Lcy11g019740 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g019740
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr11: 47398101 .. 47400788 (-)
RNA-Seq Expression	Lcy11g019740
Synteny	Lcy11g019740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATTGGATCCCCCCCAGCTGATGCTTGGAAGCTCAATGTGGACACTTCAAAGTTTGCGAACCAGAGCTTCGGAGGAGTTGGATGGATCATTCGTGACTCCTCGGGGTCTCCAATTTGCATGGGGTATAAGAAGATCAAGAAGAATTGGTCAGTGAAAGTTCTTGAAATCAAAGCTATTTTGGAAGGCATTCGTTGTATACCTTCCATCAAGGCGATTCATCCAGATTTGACTGTTCCCCACATTGTCGTCGAATCGGATGCGACTGGTATCATAAATCTCCTCAGCAAAGGTCCTGAAGACCTTACGGAAGTCGGGTGCCTCGCAGATGAGATCCTCCAGCTGAGCGAAGACATAGGTGATATCAGTTTTGGCTTCTGTCCAAGATCGAGGAATCAAGCTGCCCATATTTTGGCGCGCATTGTCACCTCCCCTCCTGATGTGCTTTGTAATTCTTTTGGTTCTTCTTCTAATTCAGAAGAAGACGAAGGGTTTTGGGTTGGGCCACCCCCTCCTTGGGTTGGTGGGCTCTTAATTGATGTATGGATAATTGTAATGGGTGGCAACATGAGGGTAAATAATGGCAAATATAGCAATTTTTTTTAAAATATTTGCAAATATGGCAAATTTTTTTAATTAATTTTTTATATTCCTGAATTGCCCCTACCCCTGATTGGTGCGCACATCTTCTTTTTCCTCGTCTATCACTGATAGAAAGTTTCTATCACTGATAGAATAAAGTTTCTATCACTGATAGAAAAGCTTTCTATCAGTGATATAAACTTTTTCTATCACTGATAGAATCTATAAGTGATAGAAAAATTGATTGGCGCGCGCATCTTCTTCTTCCTCGTCAATTATTTATATATATATATATTGATAGAAATCTTCTATGAGAGAAAGTCTTTCTATCACTGATAGAATAAAGTTTCTATCACTTATATTTCTATCAGTGATAGAAAAACTGATTGGCGCGCACATCTTCTTCTTCCTCGTCAATTTTTATATATATATTGATAGAAATCTTCTATGATAGAAAGTCTTTCTATCACTGATAGATTCTATCAGTGGTAGAAAAATTTTCTATCAGTGTAGAAAAGCTTTCTATCACTGATAGAAAGGCTCTCTATCAGTGAGTTTCTATCACTGATAGAAAGTTTTTCTATCACTGATAGAAAGTTTTTCTATCACTGATAGATTCTATCAGTGATAGAAAATCTTTCTATCAGTGATGGGCATTTTAGTAATTTTACTTTTCAGATGGTGAGATTTTGTCATTTTTGCAAATATTTCTGCATTTTGCTACTTTTGCAATTAGTTTGGGCCATTTTGCTACTTTTGCAACCGGCCCTTAAACATTCATGTTGTCTGAATTAATGTTATGTTCCTTTTCAAAAAAAAAAAAAGAAAAAATAAAATTTCACAAGTCGTGGAGACCTTCGAGCTTTAGCTTAATACTTGGCAAATAGCATTCATAGTATTGAATAAATTGATATCTAATTATTATTTAAATATCTCAAACAAAATTTATTATTTAAAAAATATAATTTTTTAATCTATTTTTCTTTTTTGTTTTCTTAAAGTCCACTGATATTGTTGTATTTTCAAACACTATCACTGTAATATTTGAATATTATTTAAAAGACGTGGGACCCAAGATAGGTGGAGAATATATTTTAATTATGACGTGACATTTTTTTTTTTTTTTCATATCTAAAGTTATTAAAATGTGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTATATATATATAACGTCGGGGAATATTTTCATAAAATTGAAAAATAAACATTTCCGTTGATATCGATATTTGAAACCTTGCATGTTATTATGAATTTATAGAAAATAGGAAATTTTCGTTTTGGTACAACTTTTGTTTGAAAAAGCTAGCCAAAACCAAACCAACCCGATATATAAATATAACCTCTAAATAAAACCCTAATCCTTTCTAGCATTTTCATTTCAACCAGCCCAGTCATATCATTCACCATCGTCGTCGCACTTTCATGGTATGATTTCTTCATCTACCTGTCCAAGTAGTGAATTATTATTGTCTAATTTATTGGCCAAGTAGTGAATTGTTCTTGTCTAATTTCTTCATGTTAGACTAAACTAGAAGCCAGACTTCGAAAATTTGGGGTGGGAGATTCGAACTTCTAATCTCTTAGTTGGCGGTACATGTCAATTACCGTTGAGCTATGTTCTTTATGTTATTTGTACCAGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTTTGGCCCAAGAAAATTTTTAGTACTACAGTAGTACATGCTCCTTTCATTCAACATTTGACACGTCATTTGATGATATAATATTTTTATTCCATGGGTCCCACACGATTCTTAAATGTTCCTTACATGACAAACAATGAATGGAGGTAGTATAGAAATTTTCCCTGCTCTAAACCTACGTGCCTATGACTTCGTTTCTTAGGAAATTTGTGCAGCAGAAGATCTTGAATTTGACTTTCTATATAAAAAATATTTTCTTAAACGAAGGTATTCATGCTTGGATGGTGGCTCAAAAATCAGCCTCATGAAAAACCTTATATTTCTTGAGGAGGTTCTACCCCATGGAAATGCTTTTTAA

mRNA sequence

ATGGAAATTGGATCCCCCCCAGCTGATGCTTGGAAGCTCAATGTGGACACTTCAAAGTTTGCGAACCAGAGCTTCGGAGGAGTTGGATGGATCATTCGTGACTCCTCGGGGTCTCCAATTTGCATGGGGTATAAGAAGATCAAGAAGAATTGGTCAGTGAAAGTTCTTGAAATCAAAGCTATTTTGGAAGGCATTCGTTGTATACCTTCCATCAAGGCGATTCATCCAGATTTGACTGTTCCCCACATTGTCGTCGAATCGGATGCGACTGGTATCATAAATCTCCTCAGCAAAGGTCCTGAAGACCTTACGGAAGTCGGGTGCCTCGCAGATGAGATCCTCCAGCTGAGCGAAGACATAGGTGATATCAGTTTTGGCTTCTGTCCAAGATCGAGGAATCAAGCTGCCCATATTTTGGCGCGCATTGTCACCTCCCCTCCTGATGTGCTTTGTAATTCTTTTGGTTCTTCTTCTAATTCAGAAGAAGACGAAGGGTTTTGGGTTGGGCCACCCCCTCCTTGGGAAATTTGTGCAGCAGAAGATCTTGAATTTGACTTTCTATATAAAAAATATTTTCTTAAACGAAGGTATTCATGCTTGGATGGTGGCTCAAAAATCAGCCTCATGAAAAACCTTATATTTCTTGAGGAGGTTCTACCCCATGGAAATGCTTTTTAA

Coding sequence (CDS)

ATGGAAATTGGATCCCCCCCAGCTGATGCTTGGAAGCTCAATGTGGACACTTCAAAGTTTGCGAACCAGAGCTTCGGAGGAGTTGGATGGATCATTCGTGACTCCTCGGGGTCTCCAATTTGCATGGGGTATAAGAAGATCAAGAAGAATTGGTCAGTGAAAGTTCTTGAAATCAAAGCTATTTTGGAAGGCATTCGTTGTATACCTTCCATCAAGGCGATTCATCCAGATTTGACTGTTCCCCACATTGTCGTCGAATCGGATGCGACTGGTATCATAAATCTCCTCAGCAAAGGTCCTGAAGACCTTACGGAAGTCGGGTGCCTCGCAGATGAGATCCTCCAGCTGAGCGAAGACATAGGTGATATCAGTTTTGGCTTCTGTCCAAGATCGAGGAATCAAGCTGCCCATATTTTGGCGCGCATTGTCACCTCCCCTCCTGATGTGCTTTGTAATTCTTTTGGTTCTTCTTCTAATTCAGAAGAAGACGAAGGGTTTTGGGTTGGGCCACCCCCTCCTTGGGAAATTTGTGCAGCAGAAGATCTTGAATTTGACTTTCTATATAAAAAATATTTTCTTAAACGAAGGTATTCATGCTTGGATGGTGGCTCAAAAATCAGCCTCATGAAAAACCTTATATTTCTTGAGGAGGTTCTACCCCATGGAAATGCTTTTTAA

Protein sequence

MEIGSPPADAWKLNVDTSKFANQSFGGVGWIIRDSSGSPICMGYKKIKKNWSVKVLEIKAILEGIRCIPSIKAIHPDLTVPHIVVESDATGIINLLSKGPEDLTEVGCLADEILQLSEDIGDISFGFCPRSRNQAAHILARIVTSPPDVLCNSFGSSSNSEEDEGFWVGPPPPWEICAAEDLEFDFLYKKYFLKRRYSCLDGGSKISLMKNLIFLEEVLPHGNAF

Homology

[Close]

BLAST of Lcy11g019740 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 51/138 (36.96%), Postives = 78/138 (56.52%), Query Frame = 0


Query: 6   PPADAWKLNVDTSKFANQSFGGVGWIIRDSSGSPICMGYKKIKKNWSVKVLEIKAILEGI 65
           P +++WKLN D +  A+ + GG+GWI+RD  G  I    + I+   ++  LE+ AI EG+
Sbjct: 82  PTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGL 141

Query: 66  RCI--PSIKAIHPDLTVPHIVVESDATGIINLLSKGPEDLTEVGCLADEILQLSEDIGDI 125
           R I     + I  +   P I +ESD+   I+LL +  +D TE+  L +EI Q+ ED+  +
Sbjct: 142 RAIRQEHCRPIQQEHCRP-IHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIV 201

Query: 126 SFGFCPRSRNQAAHILAR 142
           S     R  N+ AH LAR
Sbjct: 202 SMRHISREANKVAHDLAR 218

[Close]

BLAST of Lcy11g019740 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 47/136 (34.56%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 6   PPADAWKLNVDTSKFANQSFGGVGWIIRDSSGSPICMGYKKIKKNWSVKVLEIKAILEGI 65
           PP   W LN D S   +   GG+GWIIR   G  +  G + ++   +VK+LE  AILEG+
Sbjct: 74  PPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGL 133

Query: 66  RCIPSIKAIHPDLTVPHIVVESDATGIINLLSKGPEDLTEVGCLADEILQLSEDIGDISF 125
           R + ++  + P      + +E+D+  + +LL++  EDLT+ G + +EIL L +    ++F
Sbjct: 134 RNLTNLGVLRP------LHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAF 193

Query: 126 GFCPRSRNQAAHILAR 142
               R  N  AH LA+
Sbjct: 194 AKVGRETNGCAHSLAQ 203

[Close]

BLAST of Lcy11g019740 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-12
Identity = 49/136 (36.03%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 6   PPADAWKLNVDTSKFANQSFGGVGWIIRDSSGSPICMGYKKIKKNWSVKVLEIKAILEGI 65
           P +++WKLN + +  A+ + GG+GWI+RD  G  I    + I+   ++  LE+ AI EG+
Sbjct: 82  PTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICEGL 141

Query: 66  RCIPSIKAIHPDLTVPHIVVESDATGIINLLSKGPEDLTEVGCLADEILQLSEDIGDISF 125
           R      AI  +   P I +ESD+   I+LL +  +D TE+  L +EI Q+ +D+  +S 
Sbjct: 142 R------AIRQEHCRP-IHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSM 201

Query: 126 GFCPRSRNQAAHILAR 142
               R  N+ AH LAR
Sbjct: 202 RHISREANKVAHGLAR 210

[Close]

BLAST of Lcy11g019740 vs. ExPASy TrEMBL
Match: A0A6P5S2T0 (uncharacterized protein LOC110751913 OS=Prunus avium OX=42229 GN=LOC110751913 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.1e-10
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 0


Query: 6   PPADAWKLNVDTSKFANQSFGGVGWIIRDSSGSPICMGYKKIKKNWSVKVLEIKAILEGI 65
           PP    K+N D + FA    GGVGW+IRDS G  +C G +   +  S  ++E+ AI   +
Sbjct: 79  PPPSLLKVNCDVAWFAQLLRGGVGWVIRDSHGLLLCAGGEGDLRGSSALLMELLAIRHAL 138

Query: 66  RCIPSIKAIHPDLTVPHIVVESDATGIINLLSKGPEDLTEVGCLADEILQLSEDIGDISF 125
                    H  LT  H++VESD    I++L+      +++  +  +I QL      +SF
Sbjct: 139 SA-----CAHFQLT--HVMVESDTQRGISMLNGQATVDSDLEGIVFDIQQLVATFSQVSF 198

Query: 126 GFCPRSRNQAAHILARIVT 145
            F P+S N+ AH +A  V+
Sbjct: 199 VFAPKSCNRVAHTVAGFVS 210

[Close]

BLAST of Lcy11g019740 vs. ExPASy TrEMBL
Match: A0A2N9EZP7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7991 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.7e-09
Identity = 44/136 (32.35%), Postives = 70/136 (51.47%), Query Frame = 0


Query: 6   PPADAWKLNVDTSKFANQSFGGVGWIIRDSSGSPICMGYKKIKKNWSVKVLEIKAILEGI 65
           PP  ++K N D + F NQ   G+G IIR+++G PI    KKI    SV+++E +A  E +
Sbjct: 146 PPPGSFKANFDGAIFTNQLSAGIGVIIRNTNGDPIATLSKKIPLATSVEIVEARAAREAL 205

Query: 66  RCIPSIKAIHPDLTVPHIVVESDATGIINLLSKGPEDLTEVGCLADEILQLSEDIGDISF 125
                   +   L + +++ E D++ II  LS   E +T  G + +E   ++      +F
Sbjct: 206 -------LLAYQLQLSNVIFEGDSSIIIAALSTSDECVTNYGTIIEECKAVAHSCSWRNF 265

Query: 126 GFCPRSRNQAAHILAR 142
               R  N AAH+LAR
Sbjct: 266 QHIRRQGNSAAHLLAR 274

[Close]

BLAST of Lcy11g019740 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-13
Identity = 47/136 (34.56%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 6   PPADAWKLNVDTSKFANQSFGGVGWIIRDSSGSPICMGYKKIKKNWSVKVLEIKAILEGI 65
           PP   W LN D S   +   GG+GWIIR   G  +  G + ++   +VK+LE  AILEG+
Sbjct: 74  PPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGL 133

Query: 66  RCIPSIKAIHPDLTVPHIVVESDATGIINLLSKGPEDLTEVGCLADEILQLSEDIGDISF 125
           R + ++  + P      + +E+D+  + +LL++  EDLT+ G + +EIL L +    ++F
Sbjct: 134 RNLTNLGVLRP------LHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAF 193

Query: 126 GFCPRSRNQAAHILAR 142
               R  N  AH LA+
Sbjct: 194 AKVGRETNGCAHSLAQ 203

[Close]

BLAST of Lcy11g019740 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-13
Identity = 51/138 (36.96%), Postives = 78/138 (56.52%), Query Frame = 0


Query: 6   PPADAWKLNVDTSKFANQSFGGVGWIIRDSSGSPICMGYKKIKKNWSVKVLEIKAILEGI 65
           P +++WKLN D +  A+ + GG+GWI+RD  G  I    + I+   ++  LE+ AI EG+
Sbjct: 82  PTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGL 141

Query: 66  RCI--PSIKAIHPDLTVPHIVVESDATGIINLLSKGPEDLTEVGCLADEILQLSEDIGDI 125
           R I     + I  +   P I +ESD+   I+LL +  +D TE+  L +EI Q+ ED+  +
Sbjct: 142 RAIRQEHCRPIQQEHCRP-IHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIV 201

Query: 126 SFGFCPRSRNQAAHILAR 142
           S     R  N+ AH LAR
Sbjct: 202 SMRHISREANKVAHDLAR 218

[Close]

BLAST of Lcy11g019740 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 4.1e-12
Identity = 49/136 (36.03%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 6   PPADAWKLNVDTSKFANQSFGGVGWIIRDSSGSPICMGYKKIKKNWSVKVLEIKAILEGI 65
           P +++WKLN + +  A+ + GG+GWI+RD  G  I    + I+   ++  LE+ AI EG+
Sbjct: 82  PTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICEGL 141

Query: 66  RCIPSIKAIHPDLTVPHIVVESDATGIINLLSKGPEDLTEVGCLADEILQLSEDIGDISF 125
           R      AI  +   P I +ESD+   I+LL +  +D TE+  L +EI Q+ +D+  +S 
Sbjct: 142 R------AIRQEHCRP-IHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSM 201

Query: 126 GFCPRSRNQAAHILAR 142
               R  N+ AH LAR
Sbjct: 202 RHISREANKVAHGLAR 210

[Close]

BLAST of Lcy11g019740 vs. NCBI nr
Match: KAF7821986.1 (putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora])

HSP 1 Score: 75.9 bits (185), Expect = 5.1e-10
Identity = 44/136 (32.35%), Postives = 73/136 (53.68%), Query Frame = 0


Query: 12  KLNVDTSKFANQSFGGVGWIIRDSSGSPICMGYKKIKKNWSVKVLEIKAILEGIRCIPSI 71
           K+NVD S  +N     +G ++R+  G  +    KK+K   +++ +E  A+LEG++     
Sbjct: 498 KINVDASCRSNGE-QQIGCVMRNDDGRCLMAMSKKVKTGATIEYVEALAVLEGMKQAQL- 557

Query: 72  KAIHPDLTVPHIVVESDATGIINLLSKGPEDLTEVGCLADEILQLSEDIGDISFGFCPRS 131
                 +    I++ESDA  ++NLL+KG  D++ +G + +EIL+L      ISF +  R 
Sbjct: 558 ------MCCNRIIIESDAQRVVNLLNKGNIDISYLGLVIEEILELKSHFSSISFNWVKRE 617

Query: 132 RNQAAHILARIVTSPP 148
            N  AH LA  V + P
Sbjct: 618 ANMVAHTLAHSVVNFP 625

[Close]

BLAST of Lcy11g019740 vs. NCBI nr
Match: XP_019158432.1 (PREDICTED: uncharacterized protein LOC109155154 [Ipomoea nil])

HSP 1 Score: 75.9 bits (185), Expect = 5.1e-10
Identity = 55/155 (35.48%), Postives = 77/155 (49.68%), Query Frame = 0


Query: 6   PPADAWKLNVDTSKFANQSFGGVGWIIRDSSGSPICMGYKKIKKNWSVKVLEIKAILEGI 65
           PP    K NVD +   N    G+G IIRD  GS +     +I+ ++  K  E  A+ E +
Sbjct: 115 PPLGYLKCNVDAANDFNNRKTGIGCIIRDDKGSFVAALQTQIEGSYHPKTAEAIAVREAL 174

Query: 66  RCIPSIKAIHPDLTVPHIVVESDATGIINLLSKGPEDLTEVGCLADEILQLSEDIGDISF 125
           +    IK +H       I+VESDA  +IN L K    +T    + D+I  L+ D+ D+SF
Sbjct: 175 KW---IKILH----YQSILVESDALLVINGL-KDLSCITSFDLILDDIRNLAIDLIDVSF 234

Query: 126 GFCPRSRNQAAHILARIV----------TSPPDVL 151
            F  RS N AAH+LAR            T+PP +L
Sbjct: 235 LFAKRSANMAAHLLAREAMFNADRKEWRTAPPSIL 261

[Close]

BLAST of Lcy11g019740 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-08
Identity = 39/137 (28.47%), Postives = 62/137 (45.26%), Query Frame = 0


Query: 5   SPPADAWKLNVDTSKFANQSFGGVGWIIRDSSGSPICMGYKKIKKNWSVKVLEIKAILEG 64
           +PP    K N D +        G+GWI+R+ SG  + MG + + +  +V   E++A+   
Sbjct: 139 APPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALRWA 198

Query: 65  IRCIPSIKAIHPDLTVPHIVVESDATGIINLLSKGPEDLTEVGCLADEILQLSEDIGDIS 124
           +  +              I+ ESDA  ++NLL+      T    L D I QL     ++ 
Sbjct: 199 VLTMSR-------FNYKRIIFESDAQALVNLLNSDDFWPTLQPALED-IQQLLHHFEEVK 258

Query: 125 FGFCPRSRNQAAHILAR 142
           F F PR  N+ A  +AR
Sbjct: 259 FEFTPRGGNKVADRIAR 267

[Close]

BLAST of Lcy11g019740 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 2.1e-06
Identity = 39/141 (27.66%), Postives = 63/141 (44.68%), Query Frame = 0


Query: 1   MEIGSPPADAWKLNVDTSKFANQSFGGVGWIIRDSSGSPICMGYKKIKKNWSVKVLEIKA 60
           +E  +PPA   K N D      +     GWIIR+  G+PI  G  K+    +    E KA
Sbjct: 324 IEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKA 383

Query: 61  ILEGIRCIPSIKAIHPDLTVPHIVVESDATGIINLLSKGPEDLTEVGCLADEILQLSEDI 120
           +L  ++    I+          + +E D   +INL++ G    + +    ++I   +   
Sbjct: 384 LLAALQ-QTWIRG------YTQVFMEGDCQTLINLIN-GISFHSSLANHLEDISFWANKF 443

Query: 121 GDISFGFCPRSRNQAAHILAR 142
             I FGF  R  N+ AH+LA+
Sbjct: 444 ASIQFGFIRRKGNKLAHVLAK 456

[Close]

BLAST of Lcy11g019740 vs. TAIR 10
Match: AT3G23320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 3.6e-06
Identity = 37/136 (27.21%), Postives = 59/136 (43.38%), Query Frame = 0


Query: 6   PPADAWKLNVDTSKFANQSFGGVGWIIRDSSGSPICMGYKKIKKNWSVKVLEIKAILEGI 65
           P A+  K N D S  A +   G+ WIIR+S G+ +  G  K +   ++K  E  A++  I
Sbjct: 33  PGAEWVKCNYDVSNHAGRQDSGLRWIIRNSQGTCLDCGCGKFQGRQTIKEAECTALIWAI 92

Query: 66  RCIPSIKAIHPDLTVPHIVVESDATGIINLLSKGPEDLTEVGCLADEILQLSEDIGDISF 125
           +C         DL    +  E D    +N L +  E    +    + I Q S+    + F
Sbjct: 93  QCA-------WDLGYRRVEFEGDNI-TVNRLIRNKETNPRLRYYLEFIQQWSKAFTTVKF 152

Query: 126 GFCPRSRNQAAHILAR 142
            F  R +N    +LA+
Sbjct: 153 TFRHREQNVCVDVLAK 160

[Close]

BLAST of Lcy11g019740 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-05
Identity = 33/137 (24.09%), Postives = 61/137 (44.53%), Query Frame = 0


Query: 6   PPADAW-KLNVDTSKFANQSFGGVGWIIRDSSGSPICMGYKKIKKNWSVKVLEIKAILEG 65
           PP   W K N D +   +    G+GW++R+  G    MG + + K  SV   E++A+   
Sbjct: 422 PPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWA 481

Query: 66  IRCIPSIKAIHPDLTVPHIVVESDATGIINLLSKGPEDLTEVGCLADEILQLSEDIGDIS 125
           +  +   +         +++ ESD+  +I +L+   E    +     ++ +L     ++ 
Sbjct: 482 VLSLSRFQ-------YNYVIFESDSQVLIEILN-NDEIWPSLKPTIQDLQRLLSQFTEVK 541

Query: 126 FGFCPRSRNQAAHILAR 142
           F F PR  N  A  +AR
Sbjct: 542 FVFIPREGNTLAERVAR 550

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BLAST of Lcy11g019740 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 8.9e-05
Identity = 41/143 (28.67%), Postives = 55/143 (38.46%), Query Frame = 0


Query: 5   SPPA-DAWKLNVDTSKFANQSFGGVGWIIRDSSGSPICMGYKKIKKNWSVKVLEIKAILE 64
           SPP  D  K N D S     +  G+GWI+R+S G+ I  G  K +   + +  E      
Sbjct: 106 SPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAE------ 165

Query: 65  GIRCIPSIKAIHPDLTVPH--IVVESD---ATGIINLLSKGPEDLTEVGCLADEILQLSE 124
              C   I AI       H  ++ E D    T +IN  S  P     +    D I     
Sbjct: 166 ---CSTLIWAIQASYGFGHKKVIFEGDNQTITRMINTKSSNP----RLQHFLDTIQSWIP 225

Query: 125 DIGDISFGFCPRSRNQAAHILAR 142
               I F F  R +N  A  LA+
Sbjct: 226 SFESIEFSFKHREQNGCADFLAK 235

The following BLAST results are available for this feature:

BLAST of Lcy11g019740 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g019740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSV1	1.1e-13	36.96	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DNV9	1.1e-13	34.56	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CP26	2.0e-12	36.03	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6P5S2T0	7.1e-10	33.09	uncharacterized protein LOC110751913 OS=Prunus avium OX=42229 GN=LOC110751913 PE...	[more]
A0A2N9EZP7	2.7e-09	32.35	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7991 PE=4 SV=1	[more]

BLAST of Lcy11g019740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	2.2e-13	34.56	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022156777.1	2.2e-13	36.96	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022143535.1	4.1e-12	36.03	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
KAF7821986.1	5.1e-10	32.35	putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-c...	[more]
XP_019158432.1	5.1e-10	35.48	PREDICTED: uncharacterized protein LOC109155154 [Ipomoea nil]	[more]

BLAST of Lcy11g019740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34320.1	1.7e-08	28.47	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G09510.1	2.1e-06	27.66	Ribonuclease H-like superfamily protein	[more]
AT3G23320.1	3.6e-06	27.21	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT4G29090.1	1.1e-05	24.09	Ribonuclease H-like superfamily protein	[more]
AT5G65005.1	8.9e-05	28.67	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 9..144 e-value: 7.9E-13 score: 50.6
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 14..141 e-value: 1.3E-17 score: 63.8
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 5..168
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 5..168
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 13..141 e-value: 8.44634E-22 score: 84.6732
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 10..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g019740.1	Lcy11g019740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity