Lcy11g017860 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g017860
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Chr11: 43903574 .. 43904678 (+)
RNA-Seq Expression	Lcy11g017860
Synteny	Lcy11g017860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCCCCCCAAAATTGTGGAGGTTTGGGAGTAGGTGATATGAGGAAAAGAAATTTGGCTTTACGAACCAAATGGCTGTGGAAATATGCCCAAAGAAAATGCTCATTGGAAGAAAGTCATAAAAAGCAAATTCGGGCATTTGGATAGCAGATGGATCCCAAACAGCAAAAAGAAAATTTTGAAACTCAATCCTTGGCAGAACATTTGTAAAAACAGAGACTTCTCCGAAAGCAACATCAAGTTGGGTAATGACAGAAAAATCTGTTTCTGGGAAGTGGGAAGACACTTGGGCTACCTCAAGACCTTTATACAAAGAATTTCCTTCCATCCACGCCATAGCAATTTCTAAGGCTTATTCGGTTCAAGATTGTTGGTCTCCCTTGGGAGAAGTGTGGAATCTTAATCTCAGATGGGGGCTTCTTGATAGATTAATGGATAAATGGGACAATTTTATAAACATTCTAGAAAGATTAAGACCAAATGGAGAGAAGGACCAGATGATTTGGACTCCAGACTCCTCATGGTCATTTACTAGCAGTCAGCAACTATTTTAATACAGGGGAACAATCCCTTCCTTAATCATTCGATTTCCAAGGAAATTTGGGAAGGAAGTAGCCCCAAGAAAGTTAAGTTTTCATCTAGTCGTTAGCTCACAGAAGCCTAAACACTATGGATAGAGTTCAAAGAAGACATCCGACAATTGCTCTCTACCCCAACATGTGTCTCCTTTGTAGTAAAAGTTCAGAAACTAGCAGCCACCTTCTCCTCCACAGTCAATTTGCGGACAAGGGATGGATTTTCAACTGCAATCTTTTTCAGCTGACTTGGTTTTTCCATAAAAATGTGGAAGAAATAATCTTGCAGGAGTTGCTGCTTGGTTGATGGTTCAAAAAGAGAGCAACGATGTTGTGGAATAGCAGATGGTTCTCAAATAAGACTTCTTTTCATTTTTTCCGTGAAAATATACCATTTACGGTCTCCCCTTGGAGTGCCTAACATAATTCTTTTTATAACACTTTTTTTATAAGAAACCAAACTTTCATTAAGAAGAACGAAAAAGAGAACAAGGACATATAAAAAACAAACCCCGAGAAACTAGATACAAG

mRNA sequence

CAGCCCCCCAAAATTGTGGAGGTTTGGGAGTAGGTGATATGAGGAAAAGAAATTTGGCTTTACGAACCAAATGGCTGTGGAAATATGCCCAAAGAAAATGCTCATTGGAAGAAAGTCATAAAAAGCAAATTCGGGCATTTGGATAGCAGATGGATCCCAAACAGCAAAAAGAAAATTTTGAAACTCAATCCTTGGCAGAACATTTGTAAAAACAGAGACTTCTCCGAAAGCAACATCAAGTTGGGTAATGACAGAAAAATCTGTTTCTGGGAAGTGGGAAGACACTTGGGCTACCTCAAGACCTTTATACAAAGAATTTCCTTCCATCCACGCCATAGCAATTTCTAAGGCTTATTCGGTTCAAGATTGTTGGTCTCCCTTGGGAGAAGTGTGGAATCTTAATCTCAGATGGGGGCTTCTTGATAGATTAATGGATAAATGGGACAATTTTATAAACATTCTAGAAAGATTAAGACCAAATGGAGAGAAGGACCAGATGATTTGGACTCCAGACTCCTCATGGTCATTTACTAGCAGTCAGCAACTATTTTAATACAGGGGAACAATCCCTTCCTTAATCATTCGATTTCCAAGGAAATTTGGGAAGGAAGTAGCCCCAAGAAAGTTAAGTTTTCATCTAGTCGTTAGCTCACAGAAGCCTAAACACTATGGATAGAGTTCAAAGAAGACATCCGACAATTGCTCTCTACCCCAACATGTGTCTCCTTTGTAGTAAAAGTTCAGAAACTAGCAGCCACCTTCTCCTCCACAGTCAATTTGCGGACAAGGGATGGATTTTCAACTGCAATCTTTTTCAGCTGACTTGGTTTTTCCATAAAAATGTGGAAGAAATAATCTTGCAGGAGTTGCTGCTTGGTTGATGGTTCAAAAAGAGAGCAACGATGTTGTGGAATAGCAGATGGTTCTCAAATAAGACTTCTTTTCATTTTTTCCGTGAAAATATACCATTTACGGTCTCCCCTTGGAGTGCCTAACATAATTCTTTTTATAACACTTTTTTTATAAGAAACCAAACTTTCATTAAGAAGAACGAAAAAGAGAACAAGGACATATAAAAAACAAACCCCGAGAAACTAGATACAAG

Coding sequence (CDS)

ATGACAGAAAAATCTGTTTCTGGGAAGTGGGAAGACACTTGGGCTACCTCAAGACCTTTATACAAAGAATTTCCTTCCATCCACGCCATAGCAATTTCTAAGGCTTATTCGGTTCAAGATTGTTGGTCTCCCTTGGGAGAAGTGTGGAATCTTAATCTCAGATGGGGGCTTCTTGATAGATTAATGGATAAATGGGACAATTTTATAAACATTCTAGAAAGATTAAGACCAAATGGAGAGAAGGACCAGATGATTTGGACTCCAGACTCCTCATGGTCATTTACTAGCAGTCAGCAACTATTTTAA

Protein sequence

MTEKSVSGKWEDTWATSRPLYKEFPSIHAIAISKAYSVQDCWSPLGEVWNLNLRWGLLDRLMDKWDNFINILERLRPNGEKDQMIWTPDSSWSFTSSQQLF

Homology

[Close]

BLAST of Lcy11g017860 vs. ExPASy TrEMBL
Match: A0A5A7V9M3 (THO complex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002040 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.7e-09
Identity = 31/93 (33.33%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 2   TEKSVSGKWEDTWATSRPLYKEFPSIHAIAISKAYSVQDCWSPLGEVWNLNLRWGLLDRL 61
           T +S++G   D W    PL  +FP++ +++++K   V DCW  +  +WNL LR  +LD  
Sbjct: 9   TRESLTGYESDNWCGVEPLAVKFPNLFSVSLNKDAFVADCWCIVAHLWNLGLRRNVLDNK 68

Query: 62  MDKWDNFINILERLRPNGEKDQMIWTPDSSWSF 95
           +D     + IL    P+   D + WTP+ + SF
Sbjct: 69  LDNVAAVLEILHSWAPSNGGDSLKWTPNDNGSF 101

[Close]

BLAST of Lcy11g017860 vs. ExPASy TrEMBL
Match: A0A5A7VF37 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00270 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.9e-09
Identity = 29/86 (33.72%), Postives = 46/86 (53.49%), Query Frame = 0


Query: 10  WEDTWATSRPLYKEFPSIHAIAISKAYSVQDCWSPLGEVWNLNLRWGLLDRLMDKWDNFI 69
           W+D W    PL + FP++ +++++    V DCW  +   WNL LR  +LD  +D   + +
Sbjct: 56  WKDNWCGVEPLAENFPNLFSLSLNNDAFVADCWCIITHSWNLRLRRNVLDNKLDNVASIL 115

Query: 70  NILERLRPNGEKDQMIWTPDSSWSFT 96
            IL    P+   D   WTP+ + SFT
Sbjct: 116 EILHSWAPSDSGDSRKWTPNVNGSFT 141

[Close]

BLAST of Lcy11g017860 vs. ExPASy TrEMBL
Match: A0A5A7T5L3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00210 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.1e-08
Identity = 28/88 (31.82%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 10  WEDTWATSRPLYKEFPSIHAIAISKAYSVQDCWSPLGEVWNLNLRWGLLDRLMDKWDNFI 69
           W   W  S  L   +P ++ ++ ++  ++++ W P    WNL+ R  L DR ++ W N  
Sbjct: 581 WHSNWIASGSLSNTYPRLYTLSKAQNATIEELWDPNTNDWNLHPRRPLNDREIELWTNLK 640

Query: 70  NILERLRPNGEKDQMIWTPDSSWSFTSS 98
            IL+ L  NG K+ MIWTP+   ++T++
Sbjct: 641 GILKILTLNGGKNNMIWTPNDKGTYTAA 668

[Close]

BLAST of Lcy11g017860 vs. ExPASy TrEMBL
Match: A0A5D3BPP1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1582G00200 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.1e-08
Identity = 28/88 (31.82%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 10  WEDTWATSRPLYKEFPSIHAIAISKAYSVQDCWSPLGEVWNLNLRWGLLDRLMDKWDNFI 69
           W   W  S  L   +P ++ ++ ++  ++++ W P    WNL+ R  L DR ++ W N  
Sbjct: 556 WHSNWIASGSLSNTYPRLYTLSKAQNATIEELWDPNTNDWNLHPRRPLNDREIELWTNLK 615

Query: 70  NILERLRPNGEKDQMIWTPDSSWSFTSS 98
            IL+ L  NG K+ MIWTP+   ++T++
Sbjct: 616 GILKILTLNGGKNNMIWTPNDKGTYTAA 643

[Close]

BLAST of Lcy11g017860 vs. ExPASy TrEMBL
Match: A0A6J1D884 (uncharacterized protein LOC111017819 OS=Momordica charantia OX=3673 GN=LOC111017819 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.9e-07
Identity = 27/77 (35.06%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 10  WEDTWATSRPLYKEFPSIHAIAISKAYSVQDCWSPLGEVWNLNLRWGLLDRLMDKWDNFI 69
           W D W     L ++FP ++AI++ K   V DCWS + + W+L  R GL DR ++ W   +
Sbjct: 45  WLDKWNGEATLAEDFPDLYAISLKKEAVVADCWSNVYKTWDLGFRRGLFDRELECWTRMV 104

Query: 70  NILERLRPNGEKDQMIW 87
             LE      E D ++W
Sbjct: 105 ERLEVFVLEEESDAVVW 121

[Close]

BLAST of Lcy11g017860 vs. NCBI nr
Match: KAA0062399.1 (THO complex subunit 1 [Cucumis melo var. makuwa] >TYK26582.1 THO complex subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 5.6e-09
Identity = 31/93 (33.33%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 2   TEKSVSGKWEDTWATSRPLYKEFPSIHAIAISKAYSVQDCWSPLGEVWNLNLRWGLLDRL 61
           T +S++G   D W    PL  +FP++ +++++K   V DCW  +  +WNL LR  +LD  
Sbjct: 9   TRESLTGYESDNWCGVEPLAVKFPNLFSVSLNKDAFVADCWCIVAHLWNLGLRRNVLDNK 68

Query: 62  MDKWDNFINILERLRPNGEKDQMIWTPDSSWSF 95
           +D     + IL    P+   D + WTP+ + SF
Sbjct: 69  LDNVAAVLEILHSWAPSNGGDSLKWTPNDNGSF 101

[Close]

BLAST of Lcy11g017860 vs. NCBI nr
Match: KAA0065914.1 (uncharacterized protein E6C27_scaffold538G00970 [Cucumis melo var. makuwa] >TYK15101.1 uncharacterized protein E5676_scaffold259G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-08
Identity = 29/86 (33.72%), Postives = 46/86 (53.49%), Query Frame = 0


Query: 10  WEDTWATSRPLYKEFPSIHAIAISKAYSVQDCWSPLGEVWNLNLRWGLLDRLMDKWDNFI 69
           W+D W    PL + FP++ +++++    V DCW  +   WNL LR  +LD  +D   + +
Sbjct: 56  WKDNWCGVEPLAENFPNLFSLSLNNDAFVADCWCIITHSWNLRLRRNVLDNKLDNVASIL 115

Query: 70  NILERLRPNGEKDQMIWTPDSSWSFT 96
            IL    P+   D   WTP+ + SFT
Sbjct: 116 EILHSWAPSDSGDSRKWTPNVNGSFT 141

[Close]

BLAST of Lcy11g017860 vs. NCBI nr
Match: KAA0037436.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 28/88 (31.82%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 10  WEDTWATSRPLYKEFPSIHAIAISKAYSVQDCWSPLGEVWNLNLRWGLLDRLMDKWDNFI 69
           W   W  S  L   +P ++ ++ ++  ++++ W P    WNL+ R  L DR ++ W N  
Sbjct: 581 WHSNWIASGSLSNTYPRLYTLSKAQNATIEELWDPNTNDWNLHPRRPLNDREIELWTNLK 640

Query: 70  NILERLRPNGEKDQMIWTPDSSWSFTSS 98
            IL+ L  NG K+ MIWTP+   ++T++
Sbjct: 641 GILKILTLNGGKNNMIWTPNDKGTYTAA 668

[Close]

BLAST of Lcy11g017860 vs. NCBI nr
Match: TYK00226.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 28/88 (31.82%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 10  WEDTWATSRPLYKEFPSIHAIAISKAYSVQDCWSPLGEVWNLNLRWGLLDRLMDKWDNFI 69
           W   W  S  L   +P ++ ++ ++  ++++ W P    WNL+ R  L DR ++ W N  
Sbjct: 556 WHSNWIASGSLSNTYPRLYTLSKAQNATIEELWDPNTNDWNLHPRRPLNDREIELWTNLK 615

Query: 70  NILERLRPNGEKDQMIWTPDSSWSFTSS 98
            IL+ L  NG K+ MIWTP+   ++T++
Sbjct: 616 GILKILTLNGGKNNMIWTPNDKGTYTAA 643

[Close]

BLAST of Lcy11g017860 vs. NCBI nr
Match: XP_022149391.1 (uncharacterized protein LOC111017819 [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 4.0e-07
Identity = 27/77 (35.06%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 10  WEDTWATSRPLYKEFPSIHAIAISKAYSVQDCWSPLGEVWNLNLRWGLLDRLMDKWDNFI 69
           W D W     L ++FP ++AI++ K   V DCWS + + W+L  R GL DR ++ W   +
Sbjct: 45  WLDKWNGEATLAEDFPDLYAISLKKEAVVADCWSNVYKTWDLGFRRGLFDRELECWTRMV 104

Query: 70  NILERLRPNGEKDQMIW 87
             LE      E D ++W
Sbjct: 105 ERLEVFVLEEESDAVVW 121

The following BLAST results are available for this feature:

BLAST of Lcy11g017860 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g017860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V9M3	2.7e-09	33.33	THO complex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold31...	[more]
A0A5A7VF37	7.9e-09	33.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T5L3	5.1e-08	31.82	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BPP1	5.1e-08	31.82	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A6J1D884	1.9e-07	35.06	uncharacterized protein LOC111017819 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of Lcy11g017860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062399.1	5.6e-09	33.33	THO complex subunit 1 [Cucumis melo var. makuwa] >TYK26582.1 THO complex subunit...	[more]
KAA0065914.1	1.6e-08	33.72	uncharacterized protein E6C27_scaffold538G00970 [Cucumis melo var. makuwa] >TYK1...	[more]
KAA0037436.1	1.1e-07	31.82	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK00226.1	1.1e-07	31.82	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
XP_022149391.1	4.0e-07	35.06	uncharacterized protein LOC111017819 [Momordica charantia]	[more]

BLAST of Lcy11g017860 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g017860.1	Lcy11g017860.1	mRNA