983 (-)
RNA-Seq Expression	Lcy12g001930
Synteny	Lcy12g001930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATGTGGAAAAATTTTGAGTTTAGGGTTAAGAAATCCACGAAGTCTTTGTTCGTGGTGAAATGTATAATTGAATCTTGCAAATGGAAAGTTAGAGCTATAAATTCGAAGGGTTATGACGTATTTAAGATTTCGAAATATTATAATGTCCATACATGCTCCCATGAATTACTAAATCACCACCATAGACAAGCGAAGAGTTGGGTGGTAGGTCATTTGATTAAGTCGAAATTCGAAGATGTAGGACGAATTTACAAGCCGAAGGACATTATACAGGACATGCGAAAAGATTACTGGGTCACTATTAGTTATGAGATAGCATGGCGGGCCAGAGAGGTGGCACTAGCTTTTGTTAGAGGGTCACCAGAAGAGTCATTTGATCACTTACATGCATATGGTGAAGCGCTGAAGATAATGAACCCTATGATATAA

mRNA sequence

ATGGCCATGTGGAAAAATTTTGAGTTTAGGGTTAAGAAATCCACGAAGTCTTTGTTCGTGGTGAAATGTATAATTGAATCTTGCAAATGGAAAGTTAGAGCTATAAATTCGAAGGGTTATGACGTATTTAAGATTTCGAAATATTATAATGTCCATACATGCTCCCATGAATTACTAAATCACCACCATAGACAAGCGAAGAGTTGGGTGGTAGGTCATTTGATTAAGTCGAAATTCGAAGATGTAGGACGAATTTACAAGCCGAAGGACATTATACAGGACATGCGAAAAGATTACTGGGTCACTATTAGTTATGAGATAGCATGGCGGGCCAGAGAGGTGGCACTAGCTTTTGTTAGAGGGTCACCAGAAGAGTCATTTGATCACTTACATGCATATGGTGAAGCGCTGAAGATAATGAACCCTATGATATAA

Coding sequence (CDS)

ATGGCCATGTGGAAAAATTTTGAGTTTAGGGTTAAGAAATCCACGAAGTCTTTGTTCGTGGTGAAATGTATAATTGAATCTTGCAAATGGAAAGTTAGAGCTATAAATTCGAAGGGTTATGACGTATTTAAGATTTCGAAATATTATAATGTCCATACATGCTCCCATGAATTACTAAATCACCACCATAGACAAGCGAAGAGTTGGGTGGTAGGTCATTTGATTAAGTCGAAATTCGAAGATGTAGGACGAATTTACAAGCCGAAGGACATTATACAGGACATGCGAAAAGATTACTGGGTCACTATTAGTTATGAGATAGCATGGCGGGCCAGAGAGGTGGCACTAGCTTTTGTTAGAGGGTCACCAGAAGAGTCATTTGATCACTTACATGCATATGGTGAAGCGCTGAAGATAATGAACCCTATGATATAA

Protein sequence

MAMWKNFEFRVKKSTKSLFVVKCIIESCKWKVRAINSKGYDVFKISKYYNVHTCSHELLNHHHRQAKSWVVGHLIKSKFEDVGRIYKPKDIIQDMRKDYWVTISYEIAWRAREVALAFVRGSPEESFDHLHAYGEALKIMNPMI

Homology

[Close]

BLAST of Lcy12g001930 vs. ExPASy TrEMBL
Match: A0A6J1DPC2 (uncharacterized protein LOC111022579 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022579 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 4.4e-45
Identity = 88/142 (61.97%), Postives = 111/142 (78.17%), Query Frame = 0


Query: 1   MAMWKNFEFRVKKSTKSLFVVKCIIESCKWKVRAINSKGYDVFKISKYYNVHTCSHELLN 60
           MAM +NFEFRVKKSTK L  + C+ E+CKW++RA+   G D+F+ISKY NVH+CS +L+N
Sbjct: 205 MAMKRNFEFRVKKSTKELIYIVCVDENCKWRIRALKLGGSDIFRISKYVNVHSCSLDLMN 264

Query: 61  HHHRQAKSWVVGHLIKSKFEDVGRIYKPKDIIQDMRKDYWVTISYEIAWRAREVALAFVR 120
            HHRQAK+WVVG LIKSKF  V   YKP++II+DMR+DY + +SYE AWRARE     V+
Sbjct: 265 RHHRQAKAWVVGELIKSKFNGVRCQYKPREIIEDMRQDYGINMSYEKAWRARENVYMQVK 324

Query: 121 GSPEESFDHLHAYGEALKIMNP 143
           GS EES++ LH YGEALK+ NP
Sbjct: 325 GSSEESYNLLHRYGEALKLANP 346

[Close]

BLAST of Lcy12g001930 vs. ExPASy TrEMBL
Match: A0A6J1DRN0 (uncharacterized protein LOC111022579 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022579 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 4.4e-45
Identity = 88/142 (61.97%), Postives = 111/142 (78.17%), Query Frame = 0


Query: 1   MAMWKNFEFRVKKSTKSLFVVKCIIESCKWKVRAINSKGYDVFKISKYYNVHTCSHELLN 60
           MAM +NFEFRVKKSTK L  + C+ E+CKW++RA+   G D+F+ISKY NVH+CS +L+N
Sbjct: 205 MAMKRNFEFRVKKSTKELIYIVCVDENCKWRIRALKLGGSDIFRISKYVNVHSCSLDLMN 264

Query: 61  HHHRQAKSWVVGHLIKSKFEDVGRIYKPKDIIQDMRKDYWVTISYEIAWRAREVALAFVR 120
            HHRQAK+WVVG LIKSKF  V   YKP++II+DMR+DY + +SYE AWRARE     V+
Sbjct: 265 RHHRQAKAWVVGELIKSKFNGVRCQYKPREIIEDMRQDYGINMSYEKAWRARENVYMQVK 324

Query: 121 GSPEESFDHLHAYGEALKIMNP 143
           GS EES++ LH YGEALK+ NP
Sbjct: 325 GSSEESYNLLHRYGEALKLANP 346

[Close]

BLAST of Lcy12g001930 vs. ExPASy TrEMBL
Match: A0A5A7VNP6 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001920 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 8.2e-44
Identity = 88/142 (61.97%), Postives = 107/142 (75.35%), Query Frame = 0


Query: 1   MAMWKNFEFRVKKSTKSLFVVKCIIESCKWKVRAINSKGYDVFKISKYYNVHTCSHELLN 60
           +AM KNF+F VKKSTK +  V+CI   C W++RA+  K  ++FKI KY  VH+CS + LN
Sbjct: 254 LAMKKNFQFVVKKSTKEVLFVRCIDNKCGWRLRAVRLKDSNIFKIKKYVKVHSCSLKFLN 313

Query: 61  HHHRQAKSWVVGHLIKSKFEDVGRIYKPKDIIQDMRKDYWVTISYEIAWRAREVALAFVR 120
             HRQAKSWVVG LIKSKF+  GRIYKP+DII+DMR+DY + +SYE AWRARE A   VR
Sbjct: 314 RDHRQAKSWVVGELIKSKFKGAGRIYKPRDIIEDMRQDYGINMSYEKAWRARENAYERVR 373

Query: 121 GSPEESFDHLHAYGEALKIMNP 143
           GSPEE ++ LH YGEALK  NP
Sbjct: 374 GSPEEPYNLLHRYGEALKFTNP 395

[Close]

BLAST of Lcy12g001930 vs. ExPASy TrEMBL
Match: A0A5D3DQU5 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G001320 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.1e-43
Identity = 89/142 (62.68%), Postives = 107/142 (75.35%), Query Frame = 0


Query: 1   MAMWKNFEFRVKKSTKSLFVVKCIIESCKWKVRAINSKGYDVFKISKYYNVHTCSHELLN 60
           +AM KNF+F VKKSTK +  V+CI   C W++RA+  K  ++FKI KY  VH+CS E LN
Sbjct: 254 LAMKKNFQFVVKKSTKEVLFVRCIDNKCGWRLRAVRLKDSNIFKIKKYVKVHSCSLEFLN 313

Query: 61  HHHRQAKSWVVGHLIKSKFEDVGRIYKPKDIIQDMRKDYWVTISYEIAWRAREVALAFVR 120
             HRQAKSWVVG LIKSKF+  GRIYKP+DII+DMR+DY + +SYE AWRARE A   VR
Sbjct: 314 RDHRQAKSWVVGELIKSKFKGPGRIYKPRDIIEDMRQDYGINMSYEKAWRARENAYERVR 373

Query: 121 GSPEESFDHLHAYGEALKIMNP 143
           GSPEES++ L  YGEALK  NP
Sbjct: 374 GSPEESYNLLRRYGEALKFTNP 395

[Close]

BLAST of Lcy12g001930 vs. ExPASy TrEMBL
Match: Q5GIT1 (MuDRA transposase-like OS=Cucumis melo OX=3656 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 7.0e-43
Identity = 88/141 (62.41%), Postives = 106/141 (75.18%), Query Frame = 0


Query: 1   MAMWKNFEFRVKKSTKSLFVVKCIIESCKWKVRAINSKGYDVFKISKYYNVHTCSHELLN 60
           +AM KNF+F VKKSTK +  V+CI   C W++RA+  K  ++FKI KY  VH+CS E LN
Sbjct: 254 LAMKKNFQFVVKKSTKEVLFVRCIDNKCGWRLRAVRLKDSNIFKIKKYVKVHSCSLEFLN 313

Query: 61  HHHRQAKSWVVGHLIKSKFEDVGRIYKPKDIIQDMRKDYWVTISYEIAWRAREVALAFVR 120
             HRQAKSWVVG LIKSKF+  GRIYKP+DII+DMR+DY + +SYE AWRARE A   VR
Sbjct: 314 RDHRQAKSWVVGELIKSKFKGPGRIYKPRDIIEDMRQDYGINMSYEKAWRARENAYERVR 373

Query: 121 GSPEESFDHLHAYGEALKIMN 142
           GSPEES++ L  YGEALK  N
Sbjct: 374 GSPEESYNLLRRYGEALKFTN 394

[Close]

BLAST of Lcy12g001930 vs. NCBI nr
Match: XP_022155431.1 (uncharacterized protein LOC111022579 isoform X1 [Momordica charantia])

HSP 1 Score: 190.7 bits (483), Expect = 9.0e-45
Identity = 88/142 (61.97%), Postives = 111/142 (78.17%), Query Frame = 0


Query: 1   MAMWKNFEFRVKKSTKSLFVVKCIIESCKWKVRAINSKGYDVFKISKYYNVHTCSHELLN 60
           MAM +NFEFRVKKSTK L  + C+ E+CKW++RA+   G D+F+ISKY NVH+CS +L+N
Sbjct: 205 MAMKRNFEFRVKKSTKELIYIVCVDENCKWRIRALKLGGSDIFRISKYVNVHSCSLDLMN 264

Query: 61  HHHRQAKSWVVGHLIKSKFEDVGRIYKPKDIIQDMRKDYWVTISYEIAWRAREVALAFVR 120
            HHRQAK+WVVG LIKSKF  V   YKP++II+DMR+DY + +SYE AWRARE     V+
Sbjct: 265 RHHRQAKAWVVGELIKSKFNGVRCQYKPREIIEDMRQDYGINMSYEKAWRARENVYMQVK 324

Query: 121 GSPEESFDHLHAYGEALKIMNP 143
           GS EES++ LH YGEALK+ NP
Sbjct: 325 GSSEESYNLLHRYGEALKLANP 346

[Close]

BLAST of Lcy12g001930 vs. NCBI nr
Match: XP_022155432.1 (uncharacterized protein LOC111022579 isoform X2 [Momordica charantia])

HSP 1 Score: 190.7 bits (483), Expect = 9.0e-45
Identity = 88/142 (61.97%), Postives = 111/142 (78.17%), Query Frame = 0


Query: 1   MAMWKNFEFRVKKSTKSLFVVKCIIESCKWKVRAINSKGYDVFKISKYYNVHTCSHELLN 60
           MAM +NFEFRVKKSTK L  + C+ E+CKW++RA+   G D+F+ISKY NVH+CS +L+N
Sbjct: 205 MAMKRNFEFRVKKSTKELIYIVCVDENCKWRIRALKLGGSDIFRISKYVNVHSCSLDLMN 264

Query: 61  HHHRQAKSWVVGHLIKSKFEDVGRIYKPKDIIQDMRKDYWVTISYEIAWRAREVALAFVR 120
            HHRQAK+WVVG LIKSKF  V   YKP++II+DMR+DY + +SYE AWRARE     V+
Sbjct: 265 RHHRQAKAWVVGELIKSKFNGVRCQYKPREIIEDMRQDYGINMSYEKAWRARENVYMQVK 324

Query: 121 GSPEESFDHLHAYGEALKIMNP 143
           GS EES++ LH YGEALK+ NP
Sbjct: 325 GSSEESYNLLHRYGEALKLANP 346

[Close]

BLAST of Lcy12g001930 vs. NCBI nr
Match: KAA0068206.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 186.4 bits (472), Expect = 1.7e-43
Identity = 88/142 (61.97%), Postives = 107/142 (75.35%), Query Frame = 0


Query: 1   MAMWKNFEFRVKKSTKSLFVVKCIIESCKWKVRAINSKGYDVFKISKYYNVHTCSHELLN 60
           +AM KNF+F VKKSTK +  V+CI   C W++RA+  K  ++FKI KY  VH+CS + LN
Sbjct: 254 LAMKKNFQFVVKKSTKEVLFVRCIDNKCGWRLRAVRLKDSNIFKIKKYVKVHSCSLKFLN 313

Query: 61  HHHRQAKSWVVGHLIKSKFEDVGRIYKPKDIIQDMRKDYWVTISYEIAWRAREVALAFVR 120
             HRQAKSWVVG LIKSKF+  GRIYKP+DII+DMR+DY + +SYE AWRARE A   VR
Sbjct: 314 RDHRQAKSWVVGELIKSKFKGAGRIYKPRDIIEDMRQDYGINMSYEKAWRARENAYERVR 373

Query: 121 GSPEESFDHLHAYGEALKIMNP 143
           GSPEE ++ LH YGEALK  NP
Sbjct: 374 GSPEEPYNLLHRYGEALKFTNP 395

[Close]

BLAST of Lcy12g001930 vs. NCBI nr
Match: TYK25902.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 186.0 bits (471), Expect = 2.2e-43
Identity = 89/142 (62.68%), Postives = 107/142 (75.35%), Query Frame = 0


Query: 1   MAMWKNFEFRVKKSTKSLFVVKCIIESCKWKVRAINSKGYDVFKISKYYNVHTCSHELLN 60
           +AM KNF+F VKKSTK +  V+CI   C W++RA+  K  ++FKI KY  VH+CS E LN
Sbjct: 254 LAMKKNFQFVVKKSTKEVLFVRCIDNKCGWRLRAVRLKDSNIFKIKKYVKVHSCSLEFLN 313

Query: 61  HHHRQAKSWVVGHLIKSKFEDVGRIYKPKDIIQDMRKDYWVTISYEIAWRAREVALAFVR 120
             HRQAKSWVVG LIKSKF+  GRIYKP+DII+DMR+DY + +SYE AWRARE A   VR
Sbjct: 314 RDHRQAKSWVVGELIKSKFKGPGRIYKPRDIIEDMRQDYGINMSYEKAWRARENAYERVR 373

Query: 121 GSPEESFDHLHAYGEALKIMNP 143
           GSPEES++ L  YGEALK  NP
Sbjct: 374 GSPEESYNLLRRYGEALKFTNP 395

[Close]

BLAST of Lcy12g001930 vs. NCBI nr
Match: KAA0054865.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-42
Identity = 88/141 (62.41%), Postives = 106/141 (75.18%), Query Frame = 0


Query: 1   MAMWKNFEFRVKKSTKSLFVVKCIIESCKWKVRAINSKGYDVFKISKYYNVHTCSHELLN 60
           +AM KNF+F VKKSTK +  V+CI   C W++RA+  K  ++FKI KY  VH+CS E LN
Sbjct: 254 LAMKKNFQFVVKKSTKEVLFVRCIDNKCGWRLRAVRLKDSNIFKIKKYVKVHSCSLEFLN 313

Query: 61  HHHRQAKSWVVGHLIKSKFEDVGRIYKPKDIIQDMRKDYWVTISYEIAWRAREVALAFVR 120
             HRQAKSWVVG LIKSKF+  GRIYKP+DII+DMR+DY + +SYE AWRARE A   VR
Sbjct: 314 RDHRQAKSWVVGELIKSKFKGPGRIYKPRDIIEDMRQDYGINMSYEKAWRARENAYERVR 373

Query: 121 GSPEESFDHLHAYGEALKIMN 142
           GSPEES++ L  YGEALK  N
Sbjct: 374 GSPEESYNLLRRYGEALKFTN 394

The following BLAST results are available for this feature:

BLAST of Lcy12g001930 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g001930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPC2	4.4e-45	61.97	uncharacterized protein LOC111022579 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DRN0	4.4e-45	61.97	uncharacterized protein LOC111022579 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A5A7VNP6	8.2e-44	61.97	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2...	[more]
A0A5D3DQU5	1.1e-43	62.68	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]
Q5GIT1	7.0e-43	62.41	MuDRA transposase-like OS=Cucumis melo OX=3656 PE=4 SV=1	[more]

BLAST of Lcy12g001930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155431.1	9.0e-45	61.97	uncharacterized protein LOC111022579 isoform X1 [Momordica charantia]	[more]
XP_022155432.1	9.0e-45	61.97	uncharacterized protein LOC111022579 isoform X2 [Momordica charantia]	[more]
KAA0068206.1	1.7e-43	61.97	MuDRA-like transposase [Cucumis melo var. makuwa]	[more]
TYK25902.1	2.2e-43	62.68	MuDRA-like transposase [Cucumis melo var. makuwa]	[more]
KAA0054865.1	1.4e-42	62.41	MuDRA-like transposase [Cucumis melo var. makuwa]	[more]

BLAST of Lcy12g001930 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004332	Transposase, MuDR, plant	PFAM	PF03108	DBD_Tnp_Mut	coord: 3..45 e-value: 2.8E-9 score: 36.8
None	No IPR available	PANTHER	PTHR31973:SF129	OS01G0334000 PROTEIN	coord: 2..128
None	No IPR available	PANTHER	PTHR31973	POLYPROTEIN, PUTATIVE-RELATED	coord: 2..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g001930.1	Lcy12g001930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity