Lcy12g001540 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g001540
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionF-box/LRR-repeat protein
LocationChr12: 2996313 .. 2996573 (+)
RNA-Seq ExpressionLcy12g001540
SyntenyLcy12g001540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTTTTACCCACTGTCAAGTCTGCTTCAGAATTTTCTTGCGTGCGCAGAGTTAATATAGACGTTTATGAATATGAATTCGAGAGAGGTTCGAATAACTCTCAAAATTCTATAGAAAATTTCTATGAGTTGCTTAAAGTGTTTCATAATGCAAGGTGTTTCACACTGCCTTTCAAAGCAATAAAGGTATCGAAAAGTTCTTTCCTCTCTTCCTTTTCATTCCCTTTCTTTTATTCTCAGCAACATTTTCGTAATTAA

mRNA sequence

ATGAATCTTTTACCCACTGTCAAGTCTGCTTCAGAATTTTCTTGCGTGCGCAGAGTTAATATAGACGTTTATGAATATGAATTCGAGAGAGGTTCGAATAACTCTCAAAATTCTATAGAAAATTTCTATGAGTTGCTTAAAGTGTTTCATAATGCAAGGTGTTTCACACTGCCTTTCAAAGCAATAAAGCAACATTTTCGTAATTAA

Coding sequence (CDS)

ATGAATCTTTTACCCACTGTCAAGTCTGCTTCAGAATTTTCTTGCGTGCGCAGAGTTAATATAGACGTTTATGAATATGAATTCGAGAGAGGTTCGAATAACTCTCAAAATTCTATAGAAAATTTCTATGAGTTGCTTAAAGTGTTTCATAATGCAAGGTGTTTCACACTGCCTTTCAAAGCAATAAAGCAACATTTTCGTAATTAA

Protein sequence

MNLLPTVKSASEFSCVRRVNIDVYEYEFERGSNNSQNSIENFYELLKVFHNARCFTLPFKAIKQHFRN
Homology
BLAST of Lcy12g001540 vs. ExPASy TrEMBL
Match: A0A6J1CKA9 (LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like OS=Momordica charantia OX=3673 GN=LOC111012077 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.1e-09
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 0

Query: 2   NLLPTVKSASEFSCVRRVNIDVYEYEFERGSNN-SQNSIENFYELLKVFHNARCFTLPFK 61
           N+LPTV SA EFSC+++VNI+V+ Y+F  G+    QN I  F EL +VFHNAR F LP  
Sbjct: 354 NMLPTVNSALEFSCIQKVNIEVHNYQFSSGNGYFCQNKIAAFSELFRVFHNARSFILPLT 413

Query: 62  AIKQ 65
             +Q
Sbjct: 414 PTQQ 417

BLAST of Lcy12g001540 vs. ExPASy TrEMBL
Match: A0A5A7TCF1 (F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00570 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.7e-05
Identity = 26/64 (40.62%), Postives = 41/64 (64.06%), Query Frame = 0

Query: 1   MNLLPTVKSASEFSCVRRVNIDVYEYEFERGSNNSQNSIENFYELLKVFHNARCFTLPFK 60
           +N+LP ++S SEFSC+++V+I + +  F    + +Q     F +LL V HNA  FTLP K
Sbjct: 256 VNVLPVLESDSEFSCIQKVDIQLKDSVFTTDGSQTQELKSKFIDLLSVLHNASSFTLPMK 315

Query: 61  AIKQ 65
           A ++
Sbjct: 316 ATQE 319

BLAST of Lcy12g001540 vs. ExPASy TrEMBL
Match: A0A1S3CB41 (F-box/LRR-repeat protein At3g26922-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498689 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.9e-05
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 0

Query: 1   MNLLPTVKSASEFSCVRRVNIDVYEYEFERGSNNSQNSIENFYELLKVFHNARCFTLPFK 60
           +N+LP ++S SEFSC+++V+I + +  F    + +Q     F +LL V HNA  FTLP K
Sbjct: 256 VNVLPVLESDSEFSCIQKVDIQLKDSVFTTDGSQTQELKSKFIDLLSVLHNASSFTLPMK 315

Query: 61  A 62
           A
Sbjct: 316 A 316

BLAST of Lcy12g001540 vs. ExPASy TrEMBL
Match: A0A0A0KSW6 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650430 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-04
Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 0

Query: 1   MNLLPTVKSASEFSCVRRVNIDVYEYEFERGSNNSQNSIENFYELLKVFHNARCFTLPFK 60
           +N+LPTVKS  EFS + +V+I +    FER   NS+ S   F ELL VFH AR FTLP K
Sbjct: 257 VNVLPTVKSDYEFSRIDKVDIQLVS-RFERDDRNSRKS--KFRELLSVFHMARSFTLPLK 316

Query: 61  AIKQ 65
              Q
Sbjct: 317 LTMQ 317

BLAST of Lcy12g001540 vs. NCBI nr
Match: XP_022141791.1 (LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like [Momordica charantia])

HSP 1 Score: 70.1 bits (170), Expect = 8.4e-09
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 0

Query: 2   NLLPTVKSASEFSCVRRVNIDVYEYEFERGSNN-SQNSIENFYELLKVFHNARCFTLPFK 61
           N+LPTV SA EFSC+++VNI+V+ Y+F  G+    QN I  F EL +VFHNAR F LP  
Sbjct: 354 NMLPTVNSALEFSCIQKVNIEVHNYQFSSGNGYFCQNKIAAFSELFRVFHNARSFILPLT 413

Query: 62  AIKQ 65
             +Q
Sbjct: 414 PTQQ 417

BLAST of Lcy12g001540 vs. NCBI nr
Match: XP_038890214.1 (F-box/LRR-repeat protein At3g26922-like [Benincasa hispida])

HSP 1 Score: 68.9 bits (167), Expect = 1.9e-08
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 0

Query: 1   MNLLPTVKSASEFSCVRRVNIDVYEYEFERGSNNSQNSIENFYELLKVFHNARCFTLPFK 60
           +N+LP VKS SEFSC+ +V+I + +  FER  + +Q    NF ELL VFHNAR FTLP K
Sbjct: 246 INVLPIVKSDSEFSCIHKVDIQLKDSIFERVGSQTQKLKSNFRELLSVFHNARSFTLPLK 305

Query: 61  A 62
           A
Sbjct: 306 A 306

BLAST of Lcy12g001540 vs. NCBI nr
Match: XP_038890213.1 (uncharacterized protein LOC120079853 [Benincasa hispida])

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 0

Query: 1   MNLLPTVKSASEFSCVRRVNIDVYEYEFER--GSNNSQNSIENFYELLKVFHNARCFTLP 60
           +N+LP +KS SEF C+ +VNI + +  FER     N Q    NF ELL+VFHNAR FTLP
Sbjct: 590 INVLPILKSDSEFLCIHKVNIQLEDSVFEREYSGPNKQKFNSNFGELLRVFHNARSFTLP 649

Query: 61  FKA 62
            KA
Sbjct: 650 LKA 652

BLAST of Lcy12g001540 vs. NCBI nr
Match: KAA0039267.1 (F-box/LRR-repeat protein [Cucumis melo var. makuwa] >TYK00453.1 F-box/LRR-repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 9.6e-05
Identity = 26/64 (40.62%), Postives = 41/64 (64.06%), Query Frame = 0

Query: 1   MNLLPTVKSASEFSCVRRVNIDVYEYEFERGSNNSQNSIENFYELLKVFHNARCFTLPFK 60
           +N+LP ++S SEFSC+++V+I + +  F    + +Q     F +LL V HNA  FTLP K
Sbjct: 256 VNVLPVLESDSEFSCIQKVDIQLKDSVFTTDGSQTQELKSKFIDLLSVLHNASSFTLPMK 315

Query: 61  AIKQ 65
           A ++
Sbjct: 316 ATQE 319

BLAST of Lcy12g001540 vs. NCBI nr
Match: XP_008459617.1 (PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo])

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-04
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 0

Query: 1   MNLLPTVKSASEFSCVRRVNIDVYEYEFERGSNNSQNSIENFYELLKVFHNARCFTLPFK 60
           +N+LP ++S SEFSC+++V+I + +  F    + +Q     F +LL V HNA  FTLP K
Sbjct: 256 VNVLPVLESDSEFSCIQKVDIQLKDSVFTTDGSQTQELKSKFIDLLSVLHNASSFTLPMK 315

Query: 61  A 62
           A
Sbjct: 316 A 316

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CKA94.1e-0953.13LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like OS=Momordica ch... [more]
A0A5A7TCF14.7e-0540.63F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3CB417.9e-0542.62F-box/LRR-repeat protein At3g26922-like isoform X1 OS=Cucumis melo OX=3656 GN=LO... [more]
A0A0A0KSW61.0e-0451.56F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650430 PE=4 ... [more]
Match NameE-valueIdentityDescription
XP_022141791.18.4e-0953.13LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like [Momordica char... [more]
XP_038890214.11.9e-0855.74F-box/LRR-repeat protein At3g26922-like [Benincasa hispida][more]
XP_038890213.12.7e-0753.97uncharacterized protein LOC120079853 [Benincasa hispida][more]
KAA0039267.19.6e-0540.63F-box/LRR-repeat protein [Cucumis melo var. makuwa] >TYK00453.1 F-box/LRR-repeat... [more]
XP_008459617.11.6e-0442.62PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g001540.1Lcy12g001540.1mRNA