Lcy11g018640 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g018640
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	translation initiation factor IF-1, chloroplastic-like
Location	Chr11: 45449513 .. 45450022 (-)
RNA-Seq Expression	Lcy11g018640
Synteny	Lcy11g018640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGGAGGTGGGAATGCAAACAGGTAAGTTTTAATTTTTTATTTTTTTTTTTAGTTTTTACCAATTGGGTATTAATTTCAACCTAGAACCGTCTCCAATTCCCTCTCCTTCAATTCCACGCCCAGCCACCGTCCATTCTCCTTTTTCCGGCCATCAAATCGCATCTCTCCGTCGTCTCAATCCTTTCTCCGAGCTCTCAATTCCTCCATAACCCTTCCAGTGGTCCGGCAAGGTTCGCTCACATTGGCCAAGTCTCCAAAAAGCGATAGCTCGGAGCATAAATGGAGCCATGAAGGTTCAGTCGTGGAGTCTCTTCCCAATGGGATGTTCAGAGTTCTATTGGATAATAAAGACCTCATTCTTGGCTACATATCGGGTAAGATTAAGAAGAATTTTGTGTGTATTTTGCATGGTGATAGGGTCAGGGTTGAAGTTAGCCATTATGATTCTACCAAAGGTCGTATTGTTTATAGACTTCGAAACAGTACTAAGGATTCATCTTCATGA

mRNA sequence

ATGCATGGAGGTGGGAATGCAAACAGAACCGTCTCCAATTCCCTCTCCTTCAATTCCACGCCCAGCCACCGTCCATTCTCCTTTTTCCGGCCATCAAATCGCATCTCTCCGTCGTCTCAATCCTTTCTCCGAGCTCTCAATTCCTCCATAACCCTTCCAGTGGTCCGGCAAGGTTCGCTCACATTGGCCAAGTCTCCAAAAAGCGATAGCTCGGAGCATAAATGGAGCCATGAAGGTTCAGTCGTGGAGTCTCTTCCCAATGGGATGTTCAGAGTTCTATTGGATAATAAAGACCTCATTCTTGGCTACATATCGGGTAAGATTAAGAAGAATTTTGTGTGTATTTTGCATGGTGATAGGGTCAGGGTTGAAGTTAGCCATTATGATTCTACCAAAGGTCGTATTGTTTATAGACTTCGAAACAGTACTAAGGATTCATCTTCATGA

Coding sequence (CDS)

ATGCATGGAGGTGGGAATGCAAACAGAACCGTCTCCAATTCCCTCTCCTTCAATTCCACGCCCAGCCACCGTCCATTCTCCTTTTTCCGGCCATCAAATCGCATCTCTCCGTCGTCTCAATCCTTTCTCCGAGCTCTCAATTCCTCCATAACCCTTCCAGTGGTCCGGCAAGGTTCGCTCACATTGGCCAAGTCTCCAAAAAGCGATAGCTCGGAGCATAAATGGAGCCATGAAGGTTCAGTCGTGGAGTCTCTTCCCAATGGGATGTTCAGAGTTCTATTGGATAATAAAGACCTCATTCTTGGCTACATATCGGGTAAGATTAAGAAGAATTTTGTGTGTATTTTGCATGGTGATAGGGTCAGGGTTGAAGTTAGCCATTATGATTCTACCAAAGGTCGTATTGTTTATAGACTTCGAAACAGTACTAAGGATTCATCTTCATGA

Protein sequence

MHGGGNANRTVSNSLSFNSTPSHRPFSFFRPSNRISPSSQSFLRALNSSITLPVVRQGSLTLAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDSSS

Homology

[Close]

BLAST of Lcy11g018640 vs. ExPASy Swiss-Prot
Match: Q94KR7 (Translation initiation factor IF-1, chloroplastic OS=Glycine max OX=3847 GN=infA PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.3e-27
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 59  SLTLAKSPKSD-SSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILH 118
           +L+ A + K D S E KW HEG ++ESLPNGMFRV LDN+DLILGYISGKI+KN+V IL 
Sbjct: 51  ALSAASAAKPDKSGEQKWVHEGLIMESLPNGMFRVRLDNEDLILGYISGKIRKNYVRILP 110

Query: 119 GDRVRVEVSHYDSTKGRIVYRLRNST 144
           GDRV+VEV+ YDS+KGRIVYRLR+ST
Sbjct: 111 GDRVKVEVTRYDSSKGRIVYRLRSST 136

[Close]

BLAST of Lcy11g018640 vs. ExPASy Swiss-Prot
Match: Q94KR9 (Translation initiation factor IF-1, chloroplastic OS=Solanum lycopersicum OX=4081 GN=infA PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.0e-25
Identity = 52/71 (73.24%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 70  SSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYD 129
           S E KW+HEGS+ ESLPNGMFRV LDN D++LGYISGKI+KNF+ +L GDRV++EVS YD
Sbjct: 81  SQEQKWTHEGSITESLPNGMFRVKLDNADVVLGYISGKIRKNFIRLLPGDRVKIEVSRYD 140

Query: 130 STKGRIVYRLR 141
           S+KGRI+YRLR
Sbjct: 141 SSKGRIIYRLR 151

[Close]

BLAST of Lcy11g018640 vs. ExPASy Swiss-Prot
Match: A0A370 (Translation initiation factor IF-1, chloroplastic OS=Coffea arabica OX=13443 GN=infA PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-25
Identity = 54/75 (72.00%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 72  EHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDST 131
           E KW+HEG + ESLPNGMFRV LDN+DLILGY+SGKI+++F+ IL GDRV++EVS YDST
Sbjct: 3   EQKWTHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRRSFIRILPGDRVKIEVSRYDST 62

Query: 132 KGRIVYRLRNSTKDS 147
           +GRI+YRLRN  KDS
Sbjct: 63  RGRIIYRLRN--KDS 75

[Close]

BLAST of Lcy11g018640 vs. ExPASy Swiss-Prot
Match: Q7ICQ5 (Translation initiation factor IF-1, chloroplastic OS=Fouquieria splendens OX=13533 GN=infA PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.8e-25
Identity = 54/75 (72.00%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 72  EHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDST 131
           E KW HEG + ESLPNGMFRV LDN+DLILGY+SGKI+++F+ IL GDRV++EVS YDST
Sbjct: 3   EQKWIHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRRSFIRILPGDRVKIEVSRYDST 62

Query: 132 KGRIVYRLRNSTKDS 147
           +GRI+YRLRN  KDS
Sbjct: 63  RGRIIYRLRN--KDS 75

[Close]

BLAST of Lcy11g018640 vs. ExPASy Swiss-Prot
Match: Q94PL3 (Translation initiation factor IF-1, chloroplastic OS=Montinia caryophyllacea OX=23084 GN=infA PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.8e-25
Identity = 54/75 (72.00%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 72  EHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDST 131
           E KW HEG + ESLPNGMFRV LDN+DLILGY+SGKI+++F+ IL GDRV++EVS YDST
Sbjct: 3   EQKWIHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRRSFIRILPGDRVKIEVSRYDST 62

Query: 132 KGRIVYRLRNSTKDS 147
           +GRI+YRLRN  KDS
Sbjct: 63  RGRIIYRLRN--KDS 75

[Close]

BLAST of Lcy11g018640 vs. ExPASy TrEMBL
Match: A0A6J1CD60 (uncharacterized protein LOC111010461 OS=Momordica charantia OX=3673 GN=LOC111010461 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 8.0e-34
Identity = 84/119 (70.59%), Postives = 93/119 (78.15%), Query Frame = 0


Query: 31  PSNRISPSSQSFLRALNSSITLPVVRQGSL-TLAKSPKSDSSEHKWSHEGSVVESLPNGM 90
           PS R  PS  S     ++ + +P      L  +AKSPKSDSSE KWSHEGSV ESLPNGM
Sbjct: 32  PSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGM 91

Query: 91  FRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDSSS 149
           FRV LDN+DLILGYISGKI+KNFV IL GDRVR+EVS YDSTKGRIVYRLR+STKDSSS
Sbjct: 92  FRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS 150

[Close]

BLAST of Lcy11g018640 vs. ExPASy TrEMBL
Match: A0A5A7V7J3 (Translation initiation factor IF-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003940 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.2e-31
Identity = 89/146 (60.96%), Postives = 101/146 (69.18%), Query Frame = 0


Query: 12  SNSLSFNSTPSHRPFSFFRPSNRISPSSQSFLRALNSSITLPVVR---------QGSLTL 71
           +N L F    SH    F  PS  + P  +S L  +  SI+ P  +          G   +
Sbjct: 4   TNLLQFPLLQSH----FRPPSTLLFPPVKSHLSVV--SISFPTSQFLHTPSHAPPGFALM 63

Query: 72  AKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVR 131
           AKSPK+D+SE K SHEGSVVESLPNGMFRV LDN+DLILGYISGKI+KNFV IL GDRVR
Sbjct: 64  AKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVR 123

Query: 132 VEVSHYDSTKGRIVYRLRNSTKDSSS 149
           VEVS YDSTKGRIVYRLR+S KDSSS
Sbjct: 124 VEVSRYDSTKGRIVYRLRSSGKDSSS 143

[Close]

BLAST of Lcy11g018640 vs. ExPASy TrEMBL
Match: A0A0A0L4Q7 (S1-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637710 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 4.1e-30
Identity = 88/146 (60.27%), Postives = 101/146 (69.18%), Query Frame = 0


Query: 12  SNSLSFNSTPSHRPFSFFRPSNRISPSSQSFLRALNSSITLPV---------VRQGSLTL 71
           +N L F    SH    F  PS  + P+ +S L    +SI+ P               + +
Sbjct: 4   TNLLQFPLLQSH----FRPPSTLLFPAVKSHLSL--ASISFPTSQFLHTPSHASPAFVLM 63

Query: 72  AKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVR 131
           AKSPK+D+SE K SHEGSVVESLPNGMFRV LDN+DLILGYISGKI+KNFV IL GDRVR
Sbjct: 64  AKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPGDRVR 123

Query: 132 VEVSHYDSTKGRIVYRLRNSTKDSSS 149
           VEVS YDSTKGRIVYR+R STKDSSS
Sbjct: 124 VEVSRYDSTKGRIVYRMR-STKDSSS 142

[Close]

BLAST of Lcy11g018640 vs. ExPASy TrEMBL
Match: A0A6J1IW62 (translation initiation factor IF-1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480474 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 9.1e-30
Identity = 73/87 (83.91%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 62  LAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRV 121
           +AKSPKS+SSE K+SHEGSV+ESLPNGMFRV LDN+DLILGYISGKI+KNFV IL GDRV
Sbjct: 57  MAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRV 116

Query: 122 RVEVSHYDSTKGRIVYRLRNSTKDSSS 149
           RVEVS YDSTKGRIVYR R STKD SS
Sbjct: 117 RVEVSRYDSTKGRIVYRHR-STKDPSS 142

[Close]

BLAST of Lcy11g018640 vs. ExPASy TrEMBL
Match: A0A6J1FLU6 (translation initiation factor IF-1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446393 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 9.1e-30
Identity = 73/87 (83.91%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 62  LAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRV 121
           +AKSPKS+SSE K+SHEGSV+ESLPNGMFRV LDN+DLILGYISGKI+KNFV IL GDRV
Sbjct: 57  MAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRV 116

Query: 122 RVEVSHYDSTKGRIVYRLRNSTKDSSS 149
           RVEVS YDSTKGRIVYR R STKD SS
Sbjct: 117 RVEVSRYDSTKGRIVYRHR-STKDPSS 142

[Close]

BLAST of Lcy11g018640 vs. NCBI nr
Match: XP_038899010.1 (translation initiation factor IF-1, chloroplastic [Benincasa hispida])

HSP 1 Score: 154.8 bits (390), Expect = 5.6e-34
Identity = 91/143 (63.64%), Postives = 102/143 (71.33%), Query Frame = 0


Query: 15  LSFNSTPSHRPFSFFRPSNRISPSSQSFLRALNSSITLPVVR---------QGSLTLAKS 74
           L F    SH    F  PS    P+ +S L  +  SIT P  +          G + +AKS
Sbjct: 7   LQFPLLQSH----FRPPSTLFFPAVKSHLSVV--SITFPTTQFLHNPSHASAGFVLMAKS 66

Query: 75  PKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEV 134
           PK+D+SE KWSHEGSVVESLPNGMFRV LDN+DLILGYISGKI+KNFV IL GDRVRVEV
Sbjct: 67  PKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 126

Query: 135 SHYDSTKGRIVYRLRNSTKDSSS 149
           S YDSTKGRIVYRLR+STKDSSS
Sbjct: 127 SRYDSTKGRIVYRLRSSTKDSSS 143

[Close]

BLAST of Lcy11g018640 vs. NCBI nr
Match: XP_022139601.1 (uncharacterized protein LOC111010461 [Momordica charantia])

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-33
Identity = 84/119 (70.59%), Postives = 93/119 (78.15%), Query Frame = 0


Query: 31  PSNRISPSSQSFLRALNSSITLPVVRQGSL-TLAKSPKSDSSEHKWSHEGSVVESLPNGM 90
           PS R  PS  S     ++ + +P      L  +AKSPKSDSSE KWSHEGSV ESLPNGM
Sbjct: 32  PSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGM 91

Query: 91  FRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDSSS 149
           FRV LDN+DLILGYISGKI+KNFV IL GDRVR+EVS YDSTKGRIVYRLR+STKDSSS
Sbjct: 92  FRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS 150

[Close]

BLAST of Lcy11g018640 vs. NCBI nr
Match: KAA0064332.1 (translation initiation factor IF-1 [Cucumis melo var. makuwa] >TYK20254.1 translation initiation factor IF-1 [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 4.5e-31
Identity = 89/146 (60.96%), Postives = 101/146 (69.18%), Query Frame = 0


Query: 12  SNSLSFNSTPSHRPFSFFRPSNRISPSSQSFLRALNSSITLPVVR---------QGSLTL 71
           +N L F    SH    F  PS  + P  +S L  +  SI+ P  +          G   +
Sbjct: 4   TNLLQFPLLQSH----FRPPSTLLFPPVKSHLSVV--SISFPTSQFLHTPSHAPPGFALM 63

Query: 72  AKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVR 131
           AKSPK+D+SE K SHEGSVVESLPNGMFRV LDN+DLILGYISGKI+KNFV IL GDRVR
Sbjct: 64  AKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVR 123

Query: 132 VEVSHYDSTKGRIVYRLRNSTKDSSS 149
           VEVS YDSTKGRIVYRLR+S KDSSS
Sbjct: 124 VEVSRYDSTKGRIVYRLRSSGKDSSS 143

[Close]

BLAST of Lcy11g018640 vs. NCBI nr
Match: XP_011654076.1 (uncharacterized protein LOC101206284 [Cucumis sativus] >KGN55131.1 hypothetical protein Csa_012104 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 8.4e-30
Identity = 88/146 (60.27%), Postives = 101/146 (69.18%), Query Frame = 0


Query: 12  SNSLSFNSTPSHRPFSFFRPSNRISPSSQSFLRALNSSITLPV---------VRQGSLTL 71
           +N L F    SH    F  PS  + P+ +S L    +SI+ P               + +
Sbjct: 4   TNLLQFPLLQSH----FRPPSTLLFPAVKSHLSL--ASISFPTSQFLHTPSHASPAFVLM 63

Query: 72  AKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVR 131
           AKSPK+D+SE K SHEGSVVESLPNGMFRV LDN+DLILGYISGKI+KNFV IL GDRVR
Sbjct: 64  AKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPGDRVR 123

Query: 132 VEVSHYDSTKGRIVYRLRNSTKDSSS 149
           VEVS YDSTKGRIVYR+R STKDSSS
Sbjct: 124 VEVSRYDSTKGRIVYRMR-STKDSSS 142

[Close]

BLAST of Lcy11g018640 vs. NCBI nr
Match: XP_022940969.1 (translation initiation factor IF-1, chloroplastic-like [Cucurbita moschata] >XP_023525132.1 translation initiation factor IF-1, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG7037405.1 Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-29
Identity = 73/87 (83.91%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 62  LAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRV 121
           +AKSPKS+SSE K+SHEGSV+ESLPNGMFRV LDN+DLILGYISGKI+KNFV IL GDRV
Sbjct: 57  MAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRV 116

Query: 122 RVEVSHYDSTKGRIVYRLRNSTKDSSS 149
           RVEVS YDSTKGRIVYR R STKD SS
Sbjct: 117 RVEVSRYDSTKGRIVYRHR-STKDPSS 142

[Close]

BLAST of Lcy11g018640 vs. TAIR 10
Match: AT4G11175.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-19
Identity = 46/74 (62.16%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 66  PKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEV 125
           P+     +K   EG V ESLPNGMFRV L+N D ILGYI GKI+KNF+ IL GD+V+VE+
Sbjct: 64  PQVKEGSNKTVIEGLVTESLPNGMFRVDLENGDNILGYICGKIRKNFIRILPGDKVKVEM 123

Query: 126 SHYDSTKGRIVYRL 140
           S YDSTKGRI++R+
Sbjct: 124 SVYDSTKGRIIFRM 137

The following BLAST results are available for this feature:

BLAST of Lcy11g018640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94KR7	5.3e-27	70.93	Translation initiation factor IF-1, chloroplastic OS=Glycine max OX=3847 GN=infA...	[more]
Q94KR9	1.0e-25	73.24	Translation initiation factor IF-1, chloroplastic OS=Solanum lycopersicum OX=408...	[more]
A0A370	1.7e-25	72.00	Translation initiation factor IF-1, chloroplastic OS=Coffea arabica OX=13443 GN=...	[more]
Q7ICQ5	3.8e-25	72.00	Translation initiation factor IF-1, chloroplastic OS=Fouquieria splendens OX=135...	[more]
Q94PL3	3.8e-25	72.00	Translation initiation factor IF-1, chloroplastic OS=Montinia caryophyllacea OX=...	[more]

BLAST of Lcy11g018640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CD60	8.0e-34	70.59	uncharacterized protein LOC111010461 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A5A7V7J3	2.2e-31	60.96	Translation initiation factor IF-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0L4Q7	4.1e-30	60.27	S1-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637710 PE=...	[more]
A0A6J1IW62	9.1e-30	83.91	translation initiation factor IF-1, chloroplastic-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1FLU6	9.1e-30	83.91	translation initiation factor IF-1, chloroplastic-like OS=Cucurbita moschata OX=...	[more]

BLAST of Lcy11g018640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899010.1	5.6e-34	63.64	translation initiation factor IF-1, chloroplastic [Benincasa hispida]	[more]
XP_022139601.1	1.6e-33	70.59	uncharacterized protein LOC111010461 [Momordica charantia]	[more]
KAA0064332.1	4.5e-31	60.96	translation initiation factor IF-1 [Cucumis melo var. makuwa] >TYK20254.1 transl...	[more]
XP_011654076.1	8.4e-30	60.27	uncharacterized protein LOC101206284 [Cucumis sativus] >KGN55131.1 hypothetical ...	[more]
XP_022940969.1	1.9e-29	83.91	translation initiation factor IF-1, chloroplastic-like [Cucurbita moschata] >XP_...	[more]

BLAST of Lcy11g018640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11175.1	1.4e-19	62.16	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 66..147 e-value: 4.1E-29 score: 102.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR33370:SF1	TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC	coord: 16..144
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 78..138 e-value: 3.7E-19 score: 68.3
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 78..140 score: 17.870689
IPR004368	Translation initiation factor IF-1	TIGRFAM	TIGR00008	TIGR00008	coord: 72..139 e-value: 3.7E-31 score: 104.9
IPR004368	Translation initiation factor IF-1	PANTHER	PTHR33370	TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC	coord: 16..144
IPR004368	Translation initiation factor IF-1	HAMAP	MF_00075	IF_1	coord: 69..140 score: 20.856413
IPR004368	Translation initiation factor IF-1	CDD	cd04451	S1_IF1	coord: 78..138 e-value: 9.08054E-30 score: 101.058
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 72..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g018640.1	Lcy11g018640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005829	cytosol
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding