Lcy11g020610 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g020610
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr11: 48335009 .. 48335314 (+)
RNA-Seq Expression	Lcy11g020610
Synteny	Lcy11g020610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACTGACCTGGACTATCGGTAAGAGGAGGCCCATCGTCGTAAACGTAGCCGACGAGACGTCCACATGCATTGCACTTGATCTTGGTGCGTTTCCGCTGGATTCCCCAATAGTTGACGGTCTCGAAGAACGGTCGGAGCTTGTCCTCCTTCTCGAACCTGAATTTCGTGGAGTCGATCAACGAAAACGAAAGGGTGCCCTTGTTGCCGGCCTCGAAGTAGAAATCCGGCGGGAAGAGATGAGTGGAATTCAGTTTCAGATTTGCTCCGCATTCAGTACAGGAATAGATGGAAGCCATTGTTGA

mRNA sequence

ATGGTACTGACCTGGACTATCGGTAAGAGGAGGCCCATCGTCGTAAACGTAGCCGACGAGACGTCCACATGCATTGCACTTGATCTTGGTGCGTTTCCGCTGGATTCCCCAATAGTTGACGGTCTCGAAGAACGGTCGGAGCTTGTCCTCCTTCTCGAACCTGAATTTCGTGGAGTCGATCAACGAAAACGAAAGGGTGCCCTTGTTGCCGGCCTCGAAGTAGAAATCCGGCGGGAAGAGATGAGTGGAATTCAGTTTCAGATTTGCTCCGCATTCAGTACAGGAATAGATGGAAGCCATTGTTGA

Coding sequence (CDS)

ATGGTACTGACCTGGACTATCGGTAAGAGGAGGCCCATCGTCGTAAACGTAGCCGACGAGACGTCCACATGCATTGCACTTGATCTTGGTGCGTTTCCGCTGGATTCCCCAATAGTTGACGGTCTCGAAGAACGGTCGGAGCTTGTCCTCCTTCTCGAACCTGAATTTCGTGGAGTCGATCAACGAAAACGAAAGGGTGCCCTTGTTGCCGGCCTCGAAGTAGAAATCCGGCGGGAAGAGATGAGTGGAATTCAGTTTCAGATTTGCTCCGCATTCAGTACAGGAATAGATGGAAGCCATTGTTGA

Protein sequence

MVLTWTIGKRRPIVVNVADETSTCIALDLGAFPLDSPIVDGLEERSELVLLLEPEFRGVDQRKRKGALVAGLEVEIRREEMSGIQFQICSAFSTGIDGSHC

Homology

[Close]

BLAST of Lcy11g020610 vs. ExPASy TrEMBL
Match: A5CB28 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034433 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.4e-21
Identity = 54/97 (55.67%), Postives = 74/97 (76.29%), Query Frame = 0


Query: 1  MVLTWTIGKRRPIVVNVADETSTCIALDLGAFPLDSPIVDGLEERSELVLLLEPEFRGVD 60
          M LT T+G+RR I+V+VA+ET+T IALDLG  PLDSP++ GLE+  +LVL LE E  GVD
Sbjct: 1  MELTGTVGERRTIIVDVANETATAIALDLGPLPLDSPVIQGLEKGPDLVLFLESELXGVD 60

Query: 61 QRKRKGALVAGLEVEIRREEMSGIQFQICSAFSTGID 98
            + +GA VAG+EVE+R EE+ G++ ++ SAF T +D
Sbjct: 61 ACEGEGAFVAGVEVEVRWEEVGGVKVEVGSAFPTAVD 97

[Close]

BLAST of Lcy11g020610 vs. ExPASy TrEMBL
Match: A0A6A2WCL8 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117012pilonHSYRG00019 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.5e-12
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 1   MVLTWTIGKRRPIVVNVADETSTCIALDLGAFPLDSPIVDGLEERSELVLLLEPEFRGVD 60
           M LT TI +RR I++N+  +    I LDLG+ P+ SP+++GLEER ELVL LE E   +D
Sbjct: 32  MPLTETICERRAIIINMTHKFPATITLDLGSVPVGSPVINGLEERPELVLFLEVEVGLID 91

Query: 61  QRKRKGALVAGLEVEIRRE 80
             +RKGALV+ LEVEI RE
Sbjct: 92  HGERKGALVSRLEVEIWRE 110

[Close]

BLAST of Lcy11g020610 vs. ExPASy TrEMBL
Match: A0A498HVY7 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_029681 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 26  ALDLGAFPLDSPIVDGLEERSELVLLLEPEFRGVDQRKRKGALVAGLEVEIRREEMSGIQ 85
           ALDL   PLD P+V  LEERS+LVLL+EPE   VD+RKR  +LV+GLE E+RR E+   +
Sbjct: 166 ALDLRPRPLDPPVVSSLEERSDLVLLVEPELGCVDRRKRHRSLVSGLEEEVRRIEIRSGK 225

Query: 86  FQICSAFSTGID 98
            Q+ SA   G+D
Sbjct: 226 VQVGSALRAGVD 237

[Close]

BLAST of Lcy11g020610 vs. NCBI nr
Match: CAN82016.1 (hypothetical protein VITISV_034433 [Vitis vinifera])

HSP 1 Score: 111.3 bits (277), Expect = 4.9e-21
Identity = 54/97 (55.67%), Postives = 74/97 (76.29%), Query Frame = 0


Query: 1  MVLTWTIGKRRPIVVNVADETSTCIALDLGAFPLDSPIVDGLEERSELVLLLEPEFRGVD 60
          M LT T+G+RR I+V+VA+ET+T IALDLG  PLDSP++ GLE+  +LVL LE E  GVD
Sbjct: 1  MELTGTVGERRTIIVDVANETATAIALDLGPLPLDSPVIQGLEKGPDLVLFLESELXGVD 60

Query: 61 QRKRKGALVAGLEVEIRREEMSGIQFQICSAFSTGID 98
            + +GA VAG+EVE+R EE+ G++ ++ SAF T +D
Sbjct: 61 ACEGEGAFVAGVEVEVRWEEVGGVKVEVGSAFPTAVD 97

[Close]

BLAST of Lcy11g020610 vs. NCBI nr
Match: KAG5123654.1 (hypothetical protein JHK82_030391 [Glycine max])

HSP 1 Score: 109.0 bits (271), Expect = 2.4e-20
Identity = 58/98 (59.18%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 3   LTWTIGKRRPIVVNVADETSTCIALDLGAFPLDSPIVDGLEERSELVLLLEPEFRGVDQR 62
           LT TIGKR  IV++VA ET T +ALDLG  PLDSP+VDG EE ++LVLLLE E  GV   
Sbjct: 244 LTGTIGKRWTIVIDVAKETVTGVALDLGPLPLDSPVVDGFEEGAKLVLLLELELGGVHDG 303

Query: 63  KRKGALVAGLEVEIRREEMSGIQFQICSAFSTGIDGSH 101
           +  GALVAG EVE+ R  MSG+Q Q+ SA  T + G H
Sbjct: 304 EGDGALVAGFEVEVWRVGMSGVQIQVGSALRTAVHGGH 341

[Close]

BLAST of Lcy11g020610 vs. NCBI nr
Match: KAG4988045.1 (hypothetical protein JHK85_031028 [Glycine max] >KAG5145072.1 hypothetical protein JHK84_030615 [Glycine max])

HSP 1 Score: 107.1 bits (266), Expect = 9.2e-20
Identity = 57/98 (58.16%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 3   LTWTIGKRRPIVVNVADETSTCIALDLGAFPLDSPIVDGLEERSELVLLLEPEFRGVDQR 62
           LT TIGKR  IV++VA ET T +ALDLG  PLDSP+VDG EE ++LVLLLE E  GV   
Sbjct: 244 LTGTIGKRWTIVIDVAKETVTGVALDLGPLPLDSPVVDGFEEGAKLVLLLELELGGVRDG 303

Query: 63  KRKGALVAGLEVEIRREEMSGIQFQICSAFSTGIDGSH 101
           +  GALVAG EVE+ R  MSG++ Q+ SA  T + G H
Sbjct: 304 EGDGALVAGFEVEVWRVGMSGVKIQVGSALRTAVHGGH 341

[Close]

BLAST of Lcy11g020610 vs. NCBI nr
Match: KHN41865.1 (L-ascorbate peroxidase 3, peroxisomal [Glycine soja])

HSP 1 Score: 107.1 bits (266), Expect = 9.2e-20
Identity = 57/98 (58.16%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 3   LTWTIGKRRPIVVNVADETSTCIALDLGAFPLDSPIVDGLEERSELVLLLEPEFRGVDQR 62
           LT TIGKR  IV++VA ET T +ALDLG  PLDSP+VDG EE ++LVLLLE E  GV   
Sbjct: 223 LTGTIGKRWTIVIDVAKETVTGVALDLGPLPLDSPVVDGFEEGAKLVLLLELELGGVRDG 282

Query: 63  KRKGALVAGLEVEIRREEMSGIQFQICSAFSTGIDGSH 101
           +  GALVAG EVE+ R  MSG++ Q+ SA  T + G H
Sbjct: 283 EGDGALVAGFEVEVWRVGMSGVKIQVGSALRTAVHGGH 320

[Close]

BLAST of Lcy11g020610 vs. NCBI nr
Match: KAG4993660.1 (hypothetical protein JHK86_030487 [Glycine max])

HSP 1 Score: 106.7 bits (265), Expect = 1.2e-19
Identity = 57/98 (58.16%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 3   LTWTIGKRRPIVVNVADETSTCIALDLGAFPLDSPIVDGLEERSELVLLLEPEFRGVDQR 62
           LT TIGKR  IV++VA ET T +ALDLG  PLDSP+VDG EE ++LVLLLE E  GV   
Sbjct: 223 LTGTIGKRWTIVIDVAKETVTGVALDLGPLPLDSPVVDGFEEGAKLVLLLELELGGVHGG 282

Query: 63  KRKGALVAGLEVEIRREEMSGIQFQICSAFSTGIDGSH 101
           +  GALVAG EVE+ R  MSG++ Q+ SA  T + G H
Sbjct: 283 EGDGALVAGFEVEVWRVGMSGVKIQVGSALRTAVHGGH 320

The following BLAST results are available for this feature:

BLAST of Lcy11g020610 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g020610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A5CB28	2.4e-21	55.67	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034433 PE=4 SV=1	[more]
A0A6A2WCL8	4.5e-12	54.43	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117012pilon...	[more]
A0A498HVY7	1.1e-10	55.56	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_029681 PE=4 SV=1	[more]

BLAST of Lcy11g020610 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN82016.1	4.9e-21	55.67	hypothetical protein VITISV_034433 [Vitis vinifera]	[more]
KAG5123654.1	2.4e-20	59.18	hypothetical protein JHK82_030391 [Glycine max]	[more]
KAG4988045.1	9.2e-20	58.16	hypothetical protein JHK85_031028 [Glycine max] >KAG5145072.1 hypothetical prote...	[more]
KHN41865.1	9.2e-20	58.16	L-ascorbate peroxidase 3, peroxisomal [Glycine soja]	[more]
KAG4993660.1	1.2e-19	58.16	hypothetical protein JHK86_030487 [Glycine max]	[more]

BLAST of Lcy11g020610 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g020610.1	Lcy11g020610.1	mRNA