Lcy11g018730 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g018730
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr11: 45563189 .. 45564593 (-)
RNA-Seq Expression	Lcy11g018730
Synteny	Lcy11g018730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAATTGTATTAGATCGGCCAACTTCTCCATTTTGCTTAACGGGAGGCCAAGAGGTAAGATGTTTGCATCGAGAGGTCTTAGGCAAGGGGATCCTTTATCTCCATTCTTGTTCATTCTGGTGGTGGATGTTTTGAGTAGGATTGTCTCATCTGGGGTGGACAGAGGGGTGATCGAAGGCTTTAAGGTGGGCTCGAAAGGCATCCCCTTGTCTCATCTTCAATTTGCCGATGACACCCTTTTCTTTTGTTCGGCGAAGGAAGAGTCTTTCAGGAATTTAAATGGCTTCCTCTCCTTCTTTGAAGTTATATCTGGGCTCAAGATCAATCGCCAGAAAAGCTCTATTTTCGGGGTTAATTGTGAGATCTCTAAGCTGGGTTTTTGGGTGTCGTTAGTTGGGTGTGAGGTTGGTCAATTTCCTTGCTCCTACCTTGGCCTCCCCTTGGGAGGCAATCCGAAATTAGCGGTTTTTTGGAATCTAGTGGTGGAAAAGGTCCAAAAGAGATTGTCTTCTCGGAAGAAAGCCTTCTTCTCTAGGGGGGGGGGGGGGGGAGATTGACCTTGATTCAGTCTGTCTTGAGTGGGATCCCTCTCTACTTTCTTTCCCTTTTTATGCTTCCCTCGTCTGTGTGTAAGGCTTTGGAAAAGCTCATGAGGGACTTCTTGTGGGAAGGAGTGGATGGGTGTGGTGGGGCTCACCTGATTAGGTGGGATGTAGTTTCGAAGGCTAAGTTGGGGGATTAGGCATTGCTAACCTGAAGCTTCGTAATGAGGCCCTTTTAGGAAAATGGTTGTGGCACTCCTTTAATGAGCCAAATGCCCTCTAGTGGAAGGTGATTGAGAGCCTATATGGTCCGCACCCATTCGAGTGGGTTTCTAGTGGTAGGCCGAAAGGATCTAGTAAATACCTCTGGTTCGCTATTGCTTCGGGATTCCCTTTTTTCTTTCAGTTTATTAGTTGTTCTATTGGGGATGGCTCCATTACCTATTTTTGGGAGGATTTGTGGGTTGGTGATAAACCTTTGAGTGTTATGTTCCCCCGTCTTTACCAGTTGTCCGAGAATAAGTTGCATTCAGTAGCTTCGATCTTTCCTAGCTTCGATTTCTCTTCTCTTTCCCTTGGCTTTCGTCGCTCTCTCACCTATCGAGAGGCGACAAAGGTCGTCAGTCTTCTCTCTCTCTTGGCTGACCAGTCTTTTCGTCCTAAGAGAAGGGACAATAGATCCTGGATTTCAAACCCGTCTGAGGGTTTCTCTTGTGCCTCTTTTTTCCGTTCTCTCTCCTCTCCTATTCCTCCTCCAGGAGCCTCCATTTTCTCCTCTCTGTGGAAGGTCAAAATTCCCAAGAAAGTGAAGTTCTTTGCCTGTGAAGTTTTACATGGTCGGGTGAATACTCAGGATTAG

mRNA sequence

ATGTGGAATTGTATTAGATCGGCCAACTTCTCCATTTTGCTTAACGGGAGGCCAAGAGGTAAGATGTTTGCATCGAGAGGTCTTAGGCAAGGGGATCCTTTATCTCCATTCTTGTTCATTCTGGTGGTGGATGTTTTGAGTAGGATTGTCTCATCTGGGGTGGACAGAGGGGTGATCGAAGGCTTTAAGGTGGGCTCGAAAGGCATCCCCTTGTCTCATCTTCAATTTGCCGATGACACCCTTTTCTTTTGTTCGGCGAAGGAAGAGTCTTTCAGGAATTTAAATGGCTTCCTCTCCTTCTTTGAAGTTATATCTGGGCTCAAGATCAATCGCCAGAAAAGCTCTATTTTCGGGGTTAATTGTGAGATCTCTAAGCTGGGTTTTTGGGTGTCGTTAGTTGGGTGTGAGTGGAAGGTGATTGAGAGCCTATATGGTCCGCACCCATTCGAGTGGGTTTCTAGTGGTAGGCCGAAAGGATCTAGTAAATACCTCTGGTTCGCTATTGCTTCGGGATTCCCTTTTTTCTTTCAGTTTATTAGTTGTTCTATTGGGGATGGCTCCATTACCTATTTTTGGGAGGATTTGTGGGTTGGTGATAAACCTTTGAGTGTTATGTTCCCCCGTCTTTACCAGTTGTCCGAGAATAAGTTGCATTCAGTAGCTTCGATCTTTCCTAGCTTCGATTTCTCTTCTCTTTCCCTTGGCTTTCGTCGCTCTCTCACCTATCGAGAGGCGACAAAGGTCGTCAGTCTTCTCTCTCTCTTGGCTGACCAGTCTTTTCGTCCTAAGAGAAGGGACAATAGATCCTGGATTTCAAACCCGTCTGAGGGTTTCTCTTGTGCCTCTTTTTTCCGTTCTCTCTCCTCTCCTATTCCTCCTCCAGGAGCCTCCATTTTCTCCTCTCTGTGGAAGGTCAAAATTCCCAAGAAAGTGAAGTTCTTTGCCTGTGAAGTTTTACATGGTCGGGTGAATACTCAGGATTAG

Coding sequence (CDS)

ATGTGGAATTGTATTAGATCGGCCAACTTCTCCATTTTGCTTAACGGGAGGCCAAGAGGTAAGATGTTTGCATCGAGAGGTCTTAGGCAAGGGGATCCTTTATCTCCATTCTTGTTCATTCTGGTGGTGGATGTTTTGAGTAGGATTGTCTCATCTGGGGTGGACAGAGGGGTGATCGAAGGCTTTAAGGTGGGCTCGAAAGGCATCCCCTTGTCTCATCTTCAATTTGCCGATGACACCCTTTTCTTTTGTTCGGCGAAGGAAGAGTCTTTCAGGAATTTAAATGGCTTCCTCTCCTTCTTTGAAGTTATATCTGGGCTCAAGATCAATCGCCAGAAAAGCTCTATTTTCGGGGTTAATTGTGAGATCTCTAAGCTGGGTTTTTGGGTGTCGTTAGTTGGGTGTGAGTGGAAGGTGATTGAGAGCCTATATGGTCCGCACCCATTCGAGTGGGTTTCTAGTGGTAGGCCGAAAGGATCTAGTAAATACCTCTGGTTCGCTATTGCTTCGGGATTCCCTTTTTTCTTTCAGTTTATTAGTTGTTCTATTGGGGATGGCTCCATTACCTATTTTTGGGAGGATTTGTGGGTTGGTGATAAACCTTTGAGTGTTATGTTCCCCCGTCTTTACCAGTTGTCCGAGAATAAGTTGCATTCAGTAGCTTCGATCTTTCCTAGCTTCGATTTCTCTTCTCTTTCCCTTGGCTTTCGTCGCTCTCTCACCTATCGAGAGGCGACAAAGGTCGTCAGTCTTCTCTCTCTCTTGGCTGACCAGTCTTTTCGTCCTAAGAGAAGGGACAATAGATCCTGGATTTCAAACCCGTCTGAGGGTTTCTCTTGTGCCTCTTTTTTCCGTTCTCTCTCCTCTCCTATTCCTCCTCCAGGAGCCTCCATTTTCTCCTCTCTGTGGAAGGTCAAAATTCCCAAGAAAGTGAAGTTCTTTGCCTGTGAAGTTTTACATGGTCGGGTGAATACTCAGGATTAG

Protein sequence

MWNCIRSANFSILLNGRPRGKMFASRGLRQGDPLSPFLFILVVDVLSRIVSSGVDRGVIEGFKVGSKGIPLSHLQFADDTLFFCSAKEESFRNLNGFLSFFEVISGLKINRQKSSIFGVNCEISKLGFWVSLVGCEWKVIESLYGPHPFEWVSSGRPKGSSKYLWFAIASGFPFFFQFISCSIGDGSITYFWEDLWVGDKPLSVMFPRLYQLSENKLHSVASIFPSFDFSSLSLGFRRSLTYREATKVVSLLSLLADQSFRPKRRDNRSWISNPSEGFSCASFFRSLSSPIPPPGASIFSSLWKVKIPKKVKFFACEVLHGRVNTQD

Homology

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BLAST of Lcy11g018730 vs. ExPASy Swiss-Prot
Match: P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.2e-12
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 13 LLNGRPRGKMFASRGLRQGDPLSPFLFILVVDVLSRIVSSGVDRGVIEGFKVGSKGIPLS 72
          ++NG P+G +  SRGLRQGDPLSP+LFIL  +VLS +     ++G + G +V +    ++
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72

Query: 73 HLQFADDT 81
          HL FADDT
Sbjct: 73 HLLFADDT 80

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BLAST of Lcy11g018730 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.6e-10
Identity = 42/110 (38.18%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 11  SILLNGRPRGKMFASRGLRQGDPLSPFLFILVVDVLSRIVSSGVDRGVIEGFKVGSKGIP 70
           +I+LNG+         G RQG PLSP LF +V++VL+R +    +   I+G ++G + + 
Sbjct: 640 NIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKE---IKGIQLGKEEVK 699

Query: 71  LSHLQFADDTLFFCSAKEESFRNLNGFLSFFEVISGLKINRQKSSIFGVN 121
           LS   FADD + +      S +NL   +S F  +SG KIN QKS  F  N
Sbjct: 700 LS--LFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYN 744

[Close]

BLAST of Lcy11g018730 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-08
Identity = 37/107 (34.58%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 11  SILLNGRPRGKMFASRGLRQGDPLSPFLFILVVDVLSRIVSSGVDRGVIEGFKVGSKGIP 70
           +I +NG     +    G RQG PLSP+LF +V++VL+R +    +   I+G ++G + + 
Sbjct: 647 NIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKE---IKGIQIGKEEVK 706

Query: 71  LSHLQFADDTLFFCSAKEESFRNLNGFLSFFEVISGLKINRQKSSIF 118
           +S L  ADD + + S  + S R L   ++ F  + G KIN  KS  F
Sbjct: 707 ISLL--ADDMIVYISDPKNSTRELLNLINSFGEVVGYKINSNKSMAF 748

[Close]

BLAST of Lcy11g018730 vs. ExPASy Swiss-Prot
Match: P08548 (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-07
Identity = 38/107 (35.51%), Postives = 55/107 (51.40%), Query Frame = 0


Query: 11  SILLNGRPRGKMFASRGLRQGDPLSPFLFILVVDVLSRIVSSGVDRGVIEGFKVGSKGIP 70
           +I+LNG          G RQG PLSP LF +V++VL+  +    +   I+G  +GS+ I 
Sbjct: 639 NIILNGVKLKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAIR---EEKAIKGIHIGSEEIK 698

Query: 71  LSHLQFADDTLFFCSAKEESFRNLNGFLSFFEVISGLKINRQKSSIF 118
           LS   FADD + +     +S   L   +  +  +SG KIN  KS  F
Sbjct: 699 LS--LFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAF 740

[Close]

BLAST of Lcy11g018730 vs. ExPASy Swiss-Prot
Match: P16423 (Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 3.3e-05
Identity = 35/95 (36.84%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 25  SRGLRQGDPLSPFLFILVVDVLSRIVSSGVDRGVIEGFKVGSKGIPLSHLQFADDTLFFC 84
           +RG++QGDPLSP LF LV+D L R + S +      G KVG+     +   FADD + F 
Sbjct: 536 ARGVKQGDPLSPILFNLVMDRLLRTLPSEI------GAKVGN--AITNAAAFADDLVLFA 595

Query: 85  SAKEESFRNLNGFLSFFEVISGLKINRQKSSIFGV 120
             +      L+  L F  ++ GLK+N  K    G+
Sbjct: 596 ETRMGLQVLLDKTLDFLSIV-GLKLNADKCFTVGI 621

[Close]

BLAST of Lcy11g018730 vs. ExPASy TrEMBL
Match: A0A6J1DFI2 (uncharacterized protein LOC111019624 OS=Momordica charantia OX=3673 GN=LOC111019624 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 5.2e-78
Identity = 184/441 (41.72%), Postives = 226/441 (51.25%), Query Frame = 0


Query: 1   MWNCIRSANFSILLNGRPRGKMFASRGLRQGDPLSPFLFILVVDVLSRIVSSGVDRGVIE 60
           +WNCIRS N+SIL+NGRPRGK+ ASRGLRQGDPLSPFLFILVVD+LSR++S GV++  +E
Sbjct: 14  IWNCIRSVNYSILVNGRPRGKILASRGLRQGDPLSPFLFILVVDILSRLISVGVEKEALE 73

Query: 61  GFKVGSKGIPLSHLQFADDTLFFCSAKEESFRNLNGFLSFFEVISGLKINRQKSSIFGVN 120
            F+V  +   LSHLQFAD+TL FCS    +F NLNG L FFE ISGLKINR KSS+ G+N
Sbjct: 74  AFEVEREKACLSHLQFADNTLLFCSGNFRAFENLNGLLGFFEAISGLKINRGKSSLLGIN 133

Query: 121 CEISKLGFWVSL------------------------------------------------ 180
           CE  KL  W +L                                                
Sbjct: 134 CEDGKLSEWATLFQKCLSSWKKAFFSKGGRLTLIQSVLRGIPNYYLSLFRIPVKVIEGLE 193

Query: 181 -----------------------------------VG----------CEW---------- 240
                                              VG           +W          
Sbjct: 194 KIMRDFLWEGVEEGGGAHLVNWKEVSKPLEAGGLGVGNLRLRNEAFLAKWLWRFFHEPHA 253

Query: 241 ---KVIESLYGPHPFEWVSSGRPKGSSKYLWFAIASGFPFFFQFISCSIGDGSITYFWED 300
              K+I S Y  HP +W+ +G  K S+   W AIAS FP F   +  S+GDG   YFWED
Sbjct: 254 LWRKIIVSKYERHPSDWILAGGSKVSNFNPWKAIASCFPVFSLSLRVSVGDGLNAYFWED 313

Query: 301 LWVGDKPLSVMFPRLYQLSENKLHSVASIFP-SFDFSSLSLGFRRSLTYREATKVVSLLS 322
            W+G+KPLS+ FPR+Y LSE KL SVA +     + SS+SLG  RSLT  E+ ++ +LL 
Sbjct: 314 TWLGNKPLSLAFPRIYFLSEKKLLSVAEVLNFGEEDSSISLGLSRSLTDPESLEIAALLD 373

[Close]

BLAST of Lcy11g018730 vs. ExPASy TrEMBL
Match: A0A438BXW9 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_209 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.0e-53
Identity = 136/350 (38.86%), Postives = 188/350 (53.71%), Query Frame = 0


Query: 4   CIRSANFSILLNGRPRGKMFASRGLRQGDPLSPFLFILVVDVLSRIVSSGVDRGVIEGFK 63
           C+ S++F+IL+NG  +G + ASRGLRQGDPLSPFLF LV DVLSR++    + G+ EGF 
Sbjct: 340 CLSSSSFAILVNGNAKGWVKASRGLRQGDPLSPFLFTLVADVLSRMLFRAEETGLTEGFS 399

Query: 64  VGSKGIPLSHLQFADDTLFFCSAKEESFRNLNGFLSFFEVISGLKINRQKSSIFG--VNC 123
           VG     +S LQFADDT+FF  A  E  +NL   L  F  +SGLKIN +KS+I G  +  
Sbjct: 400 VGRDRTRVSLLQFADDTIFFSKASMEHLQNLKIILLVFGQVSGLKINLEKSTISGLPLGG 459

Query: 124 EISKLGFWVSLVG---------------CEWKVI---------ESLYGPHPFEWVSSGRP 183
               +GFW  +V                  W+V+          S+YG HP  W ++   
Sbjct: 460 NPKTIGFWDPVVERISRRLDGEGKKDHLVRWEVVSRPKELGGYRSIYGTHPNGWDANMVV 519

Query: 184 KGSSKYLWFAIASGFPFFFQFISCSIGDGSITYFWEDLWVGDKPLSVMFPRLYQLSENKL 243
           + S +  W AIA  F  F  F+   +G+G    FWEDLW G++ L   F  LY++   K 
Sbjct: 520 RWSHRCPWKAIAQVFQEFSPFVRLVVGNGERIRFWEDLWWGNQSLCSQFADLYRVISVKN 579

Query: 244 HSVASIFPSFDFSSLSLGFRRSLTYREATKVVSLLSLLADQSFRPKRRDNRSWISNPSEG 303
            +V+++  +    + +L FRR+LT  E   +  L+S L+   F P   D+R+W  + S  
Sbjct: 580 LTVSNVLGNSFPLAWNLNFRRNLTDSEIDLLQRLMSSLSSVRFSPSLADSRAWSLSSSGL 639

Query: 304 FSCASFFRSLSSPIPPPGASIFSSLWKVKIPKKVKFFACEVLHGRVNTQD 328
           F+  SFF +LS    P        LW  K+P KVK  A  V HG+VNT D
Sbjct: 640 FTVKSFFLALSKVSNPILFLPAKFLWSSKVPSKVKALAWIVAHGKVNTND 689

[Close]

BLAST of Lcy11g018730 vs. ExPASy TrEMBL
Match: A0A438DSJ8 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_255 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.0e-53
Identity = 136/343 (39.65%), Postives = 186/343 (54.23%), Query Frame = 0


Query: 1   MWNCIRSANFSILLNGRPRGKMFASRGLRQGDPLSPFLFILVVDVLSRIVSSGVDRGVIE 60
           M  C+ S +++IL+NG  +G + ASRGLRQGDPLSPFLF LV DVLSR++    +R ++E
Sbjct: 395 MSGCLSSVSYAILVNGSAKGWVKASRGLRQGDPLSPFLFTLVADVLSRMLMRAEERNMME 454

Query: 61  GFKVGSKGIPLSHLQFADDTLFFCSAKEESFRNLNGFLSFFEVISGLKINRQKSSIFGVN 120
           GF+VG     +SHLQFADDT+FF +++EE  + L   L  F  ISGLK+N  KSSI+G+N
Sbjct: 455 GFRVGRNRTRVSHLQFADDTIFFSNSREEELQTLKSLLLVFGHISGLKVNLNKSSIYGIN 514

Query: 121 CEISKLGFWVSLVGCEWKVIESLYGPHPFEWVSSGRPKG---------------SSKYLW 180
            + + L   V ++ C+      LY   P      G PK                S +  W
Sbjct: 515 LDQAHLSRLVVMLDCKASGWPILYLGLPL----GGNPKACGFWDPVIERISIRWSHQCPW 574

Query: 181 FAIASGFPFFFQFISCSIGDGSITYFWEDLWVGDKPLSVMFPRLYQLSENKLHSVASIF- 240
            AIA  F  F       +G+G    FWEDLW G++PL   +PRL+++  +K  S+ S+  
Sbjct: 575 KAIAQVFQGFSLITRYVVGNGERIRFWEDLWWGNQPLGTQYPRLFRVVVDKNISIYSVLG 634

Query: 241 PSFDFSSLSLGFRRSLTYREATKVVSLLSLLADQSFRPKRRDNRSWISNPSEGFSCASFF 300
           PS  F S +L FRR+L+  E   +  L+  L D    P   D R W  + S  FS  SFF
Sbjct: 635 PSRPF-SWNLNFRRNLSNSEIEDLEGLMRSLDDLYLSPSVPDARLWPLSSSGLFSVKSFF 694

Query: 301 RSLSSPIPPPGASIFSSLWKVKIPKKVKFFACEVLHGRVNTQD 328
            +LS     P       +W  ++P KVK F   V H +VNT D
Sbjct: 695 LTLSQSSGSPQNFPSKFVWNSQVPFKVKSFVWLVAHKKVNTND 732

[Close]

BLAST of Lcy11g018730 vs. ExPASy TrEMBL
Match: A5B7Z9 (Reverse transcriptase domain-containing protein (Fragment) OS=Vitis vinifera OX=29760 GN=VITISV_022758 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 5.4e-51
Identity = 129/352 (36.65%), Postives = 184/352 (52.27%), Query Frame = 0


Query: 1   MWNCIRSANFSILLNGRPRGKMFASRGLRQGDPLSPFLFILVVDVLSRIVSSGVDRGVIE 60
           M  C+ S +++IL+N   +G + ASRGLRQGDPLSPFLF +V DVLSR++    +R ++E
Sbjct: 452 MRGCLSSVSYAILVNDNAKGWVKASRGLRQGDPLSPFLFTIVADVLSRMLLKAEERSLLE 511

Query: 61  GFKVGSKGIPLSHLQFADDTLFFCSAKEESFRNLNGFLSFFEVISGLKINRQKSSIFGVN 120
           GF+VG     +SHLQFADDT+FF ++ EE  + L   L  F  +SGLK+N  KS++FG+N
Sbjct: 512 GFRVGRNRCRVSHLQFADDTIFFANSSEEELQTLKSLLLVFGQVSGLKVNLDKSNLFGIN 571

Query: 121 CEISKLG----FWV-SLVGCEWK--------------------VIESLYGPHPFEWVSSG 180
            +   L      W+  L GC+                      VI  +YG H   W ++ 
Sbjct: 572 LDQDHLSRFLLXWLQKLRGCKXSFFGQGLGKAKETILLDGMLCVILXIYGTHSNGWDANT 631

Query: 181 RPKGSSKYLWFAIASGFPFFFQFISCSIGDGSITYFWEDLWVGDKPLSVMFPRLYQLSEN 240
             + S +  W AIA  F  F ++    +G+G    FWEDLW GD+     +PRL+++  +
Sbjct: 632 LVRWSHRCPWKAIAQVFQDFSKYTRLVVGNGERIRFWEDLWWGDQIFKDQYPRLFRVVMD 691

Query: 241 KLHSVASIFPSFDFSSLSLGFRRSLTYREATKVVSLLSLLADQSFRPKRRDNRSWISNPS 300
           K   + SI  S    S +  FRRSLT  E   +  L+  +   +      D RSW    S
Sbjct: 692 KSVPIYSILGSDRPFSWNFNFRRSLTDYEIKDLERLMRSIDCMNLFTSASDARSWSLLSS 751

Query: 301 EGFSCASFFRSLSSPIPPPGASIFSSLWKVKIPKKVKFFACEVLHGRVNTQD 328
             F+  SFF +LS          +  LWK ++P KVK F   V H +VNT +
Sbjct: 752 GLFTVKSFFTALSQTSYSFPLIPYKFLWKSQVPFKVKAFVWLVAHKKVNTNN 803

[Close]

BLAST of Lcy11g018730 vs. ExPASy TrEMBL
Match: A5BAF8 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_042568 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.2e-50
Identity = 143/397 (36.02%), Postives = 197/397 (49.62%), Query Frame = 0


Query: 1   MWNCIRSANFSILLNGRPRGKMFASRGLRQGDPLSPFLFILVVDVLSRIVSSGVDRGVIE 60
           M  C  S +++IL+NG  +G + ASRGLRQGDPLSPFLF LV DVLSR++    +R ++E
Sbjct: 132 MSGCFSSVSYAILVNGSAKGWVKASRGLRQGDPLSPFLFTLVADVLSRMLMRAEERNMME 191

Query: 61  GFKVGSKGIPLSHLQFADDTLFFCSAK--EESFRNLNGFLSFFEVISGLKINRQKSSIFG 120
           GF+VG     +SHLQFADDT+FF +++  EE  + L   L  F  ISGLK+N  KS I+G
Sbjct: 192 GFRVGRNRTRVSHLQFADDTIFFSNSREEEEELQTLKSLLLVFGHISGLKVNLDKSRIYG 251

Query: 121 VNCE------------------------------------------------ISKLGF-- 180
           +N +                                                I  LGF  
Sbjct: 252 INLDQAHLSRLVVMLDLAAKIEKLQRDFLWSGVGEGKRDHLVRWDVVCKPKTIGGLGFGN 311

Query: 181 --W--VSLVGCEW-------------KVIESLYGPHPFEWVSSGRPKGSSKYLWFAIASG 240
             W  ++L+G +W             +VI S+YG H   W ++   + S +Y W AIA  
Sbjct: 312 ISWRNLALLG-KWLWRYPREGSALWHQVILSIYGSHSNGWNANTLVRWSHRYPWKAIAQV 371

Query: 241 FPFFFQFISCSIGDGSITYFWEDLWVGDKPLSVMFPRLYQLSENKLHSVASIF-PSFDFS 300
           F  F  F    +G+G    FWEDLW GD+PL   +PRL+++  +K   ++S+  PS  F 
Sbjct: 372 FQGFSLFTRYVVGNGERIRFWEDLWWGDQPLGTQYPRLFRVVMDKNIYISSVLGPSRPF- 431

Query: 301 SLSLGFRRSLTYREATKVVSLLSLLADQSFRPKRRDNRSWISNPSEGFSCASFFRSLSSP 328
           S +L FRR+L+  E   +  L+  L D    P   D R W  + S  FS  SFF +LS  
Sbjct: 432 SWNLNFRRNLSDSEIEDLEGLMRSLDDLYLSPSVPDARLWPLSSSRLFSIKSFFLALSQS 491

[Close]

BLAST of Lcy11g018730 vs. NCBI nr
Match: XP_022151711.1 (uncharacterized protein LOC111019624 [Momordica charantia])

HSP 1 Score: 301.2 bits (770), Expect = 1.1e-77
Identity = 184/441 (41.72%), Postives = 226/441 (51.25%), Query Frame = 0


Query: 1   MWNCIRSANFSILLNGRPRGKMFASRGLRQGDPLSPFLFILVVDVLSRIVSSGVDRGVIE 60
           +WNCIRS N+SIL+NGRPRGK+ ASRGLRQGDPLSPFLFILVVD+LSR++S GV++  +E
Sbjct: 14  IWNCIRSVNYSILVNGRPRGKILASRGLRQGDPLSPFLFILVVDILSRLISVGVEKEALE 73

Query: 61  GFKVGSKGIPLSHLQFADDTLFFCSAKEESFRNLNGFLSFFEVISGLKINRQKSSIFGVN 120
            F+V  +   LSHLQFAD+TL FCS    +F NLNG L FFE ISGLKINR KSS+ G+N
Sbjct: 74  AFEVEREKACLSHLQFADNTLLFCSGNFRAFENLNGLLGFFEAISGLKINRGKSSLLGIN 133

Query: 121 CEISKLGFWVSL------------------------------------------------ 180
           CE  KL  W +L                                                
Sbjct: 134 CEDGKLSEWATLFQKCLSSWKKAFFSKGGRLTLIQSVLRGIPNYYLSLFRIPVKVIEGLE 193

Query: 181 -----------------------------------VG----------CEW---------- 240
                                              VG           +W          
Sbjct: 194 KIMRDFLWEGVEEGGGAHLVNWKEVSKPLEAGGLGVGNLRLRNEAFLAKWLWRFFHEPHA 253

Query: 241 ---KVIESLYGPHPFEWVSSGRPKGSSKYLWFAIASGFPFFFQFISCSIGDGSITYFWED 300
              K+I S Y  HP +W+ +G  K S+   W AIAS FP F   +  S+GDG   YFWED
Sbjct: 254 LWRKIIVSKYERHPSDWILAGGSKVSNFNPWKAIASCFPVFSLSLRVSVGDGLNAYFWED 313

Query: 301 LWVGDKPLSVMFPRLYQLSENKLHSVASIFP-SFDFSSLSLGFRRSLTYREATKVVSLLS 322
            W+G+KPLS+ FPR+Y LSE KL SVA +     + SS+SLG  RSLT  E+ ++ +LL 
Sbjct: 314 TWLGNKPLSLAFPRIYFLSEKKLLSVAEVLNFGEEDSSISLGLSRSLTDPESLEIAALLD 373

[Close]

BLAST of Lcy11g018730 vs. NCBI nr
Match: RVW15777.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 219.5 bits (558), Expect = 4.1e-53
Identity = 136/350 (38.86%), Postives = 188/350 (53.71%), Query Frame = 0


Query: 4   CIRSANFSILLNGRPRGKMFASRGLRQGDPLSPFLFILVVDVLSRIVSSGVDRGVIEGFK 63
           C+ S++F+IL+NG  +G + ASRGLRQGDPLSPFLF LV DVLSR++    + G+ EGF 
Sbjct: 340 CLSSSSFAILVNGNAKGWVKASRGLRQGDPLSPFLFTLVADVLSRMLFRAEETGLTEGFS 399

Query: 64  VGSKGIPLSHLQFADDTLFFCSAKEESFRNLNGFLSFFEVISGLKINRQKSSIFG--VNC 123
           VG     +S LQFADDT+FF  A  E  +NL   L  F  +SGLKIN +KS+I G  +  
Sbjct: 400 VGRDRTRVSLLQFADDTIFFSKASMEHLQNLKIILLVFGQVSGLKINLEKSTISGLPLGG 459

Query: 124 EISKLGFWVSLVG---------------CEWKVI---------ESLYGPHPFEWVSSGRP 183
               +GFW  +V                  W+V+          S+YG HP  W ++   
Sbjct: 460 NPKTIGFWDPVVERISRRLDGEGKKDHLVRWEVVSRPKELGGYRSIYGTHPNGWDANMVV 519

Query: 184 KGSSKYLWFAIASGFPFFFQFISCSIGDGSITYFWEDLWVGDKPLSVMFPRLYQLSENKL 243
           + S +  W AIA  F  F  F+   +G+G    FWEDLW G++ L   F  LY++   K 
Sbjct: 520 RWSHRCPWKAIAQVFQEFSPFVRLVVGNGERIRFWEDLWWGNQSLCSQFADLYRVISVKN 579

Query: 244 HSVASIFPSFDFSSLSLGFRRSLTYREATKVVSLLSLLADQSFRPKRRDNRSWISNPSEG 303
            +V+++  +    + +L FRR+LT  E   +  L+S L+   F P   D+R+W  + S  
Sbjct: 580 LTVSNVLGNSFPLAWNLNFRRNLTDSEIDLLQRLMSSLSSVRFSPSLADSRAWSLSSSGL 639

Query: 304 FSCASFFRSLSSPIPPPGASIFSSLWKVKIPKKVKFFACEVLHGRVNTQD 328
           F+  SFF +LS    P        LW  K+P KVK  A  V HG+VNT D
Sbjct: 640 FTVKSFFLALSKVSNPILFLPAKFLWSSKVPSKVKALAWIVAHGKVNTND 689

[Close]

BLAST of Lcy11g018730 vs. NCBI nr
Match: RVW38475.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 219.5 bits (558), Expect = 4.1e-53
Identity = 136/343 (39.65%), Postives = 186/343 (54.23%), Query Frame = 0


Query: 1   MWNCIRSANFSILLNGRPRGKMFASRGLRQGDPLSPFLFILVVDVLSRIVSSGVDRGVIE 60
           M  C+ S +++IL+NG  +G + ASRGLRQGDPLSPFLF LV DVLSR++    +R ++E
Sbjct: 395 MSGCLSSVSYAILVNGSAKGWVKASRGLRQGDPLSPFLFTLVADVLSRMLMRAEERNMME 454

Query: 61  GFKVGSKGIPLSHLQFADDTLFFCSAKEESFRNLNGFLSFFEVISGLKINRQKSSIFGVN 120
           GF+VG     +SHLQFADDT+FF +++EE  + L   L  F  ISGLK+N  KSSI+G+N
Sbjct: 455 GFRVGRNRTRVSHLQFADDTIFFSNSREEELQTLKSLLLVFGHISGLKVNLNKSSIYGIN 514

Query: 121 CEISKLGFWVSLVGCEWKVIESLYGPHPFEWVSSGRPKG---------------SSKYLW 180
            + + L   V ++ C+      LY   P      G PK                S +  W
Sbjct: 515 LDQAHLSRLVVMLDCKASGWPILYLGLPL----GGNPKACGFWDPVIERISIRWSHQCPW 574

Query: 181 FAIASGFPFFFQFISCSIGDGSITYFWEDLWVGDKPLSVMFPRLYQLSENKLHSVASIF- 240
            AIA  F  F       +G+G    FWEDLW G++PL   +PRL+++  +K  S+ S+  
Sbjct: 575 KAIAQVFQGFSLITRYVVGNGERIRFWEDLWWGNQPLGTQYPRLFRVVVDKNISIYSVLG 634

Query: 241 PSFDFSSLSLGFRRSLTYREATKVVSLLSLLADQSFRPKRRDNRSWISNPSEGFSCASFF 300
           PS  F S +L FRR+L+  E   +  L+  L D    P   D R W  + S  FS  SFF
Sbjct: 635 PSRPF-SWNLNFRRNLSNSEIEDLEGLMRSLDDLYLSPSVPDARLWPLSSSGLFSVKSFF 694

Query: 301 RSLSSPIPPPGASIFSSLWKVKIPKKVKFFACEVLHGRVNTQD 328
            +LS     P       +W  ++P KVK F   V H +VNT D
Sbjct: 695 LTLSQSSGSPQNFPSKFVWNSQVPFKVKSFVWLVAHKKVNTND 732

[Close]

BLAST of Lcy11g018730 vs. NCBI nr
Match: CAN59965.1 (hypothetical protein VITISV_022758, partial [Vitis vinifera])

HSP 1 Score: 211.5 bits (537), Expect = 1.1e-50
Identity = 129/352 (36.65%), Postives = 184/352 (52.27%), Query Frame = 0


Query: 1   MWNCIRSANFSILLNGRPRGKMFASRGLRQGDPLSPFLFILVVDVLSRIVSSGVDRGVIE 60
           M  C+ S +++IL+N   +G + ASRGLRQGDPLSPFLF +V DVLSR++    +R ++E
Sbjct: 452 MRGCLSSVSYAILVNDNAKGWVKASRGLRQGDPLSPFLFTIVADVLSRMLLKAEERSLLE 511

Query: 61  GFKVGSKGIPLSHLQFADDTLFFCSAKEESFRNLNGFLSFFEVISGLKINRQKSSIFGVN 120
           GF+VG     +SHLQFADDT+FF ++ EE  + L   L  F  +SGLK+N  KS++FG+N
Sbjct: 512 GFRVGRNRCRVSHLQFADDTIFFANSSEEELQTLKSLLLVFGQVSGLKVNLDKSNLFGIN 571

Query: 121 CEISKLG----FWV-SLVGCEWK--------------------VIESLYGPHPFEWVSSG 180
            +   L      W+  L GC+                      VI  +YG H   W ++ 
Sbjct: 572 LDQDHLSRFLLXWLQKLRGCKXSFFGQGLGKAKETILLDGMLCVILXIYGTHSNGWDANT 631

Query: 181 RPKGSSKYLWFAIASGFPFFFQFISCSIGDGSITYFWEDLWVGDKPLSVMFPRLYQLSEN 240
             + S +  W AIA  F  F ++    +G+G    FWEDLW GD+     +PRL+++  +
Sbjct: 632 LVRWSHRCPWKAIAQVFQDFSKYTRLVVGNGERIRFWEDLWWGDQIFKDQYPRLFRVVMD 691

Query: 241 KLHSVASIFPSFDFSSLSLGFRRSLTYREATKVVSLLSLLADQSFRPKRRDNRSWISNPS 300
           K   + SI  S    S +  FRRSLT  E   +  L+  +   +      D RSW    S
Sbjct: 692 KSVPIYSILGSDRPFSWNFNFRRSLTDYEIKDLERLMRSIDCMNLFTSASDARSWSLLSS 751

Query: 301 EGFSCASFFRSLSSPIPPPGASIFSSLWKVKIPKKVKFFACEVLHGRVNTQD 328
             F+  SFF +LS          +  LWK ++P KVK F   V H +VNT +
Sbjct: 752 GLFTVKSFFTALSQTSYSFPLIPYKFLWKSQVPFKVKAFVWLVAHKKVNTNN 803

[Close]

BLAST of Lcy11g018730 vs. NCBI nr
Match: CAN69913.1 (hypothetical protein VITISV_042568 [Vitis vinifera])

HSP 1 Score: 210.3 bits (534), Expect = 2.5e-50
Identity = 143/397 (36.02%), Postives = 197/397 (49.62%), Query Frame = 0


Query: 1   MWNCIRSANFSILLNGRPRGKMFASRGLRQGDPLSPFLFILVVDVLSRIVSSGVDRGVIE 60
           M  C  S +++IL+NG  +G + ASRGLRQGDPLSPFLF LV DVLSR++    +R ++E
Sbjct: 132 MSGCFSSVSYAILVNGSAKGWVKASRGLRQGDPLSPFLFTLVADVLSRMLMRAEERNMME 191

Query: 61  GFKVGSKGIPLSHLQFADDTLFFCSAK--EESFRNLNGFLSFFEVISGLKINRQKSSIFG 120
           GF+VG     +SHLQFADDT+FF +++  EE  + L   L  F  ISGLK+N  KS I+G
Sbjct: 192 GFRVGRNRTRVSHLQFADDTIFFSNSREEEEELQTLKSLLLVFGHISGLKVNLDKSRIYG 251

Query: 121 VNCE------------------------------------------------ISKLGF-- 180
           +N +                                                I  LGF  
Sbjct: 252 INLDQAHLSRLVVMLDLAAKIEKLQRDFLWSGVGEGKRDHLVRWDVVCKPKTIGGLGFGN 311

Query: 181 --W--VSLVGCEW-------------KVIESLYGPHPFEWVSSGRPKGSSKYLWFAIASG 240
             W  ++L+G +W             +VI S+YG H   W ++   + S +Y W AIA  
Sbjct: 312 ISWRNLALLG-KWLWRYPREGSALWHQVILSIYGSHSNGWNANTLVRWSHRYPWKAIAQV 371

Query: 241 FPFFFQFISCSIGDGSITYFWEDLWVGDKPLSVMFPRLYQLSENKLHSVASIF-PSFDFS 300
           F  F  F    +G+G    FWEDLW GD+PL   +PRL+++  +K   ++S+  PS  F 
Sbjct: 372 FQGFSLFTRYVVGNGERIRFWEDLWWGDQPLGTQYPRLFRVVMDKNIYISSVLGPSRPF- 431

Query: 301 SLSLGFRRSLTYREATKVVSLLSLLADQSFRPKRRDNRSWISNPSEGFSCASFFRSLSSP 328
           S +L FRR+L+  E   +  L+  L D    P   D R W  + S  FS  SFF +LS  
Sbjct: 432 SWNLNFRRNLSDSEIEDLEGLMRSLDDLYLSPSVPDARLWPLSSSRLFSIKSFFLALSQS 491

[Close]

BLAST of Lcy11g018730 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) )

HSP 1 Score: 72.8 bits (177), Expect = 5.8e-13
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 13 LLNGRPRGKMFASRGLRQGDPLSPFLFILVVDVLSRIVSSGVDRGVIEGFKVGSKGIPLS 72
          ++NG P+G +  SRGLRQGDPLSP+LFIL  +VLS +     ++G + G +V +    ++
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72

Query: 73 HLQFADDT 81
          HL FADDT
Sbjct: 73 HLLFADDT 80

The following BLAST results are available for this feature:

BLAST of Lcy11g018730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92555	8.2e-12	48.53	Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 ...	[more]
O00370	7.6e-10	38.18	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1	[more]
P11369	1.9e-08	34.58	LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE...	[more]
P08548	2.1e-07	35.51	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1	[more]
P16423	3.3e-05	36.84	Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS...	[more]

BLAST of Lcy11g018730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DFI2	5.2e-78	41.72	uncharacterized protein LOC111019624 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A438BXW9	2.0e-53	38.86	LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF...	[more]
A0A438DSJ8	2.0e-53	39.65	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A5B7Z9	5.4e-51	36.65	Reverse transcriptase domain-containing protein (Fragment) OS=Vitis vinifera OX=...	[more]
A5BAF8	1.2e-50	36.02	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]

BLAST of Lcy11g018730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151711.1	1.1e-77	41.72	uncharacterized protein LOC111019624 [Momordica charantia]	[more]
RVW15777.1	4.1e-53	38.86	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]
RVW38475.1	4.1e-53	39.65	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
CAN59965.1	1.1e-50	36.65	hypothetical protein VITISV_022758, partial [Vitis vinifera]	[more]
CAN69913.1	2.5e-50	36.02	hypothetical protein VITISV_042568 [Vitis vinifera]	[more]

BLAST of Lcy11g018730 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG01250.1	5.8e-13	48.53	RNA-directed DNA polymerase (reverse transcriptase)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 2..118 e-value: 6.8E-16 score: 58.5
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..130 score: 10.536036
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 10..126
None	No IPR available	PANTHER	PTHR33116:SF38	OS01G0158850 PROTEIN	coord: 10..126
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 25..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g018730.1	Lcy11g018730.1	mRNA