Lcy11g019320 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g019320
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr11: 46661181 .. 46665876 (+)
RNA-Seq Expression	Lcy11g019320
Synteny	Lcy11g019320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTATCATAATGCCAGACCCACCTATCTGGTACCGCCATGCTGATAGGAATCCTGATGATCTCCTGAACGTCTTCCTCATAAAGAAATTGTTGGAGCTTTTGAATATCTCACTGACAAGATGGCAACACGCAGTCTGCAGCTTTCAGCTCCTCACTATATTCTTTATAGCCAATGACTTTAAAAGAATAAGGCCGAGGTAACCAAGGATCCTTCATTACCCGAATAGATTTTCCATCCCCTACCTGCCTTCGAATGCCTTTTTTCAACAGATCCAATCCCCATATAAAGCCCTTCCAAAAATATATATTCGACAATTAAATTAATACAAACGTCACTTGAAAGAAATGGATTTTCTTAATATGATAAGATCAAATTTTGTAAATGGGAAAGCTTGGATGTTAAATATTATTCGAATTGTGACATTTTTATGTATCTAAATATTTAAACAATATAAATATTTTTTCTGAAGAATCTAATTGAGAATTATTAATACATCTTTAAGGTGTCATTTGATAATATTTTTTTTGGGGCAACTAGATAAATGACTATTTTTAATTGGGCATTTTGAAAAATGGCTATATGATTTTTACTATGCTAAACATCAAATCATCTAAAAACGAGAAAAAATCATTACTCACTATTTCCCAACTTAATTCGAAAATTGGGATTTAGTACTCACCTTGTTTTTTTTTTAAAAAATCTGAAACCCTTGAGATTCTTCCCATTTTCTTCGTTATTTGTGCGGTCTTTCCCATTCTCATCTTTTTCGAACCATTACAAACGAAATTCTTGAGAAACCTCCAATTTTCTTTTGGGCACCTTCCTCCAAATGCTTCTTCCTCCAAATGTTTCTTCCTCTTCCTCCAAAAGCTTTCGTTTGGAAACCAGTAAAGACTTTGAAAAAAACTAAAAAATACTTTGTGTTGGAAAATAGGATACAAAGAGGAAAATAATGATAGATAAATACAAAATACAGTATTTAACACATACCTATGATGTAGATCAATAACCCTTTCAATGGCGATATGAACGACAGAGCAAAAAAATCAATGGATGGCAAAAAGTTGGGAAAAACGATGAAGATGCTAATTAGATAATTAAAATATAAGAATCTAATCGAAAATTAAAAATGAAAACCTAATTTCTATGTAATCTTTTAGTTTTAATAAAGATAAAATATGAATTTGAATTTTGAGAGATAGGTGAGAGAAGATAGATACTGTAATTCCTTGATTTATGGGATAAACTGTTTTGTTTTTTTTTTAAAAAATTAAATCAGATAATGGCTTCCATGTGAACATGAAACTTGACTCAAGGGTATAATTGAAAAGACGATCCTCACGAAAATAGGTTAAAAAAAGGCCATTTTTCATTAAAAAAATCCGATTTGACCATTTTTCAAAACTACCTTGTAATTTTTGGCCATTTCTAAGGATTTTCCTTTTTTTGATACACAATTCAAGTCTAAAGTTAGAAGTAGAGATTCTTGTTTTTCAAAAACTCATATTTTCTAACTATTTTTTTTGCCTTGACAAATCTCTCTTTAATTTTTTTTCCTAGTTCTAACTATTCTCTCTCTACAATTTTATTTTTCTAAATTTCTCTCTCTTAGAAATTTCTATCTCTTAAAATTTTCATCTCTATATAACTTTTGTAACTTTTTCGTTCTTTCAAACATTCATTTCTCTCTTTCAAACATTATTTCTCTCTTTTTTCTAAACACGTCCTTCTCTCTGACATATCTATCTCTAAAATTTGTTCCTAAATTTTCTTTTTCTCTCTCATTTATTTTCTCTCTAATAAATACATCTCTAACTTTTCTCTCTTCAATCTTCATATACATTTTTTTCTCTAAATTTTCTTTCAACAACTTTTCATTATTTCTATTTCTATAACATATCTTTTACATTCAACTTCACTCCTTCCCAACTTTCTCTCTTCCCCTCTAACTTTTCTTTAACTGTTTCTAATTTTAATACTATTTTTTTTTTTTAAAAAGCCCCTACTTAATATAATTTTTTTTTTCTAACACATCTCTCTCTAAATATTTTTTTTTTCTTTTATCCCTCTAAATTCTCTCTCAAAACTTTTCTCTTAAAAAAAAAATATCTCTATGTCTCTAAAATTTTATTTCTATATATACCTCCACATATTTTTCTCTCAGACAATTCATTTCTATCTCTCAAACTTTTTTGTTTTTCAAAAATTGAAACCACAAAAAACATAAAAAAATATCAAAAACCAAAAACAAAATTAATGATCAAACAAGGACTAAAAAATCGAGGACTTCGTTTTTTCGATAGCCATTTATTTAATGGGTGGATAGGCACATACTCTGAATCACAATCGTGGAGAGTACTGCCTGATCATTTCTACAAACTTAAAGTTCCAATTCATATTCTTTTTATATTATGCATTTTGCAAAAATGTTCTTCTCTTTCTTTTGGAAAATTTTGAAAATCTCCATTACTAAATCCTTAATTTGTATATCTTAGTGTTTCTAACCATCCACTCATTTTTGCTCAATCAATCGTGTTATGGTTATACATATATCGTAGTACATACAAATAATAGTGAAAACTAAATCCGATCGATCTTTTGAGTCCGTTTCAAGACAAGATAACTAGTCAACCAATCTTGGGATAAAGCTCTCTTGCACCTATGTTTATTTCTACTTTAACTCTTATACATAGAAAATGAGACTCAATATTTTGACTGCTAATTTTTATTTATACAAGCTATTTTCTTTCACTCATATAACTATCTAATCTAGCTCATTAATCCAAATCATTAATATAAAACGAAAGATATCTATTCAATTCATTTCACCACTAGTCAACCAATCTTGGGATAATCTTGTTGGGCCAGATTTTGAACTCGTGGTTATTTTTTGGTGGTCCGTGTGGAGTCTTCGGAACAATTTAAGTTGGGGTGGCCAGTCAGATGGGCCGAACTTGTGGATGTACGCAACTGATTGCCTTAGTGCCTTCCATGCTATTGGGAGGCGTCGCCTATCGGGAGTTGTTGAATGAGAAATTTCGGCCAATCACAAATTGTCACGTCATTAATTTAAATCAATGATAAAATAAATTTGGAACCAATTACAAATTTACATGTGTCCCTAAGTTAAATTAATAGACATCAAAAATTGGCAAATCAAATAGTGCCACTTGTCTATTATTGATCCATCGGATGACATAAGTCAAGTCTAATCAAATAATGCCACGTGGCAATTGGACCTGAGACTAATGTAACCCGAGATCATTGAAGAAATTGGGCTAAATTAAAATAATCCAGCTTTATTAAAAATGGGTTGGATTAAAGCCCAAATATAGCTCAAGCCCAAAGGTTGGGCCCAAGCCCAAGCCCATATGAGGTCCATCAAACTCTATAAATAGAGGAGGCCACCATTCATTTTGGGGGGAGGGAGATTTAGAGACAGAGTCAGAGAACTCAGAGTCTAGAGCATTCTGCCAGAGTCCAGAGTCGTCAGAAGCCAAAGAGTCAAGAGAATTCAGAAGGATTCGAGATTCAGAATTCAAAGGATTCAAGACTCAGAAGGTTTGAAGACTAGAAGACTCTAAGAAGAGATCAACAAGCCAACCGACTGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAAGATCAACAAGCCAATCGACCGATCAAGAGGATCAACAAGTCAGCAGGTCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACATATCATCAAGCCAACAGGCCGATCCAAAAAGAACGTCAAGCCAGCAGGCCGATCATCCAAGAAGATTAACAAGTCACAACAGGCCGATCCAAAAGATCATTAAGCCAATAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGGTCGATCTAAGAGATCATCAAACCAATAAGCCGATCCAAGAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGCCGATCATCCAAGAAGCCCAACAAACCGGCCCAAGAAGAGCAACAAGCTAGAGGCCAAAGTTTATATATTTGTGAGAAAGAATCAGAGGATAAATATTAGAGACTGTAACACTTCTACATACAAATTCAATAAAATCAAGTTCATTTCCACGAATTAAATTTCCTTTGTTGAAATCTCGTGTGAACAGGAGTCTATTTACGGACCCAATCGATTGATCACGTGGAGCGTTGTGTGTGGAAGCCGAATCTTGGTAGGGAGCTGAAGCTTAACGTTGATGCTTCTGTTCGACCTGATTCAAGTGAAGCTGGAGGTGGTTGTGTGTTACGTAATGCTGATGGTGAGGTCCTTATGGCGGCCTGTTTGACTCTGCAGCGGTGTTGGAGTGTGGATTTGGCTGAGGGTTGGACTTTGTATGAAGGGGTCCAACTTGCTCGGCAGATGGATTTTTCTGAATTTGTGGTGGAGACCGATTCTTTGAGGTTGATCAAAATTCTTCATGGTGATTTTCAGGATGTTTCAGAAGTGGGGTTGATGGATGATATCCGTAGGCTTCTTCATTCTTGTGATAGTGGCAAGTTTCTGTTTACACCACGTCAGGGAAATAAAGTGGCACATGCTCTAGCTAGTTTGACCTTTTGTTATTTTGATTATGTTTGGCTTGAAGAGTGGCATAGTGAAATCTCTGATGTACTGATTTGTGATGCCACTTTATTCTAA

mRNA sequence

ATGTTTATCATAATGCCAGACCCACCTATCTGGTACCGCCATGCTGATAGGAATCCTGATGATCTCCTGAACGTCTTCCTCATAAAGAAATTGTTGGAGCTTTTGAATATCTCACTGACAAGATGGCAACACGCAGTCTGCAGCTTTCAGCTCCTCACTATATTCTTTATAGCCAATGACTTTAAAAGAATAAGGCCGAGGGAGCTGAAGCTTAACGTTGATGCTTCTGTTCGACCTGATTCAAGTGAAGCTGGAGGTGGTTGTGTGTTACGTAATGCTGATGGTGAGGTCCTTATGGCGGCCTGTTTGACTCTGCAGCGGTGTTGGAGTGTGGATTTGGCTGAGGGTTGGACTTTGTATGAAGGGGTCCAACTTGCTCGGCAGATGGATTTTTCTGAATTTGTGGTGGAGACCGATTCTTTGAGGTTGATCAAAATTCTTCATGGTGATTTTCAGGATGTTTCAGAAGTGGGGTTGATGGATGATATCCGTAGGCTTCTTCATTCTTGTGATAGTGGCAAGTTTCTGTTTACACCACGTCAGGGAAATAAAGTGGCACATGCTCTAGCTAGTTTGACCTTTTGTTATTTTGATTATGTTTGGCTTGAAGAGTGGCATAGTGAAATCTCTGATGTACTGATTTGTGATGCCACTTTATTCTAA

Coding sequence (CDS)

ATGTTTATCATAATGCCAGACCCACCTATCTGGTACCGCCATGCTGATAGGAATCCTGATGATCTCCTGAACGTCTTCCTCATAAAGAAATTGTTGGAGCTTTTGAATATCTCACTGACAAGATGGCAACACGCAGTCTGCAGCTTTCAGCTCCTCACTATATTCTTTATAGCCAATGACTTTAAAAGAATAAGGCCGAGGGAGCTGAAGCTTAACGTTGATGCTTCTGTTCGACCTGATTCAAGTGAAGCTGGAGGTGGTTGTGTGTTACGTAATGCTGATGGTGAGGTCCTTATGGCGGCCTGTTTGACTCTGCAGCGGTGTTGGAGTGTGGATTTGGCTGAGGGTTGGACTTTGTATGAAGGGGTCCAACTTGCTCGGCAGATGGATTTTTCTGAATTTGTGGTGGAGACCGATTCTTTGAGGTTGATCAAAATTCTTCATGGTGATTTTCAGGATGTTTCAGAAGTGGGGTTGATGGATGATATCCGTAGGCTTCTTCATTCTTGTGATAGTGGCAAGTTTCTGTTTACACCACGTCAGGGAAATAAAGTGGCACATGCTCTAGCTAGTTTGACCTTTTGTTATTTTGATTATGTTTGGCTTGAAGAGTGGCATAGTGAAATCTCTGATGTACTGATTTGTGATGCCACTTTATTCTAA

Protein sequence

MFIIMPDPPIWYRHADRNPDDLLNVFLIKKLLELLNISLTRWQHAVCSFQLLTIFFIANDFKRIRPRELKLNVDASVRPDSSEAGGGCVLRNADGEVLMAACLTLQRCWSVDLAEGWTLYEGVQLARQMDFSEFVVETDSLRLIKILHGDFQDVSEVGLMDDIRRLLHSCDSGKFLFTPRQGNKVAHALASLTFCYFDYVWLEEWHSEISDVLICDATLF

Homology

[Close]

BLAST of Lcy11g019320 vs. ExPASy TrEMBL
Match: A0A6J1DBJ7 (uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018973 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 8.8e-21
Identity = 64/151 (42.38%), Postives = 87/151 (57.62%), Query Frame = 0


Query: 69  LKLNVDASVRPDSSEAGGGCVLRNADGEVLMAACLTLQRCWSVDLAEGWTLYEGVQLARQ 128
           LK+NVDA+ R +S  AG G ++R++ G V + A   L R   VD  EG+ +YEG+ LA +
Sbjct: 112 LKVNVDAAFRKESFVAGVGVIIRDSTGLVYLTAIRLLARASDVDWVEGFAVYEGILLAVE 171

Query: 129 MDFSEFVVETDSLRLIKILHGDFQDVSEVGLMDDIRRLLHSCDSGK--FLFTPRQGNKVA 188
             F  F +ETDSLR+  +L  D  D SEVG++  + +L  S  + +  F FT R GN  A
Sbjct: 172 AGFIRFQIETDSLRIFNLLTTDCVDDSEVGVLCSVIKLFLSSHAERVSFSFTHRNGNAXA 231

Query: 189 HALASLTFCY-FDYVWLEEWHSEISDVLICD 217
           H LA L        +W+EEW  EIS VL  D
Sbjct: 232 HLLAQLALTSPHLQIWVEEWPDEISSVLAVD 262

[Close]

BLAST of Lcy11g019320 vs. ExPASy TrEMBL
Match: A0A6J1CIF1 (uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011237 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.7e-14
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 0


Query: 67  RELKLNVDASVRPDSSEAGGGCVLRNADGEVLMAACLTLQRCWSVDLAEGWTLYEGVQLA 126
           R  K+N DAS       AG G ++RN  G+V+ +A   L+   SVD+AE     EG+QLA
Sbjct: 40  RIYKINTDASFLASDQHAGLGIIIRNDRGQVMASATKYLENIQSVDMAEAIVAVEGLQLA 99

Query: 127 RQMDFSEFVVETDSLRLIKILHGDFQDVSEVG-LMDDIRRLLHSCDSGKFLFTPRQGNKV 186
            ++  +  ++ETDS R+  +     +D+SE G ++   +          F F  R+GNK 
Sbjct: 100 SKIGVNPVILETDSSRIFNLFSQPSEDLSETGEIVLKAKNFWTQSLHASFNFVKREGNKA 159

Query: 187 AHALASLTFCYFDY-VWLEEWHSEISDVL 214
           AH LA       ++ +W+E+W  E+   L
Sbjct: 160 AHMLARRALLLREFSIWMEDWPLELKSCL 188

[Close]

BLAST of Lcy11g019320 vs. ExPASy TrEMBL
Match: A0A6J1C467 (uncharacterized protein LOC111007775 OS=Momordica charantia OX=3673 GN=LOC111007775 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.1e-14
Identity = 54/150 (36.00%), Postives = 82/150 (54.67%), Query Frame = 0


Query: 70  KLNVDASVRPDSSEAGGGCVLRNADGEVLMAACLTLQRCWSVDLAEGWTLYEGVQLARQM 129
           K+NVDA+ +  +  AG   ++R++   VL++A   +     V LAE     EGV LA + 
Sbjct: 82  KVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHVSDVTLAECLAAQEGVCLAIEA 141

Query: 130 DFSEFVVETDSLRLIKILHGDFQDVSEVG-LMDDIRRLLHSCD-SGKFLFTPRQGNKVAH 189
               F +ETDS ++  +L  D +D SE+G L   IR ++ S    G F F  R+GN  AH
Sbjct: 142 GLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHIVSSLHIGGGFSFVNREGNSGAH 201

Query: 190 ALASLTFCYFDY-VWLEEWHSEISDVLICD 217
            LA +      + VW+EEW S++S+V+  D
Sbjct: 202 TLARMGMVSESFHVWVEEWLSDLSEVIAAD 231

[Close]

BLAST of Lcy11g019320 vs. ExPASy TrEMBL
Match: A0A803LHG6 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-13
Identity = 56/177 (31.64%), Postives = 98/177 (55.37%), Query Frame = 0


Query: 44  HAVCSFQLLTIFFIANDFKRIRPRELKLNVDASVRPDSSEAGGGCVLRNADGEVLMAACL 103
           H++ + + LT     N +    P  +K+N +A++  +++  G G V+R+  G+V+ A CL
Sbjct: 192 HSISAVEPLT-----NQWCAPPPAIIKVNSNAALF-NTNHVGFGGVMRDNVGDVVAATCL 251

Query: 104 TLQRCWSVDLAEGWTLYEGVQLARQMDFSEFVVETDSLRLIKILHGDFQDVSEVGL-MDD 163
            +   + VD+ E   +   +++A +  F    +ETD+L+L   L     D +  G+ + D
Sbjct: 252 QIVGRFDVDVVEAMAMRHALKIAMESGFVRLCLETDNLKLHSHLKKSKYDQTTFGIVVKD 311

Query: 164 IRRLLHSCDSGKFLFTPRQGNKVAHALASLTFCYFDY-VWLEEWHSEISDVLICDAT 219
           I  L  SC S  F F  R+GNKVAH+LA L+  +    VWLEE+ S I ++++ D++
Sbjct: 312 ILTLASSCHSCVFEFVKREGNKVAHSLAKLSSTFDTLRVWLEEYPSGIHELVMADSS 362

[Close]

BLAST of Lcy11g019320 vs. ExPASy TrEMBL
Match: A0A6P9DSU8 (uncharacterized protein LOC118343802 OS=Juglans regia OX=51240 GN=LOC118343802 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.8e-13
Identity = 49/158 (31.01%), Postives = 84/158 (53.16%), Query Frame = 0


Query: 61  FKRIRPRELKLNVDASVRPDSSEAGGGCVLRNADGEVLMAACLTLQRCWSVDLAEGWTLY 120
           + R   R  K N DA+        G G V+R+ +GEV+   C   +   S  +AE   ++
Sbjct: 61  WSRPEGRSFKANFDAAFNMAEQIMGLGVVIRDCNGEVMAVKCANRKCRSSPFIAECSAMW 120

Query: 121 EGVQLARQMDFSEFVVETDSLRLIKILHGDFQDVSEVG-LMDDIRRLLHSCDSGKFLFTP 180
           E ++L +++DF +  +E D+  +I  ++ D +D S  G +++D+++ L    S K +FT 
Sbjct: 121 EAMELCKELDFWDVWLEGDAKDVIDAVNRDEEDESRYGHVVEDLKQSLKQSKSWKVVFTH 180

Query: 181 RQGNKVAHALASLTF-CYFDYVWLEEWHSEISDVLICD 217
           R GN+VAH LA +   C  D  W++E    I ++L  D
Sbjct: 181 RDGNEVAHHLAKMAIHCISDQYWIKEGPESIRNLLAID 218

[Close]

BLAST of Lcy11g019320 vs. NCBI nr
Match: XP_022150944.1 (uncharacterized protein LOC111018973 [Momordica charantia])

HSP 1 Score: 110.5 bits (275), Expect = 1.8e-20
Identity = 64/151 (42.38%), Postives = 87/151 (57.62%), Query Frame = 0


Query: 69  LKLNVDASVRPDSSEAGGGCVLRNADGEVLMAACLTLQRCWSVDLAEGWTLYEGVQLARQ 128
           LK+NVDA+ R +S  AG G ++R++ G V + A   L R   VD  EG+ +YEG+ LA +
Sbjct: 112 LKVNVDAAFRKESFVAGVGVIIRDSTGLVYLTAIRLLARASDVDWVEGFAVYEGILLAVE 171

Query: 129 MDFSEFVVETDSLRLIKILHGDFQDVSEVGLMDDIRRLLHSCDSGK--FLFTPRQGNKVA 188
             F  F +ETDSLR+  +L  D  D SEVG++  + +L  S  + +  F FT R GN  A
Sbjct: 172 AGFIRFQIETDSLRIFNLLTTDCVDDSEVGVLCSVIKLFLSSHAERVSFSFTHRNGNAXA 231

Query: 189 HALASLTFCY-FDYVWLEEWHSEISDVLICD 217
           H LA L        +W+EEW  EIS VL  D
Sbjct: 232 HLLAQLALTSPHLQIWVEEWPDEISSVLAVD 262

[Close]

BLAST of Lcy11g019320 vs. NCBI nr
Match: XP_010687479.1 (PREDICTED: uncharacterized protein LOC104901585 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 100.5 bits (249), Expect = 1.9e-17
Identity = 60/161 (37.27%), Postives = 91/161 (56.52%), Query Frame = 0


Query: 61  FKRIRPRELKLNVDASVRPDSSEAGGGCVLRNADGEVLMAACLTLQRCWSVDLAEGWTLY 120
           +K  R  + KLN DA++  D ++ G G V+R+  G+VL A C  ++    VD+AE     
Sbjct: 326 WKAPREGDYKLNTDAAMFAD-NQVGMGAVVRDFSGDVLAAMCCKMRGGDEVDIAEALCAR 385

Query: 121 EGVQLARQMDFSEFVVETDSLRLIKILHGDFQDVSEVG-LMDDIRRLLHSCDSGKFLFTP 180
            G+Q+A +  F   V+E D+L+L   L  + ++ S  G ++ DI+RL+H C S  F  T 
Sbjct: 386 RGLQIAMEAGFRSLVLEVDNLKLFSYLSRNKREASPFGFIVQDIQRLVHQCSSVSFSHTR 445

Query: 181 RQGNKVAHALASLTFCYFDY-VWLEEWHSEISDVLICDATL 220
           R+GN+VAH LA +        VWLEE   EI+ ++I D  L
Sbjct: 446 RKGNEVAHRLAKMCNSIDGLKVWLEEVPLEIAKIVIADIEL 485

[Close]

BLAST of Lcy11g019320 vs. NCBI nr
Match: KAF7845245.1 (transcription factor SCREAM2-like isoform X1 [Senna tora])

HSP 1 Score: 97.4 bits (241), Expect = 1.6e-16
Identity = 56/154 (36.36%), Postives = 89/154 (57.79%), Query Frame = 0


Query: 67  RELKLNVDASVRPDSSEAGGGCVLRNADGEVLMAACLTLQRCWSVDLAEGWTLYEGVQLA 126
           RE+K+NVDAS+     + G GCV+RN  G  L A    ++   S +L E +   EG++LA
Sbjct: 278 REMKVNVDASLL-KQGKGGIGCVVRNFQGRCLAAFAKRMKNIESAELLEAFAFLEGLELA 337

Query: 127 RQMDFSEFVVETDSLRLIKILHGDFQDVSEVG-LMDDIRRLLHSCDSGKFLFTPRQGNKV 186
           + +     ++E D+ ++  ++HG  Q++S +G L+DDIR+ + +    K  + PR  N V
Sbjct: 338 KNLRCDNIILEGDAKKVADLIHGSSQNLSHLGMLVDDIRKGMKNFSRVKVQWVPRNSNAV 397

Query: 187 AHALASLTFCYFD--YVWLEEWHSEISDVLICDA 218
           A  +A+   C  D   VWLE++   ISDVLI D+
Sbjct: 398 ADRIANFA-CNLDQSQVWLEDFPQFISDVLISDS 429

[Close]

BLAST of Lcy11g019320 vs. NCBI nr
Match: XP_021716820.1 (uncharacterized protein LOC110684687 [Chenopodium quinoa])

HSP 1 Score: 97.4 bits (241), Expect = 1.6e-16
Identity = 57/150 (38.00%), Postives = 89/150 (59.33%), Query Frame = 0


Query: 69  LKLNVDASVRPDSSEAGGGCVLRNADGEVLMAACLTLQRCWSVDLAEGWTLYEGVQLARQ 128
           +K+N DA++  D+S  G G V+R+A GEV++A CL L+  + VD+AE   L   +++A +
Sbjct: 149 IKINSDAAIF-DNSAVGLGGVMRDALGEVVVATCLCLRSKYEVDVAEALALRHSLRIALE 208

Query: 129 MDFSEFVVETDSLRLIKILHGDFQDVSEVGL-MDDIRRLLHSCDSGKFLFTPRQGNKVAH 188
            +F +  +ETD +++   L       + +G+ ++DI +L   C S  F F  R GN  AH
Sbjct: 209 SEFRKVCLETDCMKVFSHLTKGCAPATILGMVINDIMQLARGCQSCSFSFVKRSGNGAAH 268

Query: 189 ALASLTFCYFDY-VWLEEWHSEISDVLICD 217
           ALA L+  Y D  VW+EE  SEIS  ++ D
Sbjct: 269 ALAKLSSSYGDLRVWMEEVPSEISPFVMAD 297

[Close]

BLAST of Lcy11g019320 vs. NCBI nr
Match: KAF7802400.1 (uncharacterized protein G2W53_041511 [Senna tora])

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-16
Identity = 63/167 (37.72%), Postives = 94/167 (56.29%), Query Frame = 0


Query: 59  NDFKRIRP---RELKLNVDASVRPDSSEAGGGCVLRNADGEVLMAACLTLQRCWSVDLAE 118
           N+ K+ +P   R LKLNVDASVR D  +   GC++R+  G  L A    +  C+SV++AE
Sbjct: 600 NESKKWQPPSWRFLKLNVDASVR-DGGQTRVGCIIRDYMGRCLAAMTKEITGCYSVEMAE 659

Query: 119 GWTLYEGVQLARQMDFSEFVVETDSLRLIKILHGDFQDVSEVG-LMDDIRRLLHSCDSGK 178
              +YEG+ +A++M     +VE DS  +IK+L+G+  D + V  ++ DI +L  S  S  
Sbjct: 660 ALAVYEGMVVAKRMSILNVLVEGDSASVIKLLNGEGMDCTYVSFIIKDILQLCSSFRSYS 719

Query: 179 FLFTPRQGNKVAHALASLTFCYFD-----YVWLEEWHSEISDVLICD 217
           F +  R+ NKVAH LA     +        VWLE++ S I + L  D
Sbjct: 720 FNWVRREANKVAHILAHDPVAFPSDNSGILVWLEDYPSLICNALKSD 765

[Close]

BLAST of Lcy11g019320 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 70.1 bits (170), Expect = 2.5e-12
Identity = 44/132 (33.33%), Postives = 70/132 (53.03%), Query Frame = 0


Query: 69  LKLNVDASVRPDSSEAGGGCVLRNADGEVLMAACLTLQRCWSVDLAEGWTLYEGVQLARQ 128
           +K N DA+ + ++   G G +LRN  G VL      L R  +V  AE   L   V    +
Sbjct: 145 VKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALRWAVLTMSR 204

Query: 129 MDFSEFVVETDSLRLIKILHGDFQDVSEVGLMDDIRRLLHSCDSGKFLFTPRQGNKVAHA 188
            ++   + E+D+  L+ +L+ D    +    ++DI++LLH  +  KF FTPR GNKVA  
Sbjct: 205 FNYKRIIFESDAQALVNLLNSDDFWPTLQPALEDIQQLLHHFEEVKFEFTPRGGNKVADR 264

Query: 189 LA--SLTFCYFD 199
           +A  S++F  +D
Sbjct: 265 IARESISFSNYD 276

[Close]

BLAST of Lcy11g019320 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 2.8e-11
Identity = 46/132 (34.85%), Postives = 67/132 (50.76%), Query Frame = 0


Query: 69  LKLNVDASVRPDSSEAGGGCVLRNADGEVLMAACLTLQRCWSVDLAEGWTLYEGVQLARQ 128
           +K N DA+   D+   G G VLRN  GEV       L +  SV  AE   +   V    +
Sbjct: 428 VKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWAVLSLSR 487

Query: 129 MDFSEFVVETDSLRLIKILHGDFQDVSEVGLMDDIRRLLHSCDSGKFLFTPRQGNKVAHA 188
             ++  + E+DS  LI+IL+ D    S    + D++RLL      KF+F PR+GN +A  
Sbjct: 488 FQYNYVIFESDSQVLIEILNNDEIWPSLKPTIQDLQRLLSQFTEVKFVFIPREGNTLAER 547

Query: 189 LA--SLTFCYFD 199
           +A  SL+F  +D
Sbjct: 548 VARESLSFLNYD 559

The following BLAST results are available for this feature:

BLAST of Lcy11g019320 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g019320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBJ7	8.8e-21	42.38	uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1CIF1	4.7e-14	32.89	uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1C467	6.1e-14	36.00	uncharacterized protein LOC111007775 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A803LHG6	1.4e-13	31.64	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A6P9DSU8	8.8e-13	31.01	uncharacterized protein LOC118343802 OS=Juglans regia OX=51240 GN=LOC118343802 P...	[more]

BLAST of Lcy11g019320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150944.1	1.8e-20	42.38	uncharacterized protein LOC111018973 [Momordica charantia]	[more]
XP_010687479.1	1.9e-17	37.27	PREDICTED: uncharacterized protein LOC104901585 [Beta vulgaris subsp. vulgaris]	[more]
KAF7845245.1	1.6e-16	36.36	transcription factor SCREAM2-like isoform X1 [Senna tora]	[more]
XP_021716820.1	1.6e-16	38.00	uncharacterized protein LOC110684687 [Chenopodium quinoa]	[more]
KAF7802400.1	2.1e-16	37.72	uncharacterized protein G2W53_041511 [Senna tora]	[more]

BLAST of Lcy11g019320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34320.1	2.5e-12	33.33	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT4G29090.1	2.8e-11	34.85	Ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 72..192 e-value: 2.3E-24 score: 85.6
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 67..194 e-value: 1.0E-14 score: 56.7
None	No IPR available	PANTHER	PTHR47723	OS05G0353850 PROTEIN	coord: 62..207
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 71..190 e-value: 5.65809E-20 score: 80.0508
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 69..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g019320.1	Lcy11g019320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity