Lcy11g017310 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g017310
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Zinc finger BED domain-containing protein RICESLEEPER 2-like
Location	Chr11: 43088233 .. 43090185 (-)
RNA-Seq Expression	Lcy11g017310
Synteny	Lcy11g017310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAGGATATTTTGGCAATTCCACTTTCTACTGTAGCCTCAGAATCAGCTTTCTCTACTGGAGGTAGAGTACTTGATCCATCTCGTAGTACTCTATCTCCAACTACAATTGAAACACTCGTCTGCTTGCAAAATTGGATTCGCTCATCACCTATTAGTAACATTGAGGAGATTATCGAAGGTGCTCCCGATGAAATAGCTAGCGAAGATCGTAGAAGGTAATAAATTTCTATTATTCTAATTTTCTCATTTTTTTATTGACTTATATTGTGTTGTACTATATTATTATTAACTTTCATTTGTAGAATCTCAATCGGCGAGTAGTGGAATTACCACAATTGATGAATGAGGAAAAATGAGGGATGAAAAATAAATCGGTTAGTACACTTTTTTAATCTTCTGCTAACTTAATGTTAGTTTTTACTTCAAAGTTGCTAATTATTGATTTTTTGTAGGGTCAATTCATGTTGTATGTATTGTGGAAGGACTTCCATTGTGGACTTCATCGAATTTTATGTCTCATGTCATGTGTATTTTTAGTATTTTATTATGTTGTAATTTGTATAATGGACAATGGACACTGGACTGTATAATGTTTTAAACTTTGGACTTTGAGATAGGTTTTATGTTTGATATGTTTGGATGTAAATCTTATTTTAGAAATGGTTTGAACTTGAATTTGGACATTGTTTGAAGCTTTGAATTTATTAATTATGATATTTGTATGTTTATCTCTATTGTGTTTATTTATTTGAAATCAAACATTTAAAAATTGTTATTCACTAATTAGTTTGACAAAATTAAGTAATTGTATTGAAGAAATTAATTAATTGAAGTTTGAATTGGAAACATGAGTTATAGTGGATTATTGGGCCAAAACTTAAAAGAAAAAAAAAGGGCAATGGGTTGAAATTAGAAGAGAAAATGGGTCATTTTTTAAAAAAATAAAAAGCCCACATTGGGCCCAAAACCGAAAACCGATCCATTGGACAAACCGAACCGAAGAAAAATCGAACCATTGGACATTTCTCATTTTGGACATTGGTTCGGTTTGCGATTTTGAAAAACCGAATGGATCGGTTCGGTTTGCGGTTTGGTCAAAAACCGACAAAACCGAACCGAGTATCACCCCTACCGGTTAGGGAAATCGACTTGGCTCGCGCAGTTCTTGTCATCTTCATCGAATGAGTCGGTTATGGGTTGGTGGAATGGGTGTTGGAAAATGGTGATCCCGAATAAGATTAAGATTTTCATGTGGAGACTTGCTTAGACCGTCTGCCCACAATTGATAATTTGTGTTTTTGGGGTTTGGGTGTGTTGAACGTGTGTGGCCTCTGTGGCTGGAGTGGGGAGTCCAGTTTGCATGTTTTCTGGCATTGTAAGTTTGTTAGGACGGTGTTGACGGATTCTGAGTTTGGAAACTTGATTCATAATGTGCAGGCAAGGTCTATGTTTAATCTCCTTAGAAAGGTGAGGGATAAGGTGGGTTGGGGGAAATTTGAGTTGTTTGTGGTGGTGCTGTGGGCCGTGTGGAATTGCCGCAATCACTAGAAATTAAAGGGTCTGGAGCCAGTGGTGGGACTAGTGGAGTGGGCGGTGAGTTATATCTCGTTGTTTCAACAGGCGGCCTCGTCTTGTGGGTTAGGGGTGCGGAGTGGCCTTGTAAGGGAGGATGTGAGATGGAGCCCCCCCGGAGGTTGGGTGGTATAAGGTGAATGTAGATGTGTCTTTTAGAAGGGAGCGATGGCAGGCGGGTTTGGGTGTGGTGGTTTGGGATTTTGCCGGACGGGTTATGCTGTTTGCAACATTGGTGCAGCGGCACGTGCGAAGTCCGGAGATGGCCGAAGGATGGGCTGCAGTGAAGGGGATGAGATTGGCAGTGGAAATGGGTCAAGTTCCATTGGTGTTGGAGACGGATTCCAGTCGAGTGGCTGTCATTTTTTAGGATGA

mRNA sequence

ATGGCTAAGGATATTTTGGCAATTCCACTTTCTACTGTAGCCTCAGAATCAGCTTTCTCTACTGGAGGTAGAGTACTTGATCCATCTCGTAGTACTCTATCTCCAACTACAATTGAAACACTCGTCTGCTTGCAAAATTGGATTCGCTCATCACCTATTAGTAACATTGAGGAGATTATCGAAGGTGCTCCCGATGAAATAGCTAGCGAAGATCGTAGAAGGACGGTGTTGACGGATTCTGAGTTTGGAAACTTGATTCATAATGTGCAGGCAAGGTCTATGTTTAATCTCCTTAGAAAGGTGAGGGATAAGAAGGGAGCGATGGCAGGCGGGTTTGGGTGTGGTGGTTTGGGATTTTGCCGGACGGGTTATGCTGTTTGCAACATTGGTGCAGCGGCACGTGCGAAGTCCGGAGATGGCCGAAGGATGGGCTGCAGTGAAGGGGATGAGATTGGCAGTGGAAATGGGTCAAGTTCCATTGGTGTTGGAGACGGATTCCAGTCGAGTGGCTGTCATTTTTTAGGATGA

Coding sequence (CDS)

ATGGCTAAGGATATTTTGGCAATTCCACTTTCTACTGTAGCCTCAGAATCAGCTTTCTCTACTGGAGGTAGAGTACTTGATCCATCTCGTAGTACTCTATCTCCAACTACAATTGAAACACTCGTCTGCTTGCAAAATTGGATTCGCTCATCACCTATTAGTAACATTGAGGAGATTATCGAAGGTGCTCCCGATGAAATAGCTAGCGAAGATCGTAGAAGGACGGTGTTGACGGATTCTGAGTTTGGAAACTTGATTCATAATGTGCAGGCAAGGTCTATGTTTAATCTCCTTAGAAAGGTGAGGGATAAGAAGGGAGCGATGGCAGGCGGGTTTGGGTGTGGTGGTTTGGGATTTTGCCGGACGGGTTATGCTGTTTGCAACATTGGTGCAGCGGCACGTGCGAAGTCCGGAGATGGCCGAAGGATGGGCTGCAGTGAAGGGGATGAGATTGGCAGTGGAAATGGGTCAAGTTCCATTGGTGTTGGAGACGGATTCCAGTCGAGTGGCTGTCATTTTTTAGGATGA

Protein sequence

MAKDILAIPLSTVASESAFSTGGRVLDPSRSTLSPTTIETLVCLQNWIRSSPISNIEEIIEGAPDEIASEDRRRTVLTDSEFGNLIHNVQARSMFNLLRKVRDKKGAMAGGFGCGGLGFCRTGYAVCNIGAAARAKSGDGRRMGCSEGDEIGSGNGSSSIGVGDGFQSSGCHFLG

Homology

[Close]

BLAST of Lcy11g017310 vs. ExPASy Swiss-Prot
Match: P08770 (Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 7.7e-09
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 1   MAKDILAIPLSTVASESAFSTGGRVLDPSRSTLSPTTIETLVCLQNWIRSS 52
           +A+D+LAI +STVASESAFS GGRV+DP R+ L    +E L+C ++W+ +S
Sbjct: 704 IARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWVAAS 754

[Close]

BLAST of Lcy11g017310 vs. ExPASy Swiss-Prot
Match: P03010 (Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.7e-09
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 1   MAKDILAIPLSTVASESAFSTGGRVLDPSRSTLSPTTIETLVCLQNWIRSS 52
           +A+D+LAI +STVASESAFS GGRV+DP R+ L    +E L+C ++W+ +S
Sbjct: 673 IARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWVAAS 723

[Close]

BLAST of Lcy11g017310 vs. ExPASy Swiss-Prot
Match: Q75HY5 (Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0583200 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.4e-05
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 1   MAKDILAIPLSTVASE----SAFSTGGRVLDPSRSTLSPTTIETLVCLQNWIRSSP 53
           MA+D+LAIP+S V+S     SA +TG ++LD  RS+L P T+E L C ++W++  P
Sbjct: 682 MARDVLAIPMSMVSSGSSIFSATATGSQMLDDYRSSLRPETVEALFCAKDWLQYPP 737

[Close]

BLAST of Lcy11g017310 vs. ExPASy Swiss-Prot
Match: Q6AVI0 (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.8e-05
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 1   MAKDILAIPLSTVAS-ESAFS--TGGRVLDPSRSTLSPTTIETLVCLQNWIRSSP 53
           MA+DILAIP+S V+S  S FS  TG R+LD  RS+L P  +E LVC ++W++  P
Sbjct: 652 MARDILAIPMSMVSSGNSIFSAGTGTRMLDDYRSSLRPEIVEALVCAKDWLQYLP 706

[Close]

BLAST of Lcy11g017310 vs. ExPASy Swiss-Prot
Match: Q0JMB2 (Zinc finger BED domain-containing protein RICESLEEPER 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0518400 PE=2 SV=3)

HSP 1 Score: 48.9 bits (115), Expect = 6.8e-05
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 1   MAKDILAIPLSTVASESAF---STGGRVLDPSRSTLSPTTIETLVCLQNWIRSSP 53
           MA+D+LAIP+STV   S+      G R LD  RS+L P  +E L+C ++W++ SP
Sbjct: 630 MARDVLAIPMSTVGVGSSVFLPDNGSRSLDDYRSSLRPELVEALLCAKDWLQYSP 684

[Close]

BLAST of Lcy11g017310 vs. ExPASy TrEMBL
Match: A0A803MZ47 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.7e-15
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1   MAKDILAIPLSTVASESAFSTGGRVLDPSRSTLSPTTIETLVCLQNWIRSSPISNIEEII 60
           MA+DILA+ +STVASESAFSTGGRVLDP RS+L+P  +E LVC QNW+RSSP  NIEE +
Sbjct: 607 MARDILAVSISTVASESAFSTGGRVLDPFRSSLTPRVVEGLVCAQNWLRSSPFPNIEECL 666

Query: 61  EGAPD 66
           +   D
Sbjct: 667 QEVED 671

[Close]

BLAST of Lcy11g017310 vs. ExPASy TrEMBL
Match: A0A803LM96 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.7e-15
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1   MAKDILAIPLSTVASESAFSTGGRVLDPSRSTLSPTTIETLVCLQNWIRSSPISNIEEII 60
           MA+DILA+ +STVASESAFSTGGRVLDP RS+L+P  +E LVC QNW+RSSP  NIEE +
Sbjct: 526 MARDILAVSISTVASESAFSTGGRVLDPFRSSLTPRVVEGLVCAQNWLRSSPFPNIEECL 585

Query: 61  EGAPD 66
           +   D
Sbjct: 586 QEVED 590

[Close]

BLAST of Lcy11g017310 vs. ExPASy TrEMBL
Match: A0A803LUT9 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 9.8e-15
Identity = 44/86 (51.16%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 1   MAKDILAIPLSTVASESAFSTGGRVLDPSRSTLSPTTIETLVCLQNWIRSSPISNIEEII 60
           +A+D+LA+P+STVASESAFSTGGRVLD  RS+L+P  +E LVC QNW+R+SP  +IEE +
Sbjct: 321 IARDVLAVPVSTVASESAFSTGGRVLDQFRSSLTPRVVEGLVCAQNWLRASPFPSIEECL 380

Query: 61  EGAPDEIASEDRRRTVLTDSEFGNLI 87
           E    E+  ED +   + D++   ++
Sbjct: 381 EEV--ELLEEDLKNMAIGDADIDEVL 404

[Close]

BLAST of Lcy11g017310 vs. ExPASy TrEMBL
Match: A0A803MP68 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-14
Identity = 44/86 (51.16%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 1   MAKDILAIPLSTVASESAFSTGGRVLDPSRSTLSPTTIETLVCLQNWIRSSPISNIEEII 60
           +A+D+LA+P+STVASESAFSTGGRVLD  RS+L+P  +E LVC QNW+R+SP  +IEE +
Sbjct: 614 IARDVLAVPVSTVASESAFSTGGRVLDQFRSSLTPRVVEGLVCAQNWLRASPFPSIEECL 673

Query: 61  EGAPDEIASEDRRRTVLTDSEFGNLI 87
           E    E+  ED +   + D++   ++
Sbjct: 674 EEV--ELLEEDLKNMAVGDADIDEVL 697

[Close]

BLAST of Lcy11g017310 vs. ExPASy TrEMBL
Match: A0A803MZH0 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-14
Identity = 44/86 (51.16%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 1   MAKDILAIPLSTVASESAFSTGGRVLDPSRSTLSPTTIETLVCLQNWIRSSPISNIEEII 60
           +A+D+LA+P+STVASESAFSTGGRVLD  RS+L+P  +E LVC QNW+R+SP  +IEE +
Sbjct: 614 IARDVLAVPVSTVASESAFSTGGRVLDQFRSSLTPRVVEGLVCAQNWLRASPFPSIEECL 673

Query: 61  EGAPDEIASEDRRRTVLTDSEFGNLI 87
           E    E+  ED +   + D++   ++
Sbjct: 674 EEV--ELLEEDLKNMAVGDADIDEVL 697

[Close]

BLAST of Lcy11g017310 vs. NCBI nr
Match: XP_021743518.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Chenopodium quinoa])

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-14
Identity = 44/86 (51.16%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 1   MAKDILAIPLSTVASESAFSTGGRVLDPSRSTLSPTTIETLVCLQNWIRSSPISNIEEII 60
           +A+D+LA+P+STVASESAFSTGGRVLD  RS+L+P  +E LVC QNW+R+SP  +IEE +
Sbjct: 160 IARDVLAVPVSTVASESAFSTGGRVLDQFRSSLTPRVVEGLVCAQNWLRASPFPSIEECL 219

Query: 61  EGAPDEIASEDRRRTVLTDSEFGNLI 87
           E    E+  ED +   + D++   ++
Sbjct: 220 EEV--ELLEEDLKNMAIGDADIDEVL 243

[Close]

BLAST of Lcy11g017310 vs. NCBI nr
Match: XP_021734194.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Chenopodium quinoa])

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-14
Identity = 44/86 (51.16%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 1   MAKDILAIPLSTVASESAFSTGGRVLDPSRSTLSPTTIETLVCLQNWIRSSPISNIEEII 60
           +A+D+LA+P+STVASESAFSTGGRVLD  RS+L+P  +E LVC QNW+R+SP  +IEE +
Sbjct: 405 IARDVLAVPVSTVASESAFSTGGRVLDQFRSSLTPRVVEGLVCAQNWLRASPFPSIEECL 464

Query: 61  EGAPDEIASEDRRRTVLTDSEFGNLI 87
           E    E+  ED +   + D++   ++
Sbjct: 465 EEV--ELLEEDLKNMAVGDADIDEVL 488

[Close]

BLAST of Lcy11g017310 vs. NCBI nr
Match: XP_021730798.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Chenopodium quinoa])

HSP 1 Score: 89.4 bits (220), Expect = 3.4e-14
Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1   MAKDILAIPLSTVASESAFSTGGRVLDPSRSTLSPTTIETLVCLQNWIRSSPISNIEEII 60
           +A+D+LA+P+STVASESAFSTGGRVLD  RS+L+P  +E LVC QNW+R+SP  +IEE +
Sbjct: 614 IARDVLAVPVSTVASESAFSTGGRVLDQFRSSLTPRVVEGLVCAQNWLRASPFPSIEECL 673

Query: 61  EGAPDEIASEDRRRTVLTDSEFGNLI 87
           E    E+  ED +   + D +   ++
Sbjct: 674 EEV--ELLEEDLKNMAVGDDDIDEVL 697

[Close]

BLAST of Lcy11g017310 vs. NCBI nr
Match: XP_021742408.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Chenopodium quinoa])

HSP 1 Score: 89.0 bits (219), Expect = 4.5e-14
Identity = 43/65 (66.15%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1   MAKDILAIPLSTVASESAFSTGGRVLDPSRSTLSPTTIETLVCLQNWIRSSPISNIEEII 60
           MA+DILA+P+STVASESAF+TGGRVLDP RS+L+   +E LVC QNW+RSSP  NIEE +
Sbjct: 338 MARDILAVPISTVASESAFNTGGRVLDPFRSSLTLRVVEGLVCAQNWLRSSPFPNIEECL 397

Query: 61  EGAPD 66
           +   D
Sbjct: 398 QEVED 402

[Close]

BLAST of Lcy11g017310 vs. NCBI nr
Match: XP_021742409.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2 [Chenopodium quinoa])

HSP 1 Score: 89.0 bits (219), Expect = 4.5e-14
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 1   MAKDILAIPLSTVASESAFSTGGRVLDPSRSTLSPTTIETLVCLQNWIRSSPISNIEEII 60
           MA+DILA+P+STVASESAF+TGGRVLDP RS+L+   +E LVC QNW+RSSP  NIEE +
Sbjct: 338 MARDILAVPISTVASESAFNTGGRVLDPFRSSLTLRVVEGLVCAQNWLRSSPFPNIEECL 397

Query: 61  EGAPDEIASEDRRRTVL 78
           +   D    ED R   +
Sbjct: 398 QEVED--LEEDLRNMTI 412

[Close]

BLAST of Lcy11g017310 vs. TAIR 10
Match: AT3G42170.1 (BED zinc finger ;hAT family dimerisation domain )

HSP 1 Score: 45.4 bits (106), Expect = 5.3e-05
Identity = 21/55 (38.18%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 1   MAKDILAIPLSTVASESAFSTGGRVLDPSRSTLSPTTIETLVCLQNWIRSSPISN 56
           MA+DIL+IP+S  A +  F    R +D  +++L P T+E L+C + W+  S  S+
Sbjct: 627 MARDILSIPVSAAAFDYVFDMEPREMDEYKTSLRPETVEALICAREWLLESNASS 681

The following BLAST results are available for this feature:

BLAST of Lcy11g017310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P08770	7.7e-09	54.90	Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2	[more]
P03010	7.7e-09	54.90	Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1	[more]
Q75HY5	1.4e-05	46.43	Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. j...	[more]
Q6AVI0	1.8e-05	52.73	Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. j...	[more]
Q0JMB2	6.8e-05	45.45	Zinc finger BED domain-containing protein RICESLEEPER 4 OS=Oryza sativa subsp. j...	[more]

BLAST of Lcy11g017310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A803MZ47	5.7e-15	67.69	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A803LM96	5.7e-15	67.69	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A803LUT9	9.8e-15	51.16	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A803MP68	1.3e-14	51.16	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A803MZH0	1.3e-14	51.16	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]

BLAST of Lcy11g017310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_021743518.1	2.0e-14	51.16	zinc finger BED domain-containing protein RICESLEEPER 2-like [Chenopodium quinoa...	[more]
XP_021734194.1	2.6e-14	51.16	zinc finger BED domain-containing protein RICESLEEPER 2-like [Chenopodium quinoa...	[more]
XP_021730798.1	3.4e-14	51.16	zinc finger BED domain-containing protein RICESLEEPER 2-like [Chenopodium quinoa...	[more]
XP_021742408.1	4.5e-14	66.15	zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Chenopo...	[more]
XP_021742409.1	4.5e-14	59.74	zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2 [Chenopo...	[more]

BLAST of Lcy11g017310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G42170.1	5.3e-05	38.18	BED zinc finger ;hAT family dimerisation domain	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008906	HAT, C-terminal dimerisation domain	PFAM	PF05699	Dimer_Tnp_hAT	coord: 1..48 e-value: 5.1E-15 score: 55.0
None	No IPR available	PANTHER	PTHR23272:SF145	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE	coord: 1..56
None	No IPR available	PANTHER	PTHR23272	BED FINGER-RELATED	coord: 1..56
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g017310.1	Lcy11g017310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity