Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAGAGGAAATCGCCAATGGTGTTCCGTCTCAAGAAGACATGGTCCAAGCTCACTGCATTTCTCCGCCCCTCCCTTGCTCGCCGGAGACCTTCCCGCCGGCTGCGGTCATTCGTTCCCGACGACCGGACGCTAGGGCTGCGGACTTTCTTGGAAGATGAGACAATTGTCCAGAATTCTACTGTGAGAAGGCTTGAACGTGTTTCGAGTTTGAACTATGGAAGAAATTCCGAGGACGACGTCGATACGCGAGCTCAGGTATTCATCGACAATTTTCGCCGTCATTTGTTTTTAGAAAGACAAATCTCTTTGCGATTGAGGTACTGTAGAACTAATAGCTCCGAATCGGAGTATGATGAGAGATCGCCATCGCCGCCGTGTTCGTCGATTTGA
mRNA sequence
ATGGCCGAGAGGAAATCGCCAATGGTGTTCCGTCTCAAGAAGACATGGTCCAAGCTCACTGCATTTCTCCGCCCCTCCCTTGCTCGCCGGAGACCTTCCCGCCGGCTGCGGTCATTCGTTCCCGACGACCGGACGCTAGGGCTGCGGACTTTCTTGGAAGATGAGACAATTGTCCAGAATTCTACTGTGAGAAGGCTTGAACGTGTTTCGAGTTTGAACTATGGAAGAAATTCCGAGGACGACGTCGATACGCGAGCTCAGGTATTCATCGACAATTTTCGCCGTCATTTGTTTTTAGAAAGACAAATCTCTTTGCGATTGAGGTACTGTAGAACTAATAGCTCCGAATCGGAGTATGATGAGAGATCGCCATCGCCGCCGTGTTCGTCGATTTGA
Coding sequence (CDS)
ATGGCCGAGAGGAAATCGCCAATGGTGTTCCGTCTCAAGAAGACATGGTCCAAGCTCACTGCATTTCTCCGCCCCTCCCTTGCTCGCCGGAGACCTTCCCGCCGGCTGCGGTCATTCGTTCCCGACGACCGGACGCTAGGGCTGCGGACTTTCTTGGAAGATGAGACAATTGTCCAGAATTCTACTGTGAGAAGGCTTGAACGTGTTTCGAGTTTGAACTATGGAAGAAATTCCGAGGACGACGTCGATACGCGAGCTCAGGTATTCATCGACAATTTTCGCCGTCATTTGTTTTTAGAAAGACAAATCTCTTTGCGATTGAGGTACTGTAGAACTAATAGCTCCGAATCGGAGTATGATGAGAGATCGCCATCGCCGCCGTGTTCGTCGATTTGA
Protein sequence
MAERKSPMVFRLKKTWSKLTAFLRPSLARRRPSRRLRSFVPDDRTLGLRTFLEDETIVQNSTVRRLERVSSLNYGRNSEDDVDTRAQVFIDNFRRHLFLERQISLRLRYCRTNSSESEYDERSPSPPCSSI
Homology
BLAST of Lcy11g020090 vs. ExPASy TrEMBL
Match:
A0A6J1CW64 (uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014780 PE=4 SV=1)
HSP 1 Score: 152.1 bits (383), Expect = 1.6e-33
Identity = 90/136 (66.18%), Postives = 106/136 (77.94%), Query Frame = 0
Query: 1 MAERKSPMVFRLKKTWSKLTAFLRPS----LARRRPSRRLRSFVPDDRTLGLRTFLEDET 60
MAE+KSP++ RLKK K+TA LR + LARRRPS RLRSF DRT+GLR+FLEDE
Sbjct: 1 MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLEDEE 60
Query: 61 IVQNSTVRRLERVSSLNYGRNSEDDVDTRAQVFIDNFRRHLFLERQISLRLRYCRTNSSE 120
I +N ++RRLER SSL YG N+EDDVD R+Q+FIDNF R L LERQISL+LRY R NSS
Sbjct: 61 IGENCSMRRLERASSLRYG-NAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSG 120
Query: 121 SEYDERS-PSPPCSSI 132
+E +ERS P PPCSSI
Sbjct: 121 TEDEERSPPPPPCSSI 135
BLAST of Lcy11g020090 vs. ExPASy TrEMBL
Match:
A0A5D3CHZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00970 PE=4 SV=1)
HSP 1 Score: 127.1 bits (318), Expect = 5.4e-26
Identity = 74/125 (59.20%), Postives = 91/125 (72.80%), Query Frame = 0
Query: 1 MAERKSPMVFRLKKTWSKLTAFLRPSLARRRPSRRLRSFVPDDRTLGLRTFLEDET-IVQ 60
MAE+KSPM RLKK KLTA +R L RR S+RL SF DDR +G+R LED++ I +
Sbjct: 1 MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAE 60
Query: 61 NSTVRRLERVSSLNYGRNSEDDVDTRAQVFIDNFRRHLFLERQISLRLRYCRTNSSESEY 120
NS R+LER SS YG E+DVD RA++FI+NFRR L LERQISL+LRY R NS E+EY
Sbjct: 61 NSFARKLERASSSRYG-GYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120
Query: 121 DERSP 125
++ SP
Sbjct: 121 EQISP 124
BLAST of Lcy11g020090 vs. ExPASy TrEMBL
Match:
A0A0A0L4Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1)
HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 74/127 (58.27%), Postives = 93/127 (73.23%), Query Frame = 0
Query: 1 MAERKSPMVFRLKKTWSKLTAFLRPSLARRRPSRRLRSF-VPDDRTLGLRTFLEDET-IV 60
MAE+KSPM RL+K KL A LR L R+ SRRL SF DD+ +G+R LED++ I
Sbjct: 1 MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60
Query: 61 QNSTVRRLERVSSLNYGRNSEDDVDTRAQVFIDNFRRHLFLERQISLRLRYCRTNSSESE 120
++S VR+LER SS YG E+DVD RA++FI+NFRR L LERQISL+LRY R NS E+E
Sbjct: 61 ESSFVRKLERASSSRYG-GYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETE 120
Query: 121 YDERSPS 126
Y++RSPS
Sbjct: 121 YEQRSPS 126
BLAST of Lcy11g020090 vs. ExPASy TrEMBL
Match:
A0A1R3J730 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19032 PE=4 SV=1)
HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 55/125 (44.00%), Postives = 72/125 (57.60%), Query Frame = 0
Query: 1 MAERKSPMVFRLKKTWSKLTAFLRPSLAR-------RRPSRRLRSFVPDDRTLGLRTFLE 60
M ++ R KK KL + L L + RR S R R + + LGL +FLE
Sbjct: 1 MGREDGSILSRFKKAVKKLNSLLSLDLTKWRLSCFLRRASGRWRPTLSFNDRLGLHSFLE 60
Query: 61 DETIVQNSTVRRLERVSSLNYGRNSEDDVDTRAQVFIDNFRRHLFLERQISLRLRYCRTN 119
DE S+VR L+RV S G +DDVD RA++FI NFRR L+LERQ+SL LRYCRT
Sbjct: 61 DEETNGRSSVRALQRVRSYGAG---DDDVDKRAEIFISNFRRQLWLERQVSLELRYCRTT 120
BLAST of Lcy11g020090 vs. ExPASy TrEMBL
Match:
A0A1R3IU67 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_09786 PE=4 SV=1)
HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 54/125 (43.20%), Postives = 72/125 (57.60%), Query Frame = 0
Query: 1 MAERKSPMVFRLKKTWSKLTAFLRPSLAR-------RRPSRRLRSFVPDDRTLGLRTFLE 60
M ++ R KK KL + L L + RR S + R + + LGL +FLE
Sbjct: 1 MGREDGSILSRFKKAVKKLNSLLSLDLTKWRLSCFLRRASGKWRPTLSFNDRLGLHSFLE 60
Query: 61 DETIVQNSTVRRLERVSSLNYGRNSEDDVDTRAQVFIDNFRRHLFLERQISLRLRYCRTN 119
DE S+VR L+RV S G +DDVD RA++FI NFRR L+LERQ+SL LRYCRT
Sbjct: 61 DEETNGTSSVRALQRVRSYGAG---DDDVDKRAEIFISNFRRQLWLERQVSLELRYCRTR 120
BLAST of Lcy11g020090 vs. NCBI nr
Match:
KAG6596691.1 (hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028225.1 hypothetical protein SDJN02_09405, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 154.8 bits (390), Expect = 5.0e-34
Identity = 85/127 (66.93%), Postives = 103/127 (81.10%), Query Frame = 0
Query: 1 MAERKSPMVFRLKKTWSKLTAFLRPSLARRRPSRRLRSFVPDDRTLGLRTFLEDETIVQN 60
MA++KSP++FRLKK+ KLTAFLR +ARR+ SRRLRSF DDRT GLR+FLEDE IV+N
Sbjct: 1 MAQKKSPLLFRLKKSAIKLTAFLRLCVARRQNSRRLRSFGSDDRTAGLRSFLEDERIVEN 60
Query: 61 STVRRLERVSSLNYGRNSEDDVDTRAQVFIDNFRRHLFLERQISLRLRYCRTNSSESEYD 120
+VR+LER SS +Y N EDDVD R+Q+FID F R L LERQISL+LRYCR NSSE+E +
Sbjct: 61 RSVRKLERASSASY-VNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETESE 120
Query: 121 ERSPSPP 128
E+SP P
Sbjct: 121 EKSPPYP 126
BLAST of Lcy11g020090 vs. NCBI nr
Match:
XP_022145292.1 (uncharacterized protein LOC111014780 [Momordica charantia])
HSP 1 Score: 152.1 bits (383), Expect = 3.2e-33
Identity = 90/136 (66.18%), Postives = 106/136 (77.94%), Query Frame = 0
Query: 1 MAERKSPMVFRLKKTWSKLTAFLRPS----LARRRPSRRLRSFVPDDRTLGLRTFLEDET 60
MAE+KSP++ RLKK K+TA LR + LARRRPS RLRSF DRT+GLR+FLEDE
Sbjct: 1 MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLEDEE 60
Query: 61 IVQNSTVRRLERVSSLNYGRNSEDDVDTRAQVFIDNFRRHLFLERQISLRLRYCRTNSSE 120
I +N ++RRLER SSL YG N+EDDVD R+Q+FIDNF R L LERQISL+LRY R NSS
Sbjct: 61 IGENCSMRRLERASSLRYG-NAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSG 120
Query: 121 SEYDERS-PSPPCSSI 132
+E +ERS P PPCSSI
Sbjct: 121 TEDEERSPPPPPCSSI 135
BLAST of Lcy11g020090 vs. NCBI nr
Match:
KAG7015798.1 (hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 131.0 bits (328), Expect = 7.7e-27
Identity = 78/131 (59.54%), Postives = 94/131 (71.76%), Query Frame = 0
Query: 1 MAERKSPMVFRLKKTWSKLTAFLRPSLARRRPSRRLRSFVPDDRTLGLRTFLEDETIVQN 60
MAE +P+V R+KK +KLTAF+R R PSRR+RSF D RT GLR+ L DE+IV+
Sbjct: 1 MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 60
Query: 61 STVRRLERVSSLNYGRNSEDDVDTRAQVFIDNFRRHLFLERQISLRLRYCRTNSSESEYD 120
+VR+LER S G + EDDVD RAQ+FIDNFRR L LERQISL+LRY NSSE +Y+
Sbjct: 61 CSVRKLERGESSRNG-SCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYE 120
Query: 121 ERSPSPPCSSI 132
RSP P SSI
Sbjct: 121 ARSP-PFSSSI 129
BLAST of Lcy11g020090 vs. NCBI nr
Match:
KAG6577759.1 (hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 128.6 bits (322), Expect = 3.8e-26
Identity = 77/131 (58.78%), Postives = 93/131 (70.99%), Query Frame = 0
Query: 1 MAERKSPMVFRLKKTWSKLTAFLRPSLARRRPSRRLRSFVPDDRTLGLRTFLEDETIVQN 60
MAE +P+V R+KK +KLTAF+R R PSRR+RSF D RT GLR+ L DE+IV+
Sbjct: 1 MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 60
Query: 61 STVRRLERVSSLNYGRNSEDDVDTRAQVFIDNFRRHLFLERQISLRLRYCRTNSSESEYD 120
+VR+LER S G + EDDVD RAQ+FIDNFRR L LERQISL+L Y NSSE +Y+
Sbjct: 61 CSVRKLERGESSRNG-SCEDDVDQRAQIFIDNFRRQLMLERQISLKLMYYGINSSEIDYE 120
Query: 121 ERSPSPPCSSI 132
RSP P SSI
Sbjct: 121 ARSP-PFSSSI 129
BLAST of Lcy11g020090 vs. NCBI nr
Match:
KAA0052985.1 (hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK11441.1 hypothetical protein E5676_scaffold139G00970 [Cucumis melo var. makuwa])
HSP 1 Score: 127.1 bits (318), Expect = 1.1e-25
Identity = 74/125 (59.20%), Postives = 91/125 (72.80%), Query Frame = 0
Query: 1 MAERKSPMVFRLKKTWSKLTAFLRPSLARRRPSRRLRSFVPDDRTLGLRTFLEDET-IVQ 60
MAE+KSPM RLKK KLTA +R L RR S+RL SF DDR +G+R LED++ I +
Sbjct: 1 MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAE 60
Query: 61 NSTVRRLERVSSLNYGRNSEDDVDTRAQVFIDNFRRHLFLERQISLRLRYCRTNSSESEY 120
NS R+LER SS YG E+DVD RA++FI+NFRR L LERQISL+LRY R NS E+EY
Sbjct: 61 NSFARKLERASSSRYG-GYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120
Query: 121 DERSP 125
++ SP
Sbjct: 121 EQISP 124
BLAST of Lcy11g020090 vs. TAIR 10
Match:
AT5G57510.1 (unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 54.7 bits (130), Expect = 6.6e-08
Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = 0
Query: 5 KSPMVFRLKKTWSKLTAFLRPSLARRRPSRRLR-SFVPDDRTLGLRTFLEDETIVQNSTV 64
K + F++ W L P L S LR SF +DR F E+E S+
Sbjct: 21 KFVLSFKINSLWG-----LVPMLGSSSSSSSLRLSF--NDRPGLTAAFTENEPDSTGSSR 80
Query: 65 RRLERVSSLNYGRNSEDDVDTRAQVFIDNFRRHLFLERQISLRLRYCRTNSSESEYDERS 124
L R +++Y ++S++D+D +A++FI NF R L +ERQISL L+YC+ N+ Y RS
Sbjct: 81 GALYR--TVSYDQSSDEDIDNKAEMFIANFYRQLKIERQISLELKYCQGNNQSFNY--RS 130
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1CW64 | 1.6e-33 | 66.18 | uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014... | [more] |
A0A5D3CHZ5 | 5.4e-26 | 59.20 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0L4Z8 | 1.3e-24 | 58.27 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1 | [more] |
A0A1R3J730 | 1.1e-13 | 44.00 | Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19032 PE=4 SV=1 | [more] |
A0A1R3IU67 | 2.4e-13 | 43.20 | Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_09786 PE=4 ... | [more] |
Match Name | E-value | Identity | Description | |
KAG6596691.1 | 5.0e-34 | 66.93 | hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022145292.1 | 3.2e-33 | 66.18 | uncharacterized protein LOC111014780 [Momordica charantia] | [more] |
KAG7015798.1 | 7.7e-27 | 59.54 | hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6577759.1 | 3.8e-26 | 58.78 | hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAA0052985.1 | 1.1e-25 | 59.20 | hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK1144... | [more] |
Match Name | E-value | Identity | Description | |
AT5G57510.1 | 6.6e-08 | 36.36 | unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bact... | [more] |