Lcy11g020980 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g020980
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr11: 48709598 .. 48710305 (-)
RNA-Seq Expression	Lcy11g020980
Synteny	Lcy11g020980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATTTCATTTCAGACAACCCTTCCATTTTTATTTTATTAAATCAGTCTCCGATCGAGCATCTTCCAGTTCACCTTCCCCGCCCAAAAAAAAAAGAAAGAAAGAAAGAAAGTCTCCTTCGACCGCCGAATAATAAATGGAGCCTATTTCGTATCAGAGGATCAGGCGGCGCTCCCATGGATCTGCACGCTGCCGAGGCTTCCGCCTCAACTCGAGAAGATTCTCCGTCTCGAAGCTGCGGGCAAAGTTCGCGTGGCTATTGAGGATCTTAAATACATGGCGCCGCGGGAGATCATCAAAGCCAAAGGCGGAGTCCCCGAGGTGCGCCGATCGAGCCGAGTGCAGGTTGAGGTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGAGGTCGTCTGTTTCGATTAATGGAGCGCCGCTTCAACCCAGGATCGAATTCCGCGATCCTTCTGCCTCTAACTAATATAATTTCTTTTCTTTTATTTTCTTTTACTTTCTTAATTTATTCACACAAAAGTCAAAACCAAACGCCTGCACCTGCACCTGCACATAGCTTCATATTTGTGGTTTATTTTGTTTGTAACATAGAAAACACGGCCGGCAATCCCATATGTTATTGGAGATGGTGCAGATATCTTCTGCAAAACCAAATACAATTATTTTCCTCCAGTTTTTTTACCTC

mRNA sequence

CCATTTCATTTCAGACAACCCTTCCATTTTTATTTTATTAAATCAGTCTCCGATCGAGCATCTTCCAGTTCACCTTCCCCGCCCAAAAAAAAAAGAAAGAAAGAAAGAAAGTCTCCTTCGACCGCCGAATAATAAATGGAGCCTATTTCGTATCAGAGGATCAGGCGGCGCTCCCATGGATCTGCACGCTGCCGAGGCTTCCGCCTCAACTCGAGAAGATTCTCCGTCTCGAAGCTGCGGGCAAAGTTCGCGTGGCTATTGAGGATCTTAAATACATGGCGCCGCGGGAGATCATCAAAGCCAAAGGCGGAGTCCCCGAGGTGCGCCGATCGAGCCGAGTGCAGGTTGAGGTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGAGGTCGTCTGTTTCGATTAATGGAGCGCCGCTTCAACCCAGGATCGAATTCCGCGATCCTTCTGCCTCTAACTAATATAATTTCTTTTCTTTTATTTTCTTTTACTTTCTTAATTTATTCACACAAAAGTCAAAACCAAACGCCTGCACCTGCACCTGCACATAGCTTCATATTTGTGGTTTATTTTGTTTGTAACATAGAAAACACGGCCGGCAATCCCATATGTTATTGGAGATGGTGCAGATATCTTCTGCAAAACCAAATACAATTATTTTCCTCCAGTTTTTTTACCTC

Coding sequence (CDS)

ATGGAGCCTATTTCGTATCAGAGGATCAGGCGGCGCTCCCATGGATCTGCACGCTGCCGAGGCTTCCGCCTCAACTCGAGAAGATTCTCCGTCTCGAAGCTGCGGGCAAAGTTCGCGTGGCTATTGAGGATCTTAAATACATGGCGCCGCGGGAGATCATCAAAGCCAAAGGCGGAGTCCCCGAGGTGCGCCGATCGAGCCGAGTGCAGGTTGAGGTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGAGGTCGTCTGTTTCGATTAATGGAGCGCCGCTTCAACCCAGGATCGAATTCCGCGATCCTTCTGCCTCTAACTAA

Protein sequence

MEPISYQRIRRRSHGSARCRGFRLNSRRFSVSKLRAKFAWLLRILNTWRRGRSSKPKAESPRCADRAECRLRSFRRSNSFYAEAIADCLDFIKRSSVSINGAPLQPRIEFRDPSASN

Homology

[Close]

BLAST of Lcy11g020980 vs. ExPASy TrEMBL
Match: A0A6J1E0I4 (uncharacterized protein LOC111024807 OS=Momordica charantia OX=3673 GN=LOC111024807 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.1e-25
Identity = 79/125 (63.20%), Postives = 87/125 (69.60%), Query Frame = 0


Query: 1   MEPISYQRI-----RRRSHGSARCRGFRLNSRRFSVSKLRAKFAWLLRILNTWRRG---- 60
           MEPISY+RI     RRRS  +   RGFRLNSRRFSVS+LRAKF  LLRILN WRR     
Sbjct: 78  MEPISYERIIGKGSRRRSQSA---RGFRLNSRRFSVSRLRAKFMCLLRILNKWRRSIKKM 137

Query: 61  -RSSKPKAESPRCADRAECRLRSFRRSNSFYAEAIADCLDFIK-RSSVSINGAPLQPRIE 115
            RS    AE P C D    RLRSFRRSNSFYAEA+ADCLDFIK  +S S++ A  QP +E
Sbjct: 138 RRSKAEVAEFPWCTD----RLRSFRRSNSFYAEAMADCLDFIKTNTSSSLSVAVDQPMVE 195

[Close]

BLAST of Lcy11g020980 vs. ExPASy TrEMBL
Match: A0A5A7UC85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00100 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.7e-23
Identity = 71/111 (63.96%), Postives = 78/111 (70.27%), Query Frame = 0


Query: 1   MEPISYQRIRRRSHGSARCRGFRLNSRRFSVSKLRAKFAWLLRILNTWR--------RGR 60
           M+PI+Y+RIRRR   S  CRGFRL SRR SVSKL++KF WLLRILN WR        RGR
Sbjct: 1   MDPITYERIRRRPRRS--CRGFRLTSRRLSVSKLQSKFGWLLRILNWWRRSIVDIKKRGR 60

Query: 61  SSKPKAESPRCADRAECRLRSFRRSNSFYAEAIADCLDFIKRSSVSINGAP 104
           SSK  + S   A     RLRSFRRSNSFYAEAIADCLDFIK SS S +  P
Sbjct: 61  SSKGSSNSGAQA----TRLRSFRRSNSFYAEAIADCLDFIKTSSSSFSTPP 105

[Close]

BLAST of Lcy11g020980 vs. ExPASy TrEMBL
Match: A0A0A0L3I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000130 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-21
Identity = 66/104 (63.46%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 1  MEPISYQRIRRRSHGSARCRGFRLNSRRFSVSKLRAKFAWLLRILNTWRR--------GR 60
          M+PI+Y+RI RR   S  CRGFRL SRR SVSKLR+KF WLLRILN WRR        G 
Sbjct: 1  MDPITYERITRRQRRS--CRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGT 60

Query: 61 SSKPKAESPRCADRAECRLRSFRRSNSFYAEAIADCLDFIKRSS 97
          SSK  + S   A     +LRSFRRSNSFYAEAIADCLDFIK +S
Sbjct: 61 SSKGSSNSAAQA----AKLRSFRRSNSFYAEAIADCLDFIKTTS 98

[Close]

BLAST of Lcy11g020980 vs. ExPASy TrEMBL
Match: A0A6S7M974 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS12429 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.5e-16
Identity = 62/120 (51.67%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 1   MEPISYQRIRRRSHGSARCRGFRLNSRRFSVSKLRAKFAWLLRIL-NTWRRGRSSKPKAE 60
           M  +SY R+RRRS+G+   RGFRLNS+RFSV +LRAKF    RIL  TWR    SK    
Sbjct: 1   MVHLSYTRVRRRSYGT---RGFRLNSKRFSVQRLRAKFFNFFRILMRTWRSSSYSKRTTM 60

Query: 61  S---------------PRCADRAE-CRLRSFRRSNSFYAEAIADCLDFIKRSSVSINGAP 104
           S                  A R + CRL+SF RSNSFY+EAI DCL+FIKRSSVS++  P
Sbjct: 61  SCSNLSYGSSRRDFVANENASRVDVCRLKSFTRSNSFYSEAIEDCLEFIKRSSVSLDEKP 117

[Close]

BLAST of Lcy11g020980 vs. ExPASy TrEMBL
Match: A0A2J6L657 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_2X74220 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.9e-16
Identity = 61/120 (50.83%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 1   MEPISYQRIRRRSHGSARCRGFRLNSRRFSVSKLRAKFAWLLRIL-NTWRRGRSSKPKAE 60
           M  +SY R+RRRS+G+   +GFRLNS+RFSV +LRAKF    RIL  TWR    SK    
Sbjct: 1   MVHLSYTRVRRRSYGT---KGFRLNSKRFSVQRLRAKFFNFFRILMRTWRSSSYSKRTTM 60

Query: 61  S---------------PRCADRAE-CRLRSFRRSNSFYAEAIADCLDFIKRSSVSINGAP 104
           S                  A R + CRL+SF RSNSFY+EAI DCL+FIKRSSVS++  P
Sbjct: 61  SCSNLSYGSSRRDFVAKENASRVDVCRLKSFTRSNSFYSEAIEDCLEFIKRSSVSLDEKP 117

[Close]

BLAST of Lcy11g020980 vs. NCBI nr
Match: KAG6596289.1 (hypothetical protein SDJN03_09469, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.6 bits (449), Expect = 6.4e-41
Identity = 97/133 (72.93%), Postives = 102/133 (76.69%), Query Frame = 0


Query: 1   MEPISYQRIRRRSHGSARCRGFRLNSRRFSVSKLRAKFAWLLRILNTWRR---------- 60
           MEPI+YQRIRRRSHG ARCRGF L+SRRFSVSKLRAKF WLLRILN WRR          
Sbjct: 76  MEPITYQRIRRRSHGFARCRGFHLHSRRFSVSKLRAKFDWLLRILNRWRRSYSWSIKINK 135

Query: 61  ----GR---SSKPKAESPRCADRAECRLRSFRRSNSFYAEAIADCLDFIKRSSVSINGAP 117
               GR   S+   AE PRC DR ECRLRSFRRSNSFYAEAIADCLDFIKRSSVS + A 
Sbjct: 136 ARRGGRSKASATASAEFPRCVDRGECRLRSFRRSNSFYAEAIADCLDFIKRSSVSSDRAS 195

[Close]

BLAST of Lcy11g020980 vs. NCBI nr
Match: KAG7027838.1 (hypothetical protein SDJN02_09015, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.6 bits (449), Expect = 6.4e-41
Identity = 97/133 (72.93%), Postives = 102/133 (76.69%), Query Frame = 0


Query: 1   MEPISYQRIRRRSHGSARCRGFRLNSRRFSVSKLRAKFAWLLRILNTWRR---------- 60
           MEPI+YQRIRRRSHG ARCRGF L+SRRFSVSKLRAKF WLLRILN WRR          
Sbjct: 1   MEPITYQRIRRRSHGFARCRGFHLHSRRFSVSKLRAKFDWLLRILNRWRRSYSWSIKINK 60

Query: 61  ----GR---SSKPKAESPRCADRAECRLRSFRRSNSFYAEAIADCLDFIKRSSVSINGAP 117
               GR   S+   AE PRC DR ECRLRSFRRSNSFYAEAIADCLDFIKRSSVS + A 
Sbjct: 61  ARRGGRSKASATASAEFPRCVDRGECRLRSFRRSNSFYAEAIADCLDFIKRSSVSSDRAS 120

[Close]

BLAST of Lcy11g020980 vs. NCBI nr
Match: XP_022158286.1 (uncharacterized protein LOC111024807 [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 8.4e-25
Identity = 79/125 (63.20%), Postives = 87/125 (69.60%), Query Frame = 0


Query: 1   MEPISYQRI-----RRRSHGSARCRGFRLNSRRFSVSKLRAKFAWLLRILNTWRRG---- 60
           MEPISY+RI     RRRS  +   RGFRLNSRRFSVS+LRAKF  LLRILN WRR     
Sbjct: 78  MEPISYERIIGKGSRRRSQSA---RGFRLNSRRFSVSRLRAKFMCLLRILNKWRRSIKKM 137

Query: 61  -RSSKPKAESPRCADRAECRLRSFRRSNSFYAEAIADCLDFIK-RSSVSINGAPLQPRIE 115
            RS    AE P C D    RLRSFRRSNSFYAEA+ADCLDFIK  +S S++ A  QP +E
Sbjct: 138 RRSKAEVAEFPWCTD----RLRSFRRSNSFYAEAMADCLDFIKTNTSSSLSVAVDQPMVE 195

[Close]

BLAST of Lcy11g020980 vs. NCBI nr
Match: KAA0052904.1 (hypothetical protein E6C27_scaffold344G00100 [Cucumis melo var. makuwa] >TYK11358.1 hypothetical protein E5676_scaffold139G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 3.5e-23
Identity = 71/111 (63.96%), Postives = 78/111 (70.27%), Query Frame = 0


Query: 1   MEPISYQRIRRRSHGSARCRGFRLNSRRFSVSKLRAKFAWLLRILNTWR--------RGR 60
           M+PI+Y+RIRRR   S  CRGFRL SRR SVSKL++KF WLLRILN WR        RGR
Sbjct: 1   MDPITYERIRRRPRRS--CRGFRLTSRRLSVSKLQSKFGWLLRILNWWRRSIVDIKKRGR 60

Query: 61  SSKPKAESPRCADRAECRLRSFRRSNSFYAEAIADCLDFIKRSSVSINGAP 104
           SSK  + S   A     RLRSFRRSNSFYAEAIADCLDFIK SS S +  P
Sbjct: 61  SSKGSSNSGAQA----TRLRSFRRSNSFYAEAIADCLDFIKTSSSSFSTPP 105

[Close]

BLAST of Lcy11g020980 vs. NCBI nr
Match: KAE8637405.1 (hypothetical protein CSA_023382 [Cucumis sativus] >KGN55589.1 hypothetical protein Csa_011775 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 3.3e-21
Identity = 66/104 (63.46%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 1  MEPISYQRIRRRSHGSARCRGFRLNSRRFSVSKLRAKFAWLLRILNTWRR--------GR 60
          M+PI+Y+RI RR   S  CRGFRL SRR SVSKLR+KF WLLRILN WRR        G 
Sbjct: 1  MDPITYERITRRQRRS--CRGFRLTSRRLSVSKLRSKFGWLLRILNRWRRSIVEIKKSGT 60

Query: 61 SSKPKAESPRCADRAECRLRSFRRSNSFYAEAIADCLDFIKRSS 97
          SSK  + S   A     +LRSFRRSNSFYAEAIADCLDFIK +S
Sbjct: 61 SSKGSSNSAAQA----AKLRSFRRSNSFYAEAIADCLDFIKTTS 98

The following BLAST results are available for this feature:

BLAST of Lcy11g020980 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g020980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E0I4	4.1e-25	63.20	uncharacterized protein LOC111024807 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5A7UC85	1.7e-23	63.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L3I7	1.6e-21	63.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000130 PE=4 SV=1	[more]
A0A6S7M974	3.5e-16	51.67	Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS12429 PE=4 SV=1	[more]
A0A2J6L657	5.9e-16	50.83	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_2X74220 PE=4 SV=1	[more]

BLAST of Lcy11g020980 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596289.1	6.4e-41	72.93	hypothetical protein SDJN03_09469, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7027838.1	6.4e-41	72.93	hypothetical protein SDJN02_09015, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022158286.1	8.4e-25	63.20	uncharacterized protein LOC111024807 [Momordica charantia]	[more]
KAA0052904.1	3.5e-23	63.96	hypothetical protein E6C27_scaffold344G00100 [Cucumis melo var. makuwa] >TYK1135...	[more]
KAE8637405.1	3.3e-21	63.46	hypothetical protein CSA_023382 [Cucumis sativus] >KGN55589.1 hypothetical prote...	[more]

BLAST of Lcy11g020980 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34996:SF3	OS06G0327400 PROTEIN	coord: 55..107
None	No IPR available	PANTHER	PTHR34996	OS06G0327400 PROTEIN	coord: 55..107
None	No IPR available	PANTHER	PTHR34996	OS06G0327400 PROTEIN	coord: 2..50
None	No IPR available	PANTHER	PTHR34996:SF3	OS06G0327400 PROTEIN	coord: 2..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g020980.1	Lcy11g020980.1	mRNA