Lcy11g017340 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g017340
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr11: 43116639 .. 43117226 (+)
RNA-Seq Expression	Lcy11g017340
Synteny	Lcy11g017340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCCAAGCGACGGGACTCTCCCGCTGAAGTGGCTGCCCCCGCCGACAGGTCTCTGGAAGCTGAACAGTGACGCGACGTGGTGCGATCGTACGAAAAGTGGTGGCATCGGCTGGATTCTTCGCCGGTGCGACGGAACTCCGATAAGTGCAGGCTTTAGATTTATTGTGAGGCAGTGGAAAGTGGCGTGGTTGGAAGCCCTAGCTGTAGTGGAAGGTCTGAAATCGATTCCCATCTCCTCTCCCAAGCTGATTATCGAGCTTGACTCAGTGCAGGTGGTACATCAGCTTGAAGGGCGGGAAGTCGATGAGCTATCCATCTTCATCGAGGAAGCTAACGCGTTGATGGCTAATCTTCAAATTCAGGCAGTGACTCACGTTTCCAGAAGGCGTAACTTTTTGGCCCATCATCTGGCCCAAAAAGCCCATATTGTTAAGTCAAATAGTAGTTGGAGTGGTAACTTTCGTTCATGGATTTTGAATTTAAATTCTGATGATATTGGGACTTCTATTGGCGGTGATGGGGTATCTGTCCCACATTTGCCGGTTCTTTGGGAGCTCCTGCTCTCTTTTAGCTGTTTTGTTTAG

mRNA sequence

ATGGTCCCAAGCGACGGGACTCTCCCGCTGAAGTGGCTGCCCCCGCCGACAGGTCTCTGGAAGCTGAACAGTGACGCGACGTGGTGCGATCGTACGAAAAGTGGTGGCATCGGCTGGATTCTTCGCCGGTGCGACGGAACTCCGATAAGTGCAGGCTTTAGATTTATTGTGAGGCAGTGGAAAGTGGCGTGGTTGGAAGCCCTAGCTGTAGTGGAAGGTCTGAAATCGATTCCCATCTCCTCTCCCAAGCTGATTATCGAGCTTGACTCAGTGCAGGTGGTACATCAGCTTGAAGGGCGGGAAGTCGATGAGCTATCCATCTTCATCGAGGAAGCTAACGCGTTGATGGCTAATCTTCAAATTCAGGCAGTGACTCACGTTTCCAGAAGGCGTAACTTTTTGGCCCATCATCTGGCCCAAAAAGCCCATATTGTTAAGTCAAATAGTAGTTGGAGTGGTAACTTTCGTTCATGGATTTTGAATTTAAATTCTGATGATATTGGGACTTCTATTGGCGGTGATGGGGTATCTGTCCCACATTTGCCGGTTCTTTGGGAGCTCCTGCTCTCTTTTAGCTGTTTTGTTTAG

Coding sequence (CDS)

ATGGTCCCAAGCGACGGGACTCTCCCGCTGAAGTGGCTGCCCCCGCCGACAGGTCTCTGGAAGCTGAACAGTGACGCGACGTGGTGCGATCGTACGAAAAGTGGTGGCATCGGCTGGATTCTTCGCCGGTGCGACGGAACTCCGATAAGTGCAGGCTTTAGATTTATTGTGAGGCAGTGGAAAGTGGCGTGGTTGGAAGCCCTAGCTGTAGTGGAAGGTCTGAAATCGATTCCCATCTCCTCTCCCAAGCTGATTATCGAGCTTGACTCAGTGCAGGTGGTACATCAGCTTGAAGGGCGGGAAGTCGATGAGCTATCCATCTTCATCGAGGAAGCTAACGCGTTGATGGCTAATCTTCAAATTCAGGCAGTGACTCACGTTTCCAGAAGGCGTAACTTTTTGGCCCATCATCTGGCCCAAAAAGCCCATATTGTTAAGTCAAATAGTAGTTGGAGTGGTAACTTTCGTTCATGGATTTTGAATTTAAATTCTGATGATATTGGGACTTCTATTGGCGGTGATGGGGTATCTGTCCCACATTTGCCGGTTCTTTGGGAGCTCCTGCTCTCTTTTAGCTGTTTTGTTTAG

Protein sequence

MVPSDGTLPLKWLPPPTGLWKLNSDATWCDRTKSGGIGWILRRCDGTPISAGFRFIVRQWKVAWLEALAVVEGLKSIPISSPKLIIELDSVQVVHQLEGREVDELSIFIEEANALMANLQIQAVTHVSRRRNFLAHHLAQKAHIVKSNSSWSGNFRSWILNLNSDDIGTSIGGDGVSVPHLPVLWELLLSFSCFV

Homology

[Close]

BLAST of Lcy11g017340 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.6e-18
Identity = 61/155 (39.35%), Postives = 86/155 (55.48%), Query Frame = 0


Query: 10  LKWLPPPTGLWKLNSDATWCDRTKSGGIGWILRRCDGTPISAGFRFIVRQWKVAWLEALA 69
           LKW PPP  +W LN+DA+W D T  GGIGWI+R  DG  + AG RF+     V  LEA A
Sbjct: 69  LKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASA 128

Query: 70  VVEGLKSIP---ISSPKLIIELDSVQVVHQLEGREVD--ELSIFIEEANALMANLQIQAV 129
           ++EGL+++    +  P L IE DS +V   L  +  D  +    +EE   L  + +I A 
Sbjct: 129 ILEGLRNLTNLGVLRP-LHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAF 188

Query: 130 THVSRRRNFLAHHLAQKAHIVKSNSSWSGNFRSWI 160
             V R  N  AH LAQ+A +++ +  W   F +W+
Sbjct: 189 AKVGRETNGCAHSLAQRASVLRESMIWVDCFPNWL 222

[Close]

BLAST of Lcy11g017340 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-15
Identity = 51/135 (37.78%), Postives = 81/135 (60.00%), Query Frame = 0


Query: 11  KWLPPPTGLWKLNSDATWCDRTKSGGIGWILRRCDGTPISAGFRFIVRQWKVAWLEALAV 70
           +W PP +  WKLN++A W   T +GGIGWILR   G  I A  R I  +  + +LE +A+
Sbjct: 78  QWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAI 137

Query: 71  VEGLKSIPISSPKLI-IELDSVQVVHQLEGREVDELSI--FIEEANALMANLQIQAVTHV 130
            EGL++I     + I +E DS++ +H L  +  D+  I   +EE   +M +++I ++ H+
Sbjct: 138 CEGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHI 197

Query: 131 SRRRNFLAHHLAQKA 143
           SR  N +AH LA++A
Sbjct: 198 SREANKVAHGLARRA 212

[Close]

BLAST of Lcy11g017340 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-15
Identity = 53/143 (37.06%), Postives = 82/143 (57.34%), Query Frame = 0


Query: 11  KWLPPPTGLWKLNSDATWCDRTKSGGIGWILRRCDGTPISAGFRFIVRQWKVAWLEALAV 70
           +W PP +  WKLN+DA W   T +GGIGWILR   G  I A  R I  +  + +LE +A+
Sbjct: 78  RWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAI 137

Query: 71  VEGLKSI------PISSP---KLIIELDSVQVVHQLEGREVDELSI--FIEEANALMANL 130
            EGL++I      PI       + +E DS++ +H L  +  D+  I   +EE   +M ++
Sbjct: 138 CEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDM 197

Query: 131 QIQAVTHVSRRRNFLAHHLAQKA 143
           +I ++ H+SR  N +AH LA++A
Sbjct: 198 KIVSMRHISREANKVAHDLARRA 220

[Close]

BLAST of Lcy11g017340 vs. ExPASy TrEMBL
Match: A0A6J5UAY2 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20161 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-10
Identity = 46/163 (28.22%), Postives = 79/163 (48.47%), Query Frame = 0


Query: 12   WLPPPTGLWKLNSDATWCDRTKSGGIGWILRRCDGTPISAGFRFIVRQWKVAWLEALAVV 71
            W  PP G+ K+N DA W  +T+ GG+GW++R  DG  + AG +  +R      +EA A+ 
Sbjct: 1147 WRKPPYGVLKVNCDAAWVSQTQMGGVGWVVRDSDGWMVQAGGKGDMRGGSALAMEAEAIR 1206

Query: 72   EGLKS-IPISSPKLIIELDSVQVVHQLEGREVDELSI--FIEEANALMANLQIQAVTHVS 131
            E L + +     KL +E DS+QV+  + G    ++++   + +   L+   Q     +  
Sbjct: 1207 EALVACVQSGLSKLEVESDSLQVIRMIGGEWNMDIAVDTIVFDIKQLVGQFQHCVFLYTP 1266

Query: 132  RRRNFLAHHLAQKAHIVKSNSSWSGNFRSWILNLNSDDIGTSI 172
            R  N  AH +A     V    +W   +  WI ++   D+  +I
Sbjct: 1267 RNCNKAAHKIAAFVSRVGGVHTWDDLWPEWIFDILVSDVNLTI 1309

[Close]

BLAST of Lcy11g017340 vs. ExPASy TrEMBL
Match: A0A4Y1R838 (Ribonuclease H-like superfamily protein OS=Prunus dulcis OX=3755 GN=Prudu_010255 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.8e-10
Identity = 56/174 (32.18%), Postives = 79/174 (45.40%), Query Frame = 0


Query: 3   PSD--GTLPLKWLPPPTGLWKLNSDATWCDRTKSGGIGWILRRCDGTPISAGFRFIVRQW 62
           PSD  G     W  PP GL KLN D  W  +T  GG+GW+LR   G  ISAG    +R  
Sbjct: 431 PSDSVGVASPGWSSPPPGLVKLNCDGAWVAQTGRGGVGWVLRDGIGCFISAGGCGDMRCT 490

Query: 63  KVAWLEALAVVEGLK-SIPISSPKLIIELDSVQVVHQLEGREVDELSI--FIEEANALMA 122
                EA AV E L   + +   K+ +E DS+ ++  L   +V +L I   + + + L  
Sbjct: 491 SALMAEAEAVREALTWCLELGFDKVAVESDSLSLIKMLNKEDVVDLEIEGILFDVHCLSH 550

Query: 123 NLQIQAVTHVSRRRNFLAHHLAQKAHIVKSNSSWSGNFRSWILNLNSDDIGTSI 172
                   +  R+ N  AH++A  A  +    SW      W+ N  + DI  SI
Sbjct: 551 RAHHVEFLYAPRKCNQAAHNVAAYAFRIGGRHSWDIVCPEWLFNCLAHDINCSI 604

[Close]

BLAST of Lcy11g017340 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 102.8 bits (255), Expect = 3.4e-18
Identity = 61/155 (39.35%), Postives = 86/155 (55.48%), Query Frame = 0


Query: 10  LKWLPPPTGLWKLNSDATWCDRTKSGGIGWILRRCDGTPISAGFRFIVRQWKVAWLEALA 69
           LKW PPP  +W LN+DA+W D T  GGIGWI+R  DG  + AG RF+     V  LEA A
Sbjct: 69  LKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASA 128

Query: 70  VVEGLKSIP---ISSPKLIIELDSVQVVHQLEGREVD--ELSIFIEEANALMANLQIQAV 129
           ++EGL+++    +  P L IE DS +V   L  +  D  +    +EE   L  + +I A 
Sbjct: 129 ILEGLRNLTNLGVLRP-LHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAF 188

Query: 130 THVSRRRNFLAHHLAQKAHIVKSNSSWSGNFRSWI 160
             V R  N  AH LAQ+A +++ +  W   F +W+
Sbjct: 189 AKVGRETNGCAHSLAQRASVLRESMIWVDCFPNWL 222

[Close]

BLAST of Lcy11g017340 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 3.5e-15
Identity = 53/143 (37.06%), Postives = 82/143 (57.34%), Query Frame = 0


Query: 11  KWLPPPTGLWKLNSDATWCDRTKSGGIGWILRRCDGTPISAGFRFIVRQWKVAWLEALAV 70
           +W PP +  WKLN+DA W   T +GGIGWILR   G  I A  R I  +  + +LE +A+
Sbjct: 78  RWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAI 137

Query: 71  VEGLKSI------PISSP---KLIIELDSVQVVHQLEGREVDELSI--FIEEANALMANL 130
            EGL++I      PI       + +E DS++ +H L  +  D+  I   +EE   +M ++
Sbjct: 138 CEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDM 197

Query: 131 QIQAVTHVSRRRNFLAHHLAQKA 143
           +I ++ H+SR  N +AH LA++A
Sbjct: 198 KIVSMRHISREANKVAHDLARRA 220

[Close]

BLAST of Lcy11g017340 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 3.5e-15
Identity = 51/135 (37.78%), Postives = 81/135 (60.00%), Query Frame = 0


Query: 11  KWLPPPTGLWKLNSDATWCDRTKSGGIGWILRRCDGTPISAGFRFIVRQWKVAWLEALAV 70
           +W PP +  WKLN++A W   T +GGIGWILR   G  I A  R I  +  + +LE +A+
Sbjct: 78  QWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAI 137

Query: 71  VEGLKSIPISSPKLI-IELDSVQVVHQLEGREVDELSI--FIEEANALMANLQIQAVTHV 130
            EGL++I     + I +E DS++ +H L  +  D+  I   +EE   +M +++I ++ H+
Sbjct: 138 CEGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHI 197

Query: 131 SRRRNFLAHHLAQKA 143
           SR  N +AH LA++A
Sbjct: 198 SREANKVAHGLARRA 212

[Close]

BLAST of Lcy11g017340 vs. NCBI nr
Match: XP_042983365.1 (uncharacterized protein LOC122312778 [Carya illinoinensis])

HSP 1 Score: 78.2 bits (191), Expect = 8.8e-11
Identity = 49/152 (32.24%), Postives = 78/152 (51.32%), Query Frame = 0


Query: 11  KWLPPPTGLWKLNSDATWCDRTKSGGIGWILRRCDGTPISAGFRFIVRQWKVAWLEALAV 70
           KW  P  G  K+N D       +  GIG +LR  +G  + A  +  +   + A +EA+A+
Sbjct: 500 KWQAPLEGFLKVNVDGAIFADQRKAGIGVVLRDTNGAILMAASKIEMEVDEAATIEAIAI 559

Query: 71  VEGLK-SIPISSPKLIIELDSVQVVHQLEGREVDELSI--FIEEANALMANLQIQAVTHV 130
           + G++ S+P+  PKLIIE D + VV +L+  E    S+     + N LM   Q   V HV
Sbjct: 560 LRGIQLSLPLGIPKLIIETDCLHVVQELQSSEASYASVGNLFADINHLMMRFQEAQVIHV 619

Query: 131 SRRRNFLAHHLAQKAHIVKSNSSWSGNFRSWI 160
           +R  N +AH LA+ A  ++  + W     S++
Sbjct: 620 NRMGNGVAHSLARHAWNIEDINVWWDQIPSFV 651

[Close]

BLAST of Lcy11g017340 vs. NCBI nr
Match: XP_042950314.1 (uncharacterized protein LOC122282427 [Carya illinoinensis])

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-10
Identity = 48/152 (31.58%), Postives = 76/152 (50.00%), Query Frame = 0


Query: 11  KWLPPPTGLWKLNSDATWCDRTKSGGIGWILRRCDGTPISAGFRFIVRQWKVAWLEALAV 70
           KW  PP G  K+N D       +  GIG +LR  +G  + A  +  +   + A +E +A+
Sbjct: 549 KWQAPPEGFLKVNVDGAIFADQRKAGIGVVLRDTNGAILMAASKIEMEVDRAATIETIAI 608

Query: 71  VEGLK-SIPISSPKLIIELDSVQVVHQLEGREVDELSI--FIEEANALMANLQIQAVTHV 130
           + G++  +P+  PKLIIE D + VV +L+  E    S      + N LM   Q   V HV
Sbjct: 609 LRGIQLCLPLGIPKLIIETDCLHVVQELQSSEASYASAGNLFADINHLMMRFQEAQVIHV 668

Query: 131 SRRRNFLAHHLAQKAHIVKSNSSWSGNFRSWI 160
           +R  N +AH LA+ A  ++  + W     S++
Sbjct: 669 NRMGNGVAHSLARHAWNIEDINVWWDQIPSFV 700

[Close]

BLAST of Lcy11g017340 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.4e-06
Identity = 38/151 (25.17%), Postives = 66/151 (43.71%), Query Frame = 0


Query: 4   SDGTLPLKWLPPPTGLWKLNSDATWCDRTKSGGIGWILRRCDGTPISAGFRFIVRQWKVA 63
           +D +   KW PP     K N DA+  +R    G+GWILR   GT I  G      +    
Sbjct: 97  ADPSRNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTE 156

Query: 64  WLEALAVVEGLK-SIPISSPKLIIELDSVQVVHQLEGREVD-ELSIFIEEANALMANLQI 123
             E   ++  ++ S      K+I E D+  +   +  +  +  L  F++   + + + + 
Sbjct: 157 EAECSTLIWAIQASYGFGHKKVIFEGDNQTITRMINTKSSNPRLQHFLDTIQSWIPSFES 216

Query: 124 QAVTHVSRRRNFLAHHLAQKAHIVKSNSSWS 153
              +   R +N  A  LA++A  +K N+ WS
Sbjct: 217 IEFSFKHREQNGCADFLAKQA--IKENTQWS 245

The following BLAST results are available for this feature:

BLAST of Lcy11g017340 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g017340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	1.6e-18	39.35	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CP26	1.7e-15	37.78	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DSV1	1.7e-15	37.06	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J5UAY2	1.6e-10	28.22	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
A0A4Y1R838	2.8e-10	32.18	Ribonuclease H-like superfamily protein OS=Prunus dulcis OX=3755 GN=Prudu_010255...	[more]

BLAST of Lcy11g017340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	3.4e-18	39.35	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022156777.1	3.5e-15	37.06	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022143535.1	3.5e-15	37.78	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_042983365.1	8.8e-11	32.24	uncharacterized protein LOC122312778 [Carya illinoinensis]	[more]
XP_042950314.1	1.5e-10	31.58	uncharacterized protein LOC122282427 [Carya illinoinensis]	[more]

BLAST of Lcy11g017340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65005.1	1.4e-06	25.17	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 23..142 e-value: 5.7E-16 score: 58.4
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 18..143 e-value: 4.3E-11 score: 45.0
None	No IPR available	PANTHER	PTHR47723	OS05G0353850 PROTEIN	coord: 8..160
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 22..139 e-value: 2.79147E-12 score: 58.8648
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 19..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g017340.1	Lcy11g017340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity