Lcy11g016610 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g016610
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein ROOT PRIMORDIUM DEFECTIVE 1
Location	Chr11: 40085222 .. 40092238 (+)
RNA-Seq Expression	Lcy11g016610
Synteny	Lcy11g016610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAAGAAGCTTAGGTATTGGAATCCTAGGCTCTCATCTCCTTATGCCTTCAAATACTTCCTTAGGAATTTTTCTCTATGGTCAATGAAGAAAGACCCCGACCTTGAATCAGCTCTATCTCGTAACCGTCGATGGATTGTCAATAACCAAATAAAAAATATCATCCTTCCTTGTCCTAATCAGACAGCACCAGTAAAGTTTCTCCAGAAGAAGTTTAAAACCCTTGACCTTCAAGGAAAAGCCCTTAACTGGCTGAAAAAGTATCCTTGCTGCTTTGAAGTTTATCTCCACGATGATGAGTACTACTTTCGGCTGACAAAGAGGATGATGGCTTTGGTTGAGGAGGAAGAAACTGTCAAAGATATGCAGGAGCCCATTTTTGTTGAGCGATTGGCTAAGTTGCTGATGATGGCTTCAAATCAGAGACTAAATGTTGTAAAGCTTGGTGAATTGAGGCGGAATTTTGGGCTTCAAATCAGAGACTAAATGTTGCAAACATGGGGTTGAGCCAGCTTTCTCCTGCTCACTGCCAACAACTTGGGTAAATTCATGGGAAAGGTTTCATGAATTGAATGCCTCTCCACCGTATGTAAACCCCAGAGGCTTGGTGCAAGGTACAAAGGAGAGGGAAAAGAGGACAGTGGGGTTGATTCATGAGATATTGTCGTTGACTTTATGGGAAAAAGCATCAATTATGAAACTTGGCCATTTCAGCAGGGAATTCGGTCTGCCAGCGAAATTGAACACATTGCTGCTTAAGCACCCTGGCATATTCTATGTCTCAAACAAGTATCAGATTTACACTGTTCTTCTTAGAGAAGGATATAATGGATCAGTACTAATTGACAAAGATTCACTAGTGGTTGTAAAAGACAAGTATCAGATTTACACTGTTTCTGTTCTTTTATGGCATGTAAGTTCAGGATGATGAGAGTCTGAGGAGGTGGAAGGAACAGCTTCTTGCGGTTGTGGATTTAGAAAATGCTGGAGGTAATTAGAATTTAGAATCCAGTGTCTTTTGTCATTATTCTGAAATGCTTCTGTGAAGTTATCTTGAGGTATCTGCAGCCATATATTTCCCCTTTGTCCAAAGGGAAAGTTGTTGTTACTGGATTCAAATGTTGTTTCTTACTCTTTGTTGTTGGTTTTTAGTTTATGCTTTCTGCTCAATGAATTTGGTTCTTCTGTACGTGATGACACTTATGCTTTGAAGAAGGTACTGATTCAGAGCAGTGAACCATTGGAGCTGGTGAGGGAGGAGATACGTGTTTCGTCGCTTTTTTAGTCATCCCAATCTACTTCCACTTCTAGACCATGCTCTAATTGCAATTAAGGTAGTGGCTGAGATGTTTTTGCTATGTCTGCTGTGAGTTATAAGTGTAATTATATTCTCTTTTTTGGATGAATTTCCAGTTCCCGTGTTGTTACACACTCCTTTGGCTAGAAGTTTTAATGTAAGAAAGCAATAAGAAACTTTGATTCATTTTGACTCACATCTGAATGTCAGCCTTAGACACTCCTACTCTGGACTATGGATGCATGGATTAGTATATGGGTATCACCTTTAATGATACTATACTTTACCCCCTCCTTCCCATCTTTTTCCTAAAGGAGTAAGATTTTAAATGCTGTAAGTTGTGCATTTGCTCTAAATGATACTGAAACTTTGAAGAAATACTATGGAGTTGAAGTGGTAGGAATGTTGTAAAGCAGAGATCGGGTTATGAGAGCCAATGTATCTTCTTTGATAACAAGGTAAGGATATATCGTGAAAACACTATTTTGTTATTGAAATCTATTGTGTCCTATTGTGTGGGGCTTCTTGTTGGTGCATTTATATTGCCCTTCTGTTAATTATCAACCTTGTTATTGTTATCTTGGAATGTGGTATGCTATCTTCTTAGACTACTTTTCTATATAATATTAAAGGTTTTTTCATAGCTCTAAATTGTTAGACTTGTGCTGAAGAATGAAGAAGGAAAGATATAATAGGTAAAAAATGGTTTTTAGATTAGTTGGACACAATGTGGAAAGGAAAACTTTCCTTTCAAGTTTTAGGAGATAGGAGAGTCAAGTGGTGATTGGGGATATACACATTAGTTAGACACAATGTGGAAAGGAAAACTTAAGTTTCATTGTCGTGTTTAATTGTGAAATAAATTTTGTTCTTATAATAGTTTTTGTTTTGTTTTGATTTTTTCTTGTAGGTGAATGAAGAGAGAGCGACACACTATTAATGAGAAAGAATTTGTTAAAGTTGTGTACTTCTTTTATTTAACAATTTTACCTTTTCTTTGTAAATTAGATCATAGATGTGATTTATGGATGGATGGAAAGTTTCATGTATATACACTATTATATTTTATTAATTAAATATATGTTTGTTGAGTTAAATGTTGTGTAAAAATACTTTTGGGATTTTATTGTGTATAGGTTGATAAATGGAGAAATGAATAAATAGTGATATATCACTATTTATGATGGTTTATCAAAGTCATAAAAATTATTTGGGTGACAATTGTTCATCATCATTATAAGCATTTTTGTGACGTTCAAAACTATCATGTCATATTTTTTGTTGACATTGTAGAATTGTCAAGAGAAATATTGACGTGACAATTTAAAAATGTCATTATAAATTTTTTATTGACGGTAGTGAACTGTCATTAATATATATATCTTGACAGTAAATTAGTTTTTATTAGGTTTTTAATGATATTGTAAAATTGTCATTAAACAAATTATTGTGACGTTAAAATTATGTCAAGAAAAAATTGTAGTTTGACAGTTTTTAACTGTCATAATTAATATATTTGTGACAGTTTTTTTGAATCGTCATGTATTGAGCTTTCTTGAGGGTCGATTCAATGACTACAAAAAAATGTCAAGAAATACGTTTTTGACATTTTTTCAATGTCATGAAAAGTCAAATTTGTAGTAGTGGTGTTATAATTTAATTATGAATTAAACTATAGAGAGAGTTGGAAATATTTAAATGTAATTTAAATATAGTTAAATATGTATTTGATACATTTGTTGGTTTGAAATTGAATAGTGATTCATATTCAAACGATCAGTTTCTTAGAGAGATTGGGATCGATACGTCATTCAATTTAATATATGATATTAAATTAAATAGAAATAATTTAATTAAAATGTTTAATTAATGATTTAAATTAATTTAATTTTAAAATTAATTATATTTAATTAATGTTATTTGAAATTGATTATATAATTAAGATTGAAATTCAAAGGTGTTGTAATCTTATGAATTCTTTGCATGCAAAATTCATTTGATTGACACTGACTTATCAATCCCAAATAGTAACTTGCCTCTTCATATATATACATGGTATATGAATTAAAACAACAACTGAAGTTTTCCCAAAGGGTTGTGAAATGATCTCTCTCCAAAAAAAAAAAAAAAACAATGAAACTCTATAAAAATACCCATATTTTCCTTCAAAGAATTCATCACAATTCGGCTCCCACAAGCCCGTTCTAAGGCCGGAGAATAGCACGAAAGATCTCGGTGGTCGTCCACAACGTATTCGTGTTGAGAATCATCCAACGAAATGCTTGGAATCGAGCTACAAAAGTAAGTTTTTGGTTGCTCTGTTTTCAGTCATTTTAAGAGCATGCTTTTGATTAAGAAATTAATGAAATTAAACGCCAAAGATCGTTAATTGCTTCCGCTAGAGTGATATACACTCCTTCAGAAGCAAGATTGAAAATCTTGTTCTAGATTGAGTCATTCCACAATCAAACGTGATCAAGGCTGGATTGAATAGCTCAACATGCAATCTATCACAAGAATTGCAAGAAACTTAGAAAAGGGATTTCTGAGAAAAAGTATCTTACTTGAGAGAACAAATTTCATTAATCTTAATCTGTGAATTACATGTCTTGGTTGTGGCTTTTTATAGCCTTTATGTAAATGAAACCCCCAACCCTTCAGTTTCCCAAAATAAAACCTACAAAGCATTCATGCCCATAATTAACCTACAAAGTAACTCCCCATAATTGAATGCTAGCTTTGAAACCATATTTTGGAAGCCCAAAAGTTCAAAAATTACAAGCAAACGTTGATGACTTAAAATAACAAATGTGTCTTCAAAATAAGGACACTTGGAACACTATAATAAAAAAAAACATTTTTAAAAAAAATCTATTTCTTATTTATTTATGAAAAGTTGGTTAAATTACAAATTTGGTCCATATAGGACAAACTTTCAATTTGGTCACTATAGTTTTAAAAGCTTCAAGTTAGTCAGTATGATTTGAGTTTAACTCCAAATTGGTCTCTATAATTTGGATTTAGTTTCAATTTAGTCTCTAGTTTCAAAAGTTTCAATTTGATTCCTATAGTCTTAGTAAGAGTTTACAATCTTTACCATCATCACATTGACAATTTTTTTTTTTGGAAAAATACACTTTTGGTCCTTGAGGTTTGGGTTAGGTTTCATTTTGGTCCTTGAGTTTTCAAACTCAATAATTTAGCTCCTGGGGTTTGGTTTTAGTTTCATTTTGGTCCCTCCATCCATTTTTCCGTTAGAACTTAACTGAATGCTGACATGACACCTATTTTCTATTAATAAATTATTTTTAAATTTTTTTAAAAATAAAATAATATTTAATTAATAATATTTTATTATTTTCATTTTCTTATTCACCTTTATCACCTTCTTCACCTTCACATCACCACTGTTGGGTTTTGTGTCCTAAAACTCGTGGTTTGTAATCTTTATGCATATCTCTTGTTTGCAATGAAGATGTTATGGTATTGTTCAGTGAATTACTTGTTTATATAACCTAAAATCTAGTAGTTTAAAGATCCTTGGTTATTATATGAATACTCGAACTATATGTATAACCATAAACATGGATCTAGTTCTAGTATATAGCCAAAATGGTCTATAGTATATAGATAAGGCTAGATTTCCTTATCCTGGGGACACTATGGATGCGACCTACTTTGCACGTAAGGCAAACAATGTGATCCTGAATCGTTCATGTAAAGACATGCGAGTGGGGGCATCTTGTGCAATGAGTTTGCACAAGACTGGACCGAGAAATGAGTCACTCTTACTTTATAACGTCGTTTACTAATAAGACTGATTATTTCATACGATGACCTAGGTAACTCGATCTTAATCCTGAGCTAACTATGAACTCCTGTTTGTTTAGGATTATCCTTTGATTTACACGGGTGAGAGTGACCCAACATCGCCAGCTCAATAAGTCTGCCATTTTGGGGATAAGACTGGATAGATAGCTAGGGACGTAGTCCTACAAGATGGAATTCACTCTTACCCGTATTAGGGATAGTAGAAAGGTTGTTCTCTTTAAGTACTGAGTCCAGGAATTAAGCAAGGGGCCCCACCCTCTCATTGGCCTGAGAGGGACACAATTTGATGGTTATATCACAAACCAATTGTTCATCAGAAGATCAGTGAGACTTAAGGAACAAAGAAGTGCTATACAGGTAAAATGGGCAGTTGACCTAGCTATAGTTACAAACAACCTATGAAGGGTCGACTTACTAATCATGGTTATATCGAGTGGATAAAAACATATCTATAGTGATCAGGAGAGTGCAACTACTAGGCTATAGTGGAGTGACCTGATAGTTAACGAATGTTGGTTAAACTAGGTTAATGAGTTTAACCGGTTAAACCTCGAATCGTTGGAGCCCATGATCTGTAGGTTCATTAGGTCCCCTTGCTAGCTCGTATAGGAACAAACCTTGGAACAATATGATGGAAAGAATTCGAATTGCTCAAATTCAATTTAGGAATTATATCGGTCATATTGGATATTACCGACACACTGGTTTAATCCTGAATTAAACATAAATTTGAGAGTTAGACATATTTAAATATGATTTAAACATCAAGCACGTGAATAGAAATTCATGTTTGGGAAATTAAGTTTCGAGAATAGCAAAAACTGAAGAAAATTGGAAGAATCTCAAGGGCTTCAGAAATTTTTTAAAAAACAAGGTGAATACTAAATCTCAGTTTTCGAATTAAGTTTAAGGGAAATAGTGAATAATGATTTCTTCTTGTTTTTTTAGACGATTTGATGTTTACCATAGTGAAATTATTTGCATGTTGTCTAATAGGTTAGTTTACTATATACATTGTATTTGCATAATTTGTTTACTGAATACAATGTATTTGCATAGTTTTTCTTTTTATAAACTTGAATTTTTTTTATTGTTCCAGTAACATTTGTGAGTAATGATTTCTTCTCGTTTTTTCAAGATGATTGAAATTATTTGAAAGTTTACTGAATACACCTTGAAGTTAGGTTATTGAATACCCAACGAGACATATCTAGTAAGAGTTTGGAAAAGAAAATAGGGTTTTGTGTGTAAATGAATTTAGTAGTTTAAATACACACAAAGTTTACCCATTCAATCATTTTCCTGCACTCCCTAATTTTAAGGTAAAAGTTAACATTTTTTTTTTTAATTCTACCACTTTCTTCCATAATTCATGCTAATTGGTTGATTTTTTGTTATCTTATTTATTACGTTTGTTAAATTTGAATGATTAATGGGTCGTTAAATTAAGGGTAGACCTTAGATTCTCTTCTAAATTTATGTTATATTTGTATTTATAGTTCACTAGATTTATATTTAAAATTATTGATTCATAAGATTTAAATTTTGTTTAGGGATATTTTCGTCCGATCTGTTGTAAAAAAAACCTACTAAAAATAGCAATTCACCATTTTTCAAATGAAAAAAATGATATGTCCATTAGACTTTTACTTAGAGTTGGAATGTGAATTTAGGCCGACAACAAATCCGGCCTATACCAATGGGCTGATTACATCCTTGAAATCGGCTTTCTTCCCCAGCCCATCAAAATTGAAGCTCTCCGCAAATGGGAATGGCCTCAACCTCATCATTCCAGAGCCATTGATTTTGGAAGCCCAAAGGCGCCATCGACGACCATTGCTGTCAGGGCACAGAAACCAACGCTCTGGTCTATTCGATCATCTTGA

mRNA sequence

ATGCTGAAGAAGCTTAGGTATTGGAATCCTAGGCTCTCATCTCCTTATGCCTTCAAATACTTCCTTAGGAATTTTTCTCTATGGTCAATGAAGAAAGACCCCGACCTTGAATCAGCTCTATCTCGTAACCGTCGATGGATTGTCAATAACCAAATAAAAAATATCATCCTTCCTTGTCCTAATCAGACAGCACCAGTAAAGTTTCTCCAGAAGAAGTTTAAAACCCTTGACCTTCAAGGAAAAGCCCTTAACTGGCTGAAAAAGTATCCTTGCTGCTTTGAAGTTTATCTCCACGATGATGAGTACTACTTTCGGCTGACAAAGAGGATGATGGCTTTGGTTGAGGAGGAAGAAACTGTCAAAGATATGCAGGAGCCCATTTTTGTTGAGCGATTGGCTAAGTTGCTGATGATGGCTTCAAATCAGAGACTAAATGTTGTAAAGCTTGCTTTCTCCTGCTCACTGCCAACAACTTGGGTAAATTCATGGGAAAGGTTTCATGAATTGAATGCCTCTCCACCGTATGTAAACCCCAGAGGCTTGGTGCAAGGTACAAAGGAGAGGGAAAAGAGGACAGTGGGGTTGATTCATGAGATATTGTCGTTGACTTTATGGGAAAAAGCATCAATTATGAAACTTGGCCATTTCAGCAGGGAATTCGGTCTGCCAGCGAAATTGAACACATTGCTGCTTAAGCACCCTGGCATATTCTATGTCTCAAACAAGTATCAGATTTACACTGTTCTTCTTAGAGAAGGATATAATGGATCAGTACTAATTGACAAAGATTCACTAGTGGTTGTAAAAGACAAGTATCAGATTTACACTGTTTCTGTTCTTTTATGGCATGCCGACAACAAATCCGGCCTATACCAATGGGCTGATTACATCCTTGAAATCGGCTTTCTTCCCCAGCCCATCAAAATTGAAGCTCTCCGCAAATGGGAATGGCCTCAACCTCATCATTCCAGAGCCATTGATTTTGGAAGCCCAAAGGCGCCATCGACGACCATTGCTGTCAGGGCACAGAAACCAACGCTCTGGTCTATTCGATCATCTTGA

Coding sequence (CDS)

ATGCTGAAGAAGCTTAGGTATTGGAATCCTAGGCTCTCATCTCCTTATGCCTTCAAATACTTCCTTAGGAATTTTTCTCTATGGTCAATGAAGAAAGACCCCGACCTTGAATCAGCTCTATCTCGTAACCGTCGATGGATTGTCAATAACCAAATAAAAAATATCATCCTTCCTTGTCCTAATCAGACAGCACCAGTAAAGTTTCTCCAGAAGAAGTTTAAAACCCTTGACCTTCAAGGAAAAGCCCTTAACTGGCTGAAAAAGTATCCTTGCTGCTTTGAAGTTTATCTCCACGATGATGAGTACTACTTTCGGCTGACAAAGAGGATGATGGCTTTGGTTGAGGAGGAAGAAACTGTCAAAGATATGCAGGAGCCCATTTTTGTTGAGCGATTGGCTAAGTTGCTGATGATGGCTTCAAATCAGAGACTAAATGTTGTAAAGCTTGCTTTCTCCTGCTCACTGCCAACAACTTGGGTAAATTCATGGGAAAGGTTTCATGAATTGAATGCCTCTCCACCGTATGTAAACCCCAGAGGCTTGGTGCAAGGTACAAAGGAGAGGGAAAAGAGGACAGTGGGGTTGATTCATGAGATATTGTCGTTGACTTTATGGGAAAAAGCATCAATTATGAAACTTGGCCATTTCAGCAGGGAATTCGGTCTGCCAGCGAAATTGAACACATTGCTGCTTAAGCACCCTGGCATATTCTATGTCTCAAACAAGTATCAGATTTACACTGTTCTTCTTAGAGAAGGATATAATGGATCAGTACTAATTGACAAAGATTCACTAGTGGTTGTAAAAGACAAGTATCAGATTTACACTGTTTCTGTTCTTTTATGGCATGCCGACAACAAATCCGGCCTATACCAATGGGCTGATTACATCCTTGAAATCGGCTTTCTTCCCCAGCCCATCAAAATTGAAGCTCTCCGCAAATGGGAATGGCCTCAACCTCATCATTCCAGAGCCATTGATTTTGGAAGCCCAAAGGCGCCATCGACGACCATTGCTGTCAGGGCACAGAAACCAACGCTCTGGTCTATTCGATCATCTTGA

Protein sequence

MLKKLRYWNPRLSSPYAFKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILPCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYLHDDEYYFRLTKRMMALVEEEETVKDMQEPIFVERLAKLLMMASNQRLNVVKLAFSCSLPTTWVNSWERFHELNASPPYVNPRGLVQGTKEREKRTVGLIHEILSLTLWEKASIMKLGHFSREFGLPAKLNTLLLKHPGIFYVSNKYQIYTVLLREGYNGSVLIDKDSLVVVKDKYQIYTVSVLLWHADNKSGLYQWADYILEIGFLPQPIKIEALRKWEWPQPHHSRAIDFGSPKAPSTTIAVRAQKPTLWSIRSS

Homology

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BLAST of Lcy11g016610 vs. ExPASy Swiss-Prot
Match: A0MFS5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01037 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.7e-18
Identity = 51/129 (39.53%), Postives = 73/129 (56.59%), Query Frame = 0


Query: 143 RLNVVKLAFSCSLPTTWVNSWERFHELNASPPYVNPRGLVQGTKEREKRTVGLIHEILSL 202
           + N VKL    +L  +      +F ++    PY +   L  GT E+EK   G+IHE+LSL
Sbjct: 274 KFNRVKLPRGLNLSKSETRKISQFRDMQYISPYKDFSHLRSGTLEKEKHACGVIHELLSL 333

Query: 203 TLWEKASIMKLGHFSREFGLPAKLNTLLLKHPGIFYVSNKYQIYTVLLREGYNGSVLIDK 262
           T  ++  +  L HF  EF    +L  +L++HP +FYVS K +  +V LRE Y  S LIDK
Sbjct: 334 TTEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDLFYVSLKGERDSVFLREAYRNSELIDK 393

Query: 263 DSLVVVKDK 272
           D L +VK+K
Sbjct: 394 DPLTLVKEK 402

[Close]

BLAST of Lcy11g016610 vs. ExPASy Swiss-Prot
Match: Q65XL5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.8e-17
Identity = 81/325 (24.92%), Postives = 140/325 (43.08%), Query Frame = 0


Query: 31  KKDPDLESALSRNRRWIVNNQIKNIILPCPNQTAPVKFLQKKFKTLDLQGK--ALNWLKK 90
           +K+   ++ + R+++  +  +++NI++  P++   ++ L +  + L L  K   +  LK+
Sbjct: 64  RKEIPFDNVIQRDKKLKLVLKLRNILVSNPDRVMSLRDLGRFRRDLGLTRKRRLIALLKR 123

Query: 91  YPCCFEVYLHDDEY--YFRLTKRMMALVEEEETVKDMQEPIFVERLAKLLMMASNQRLNV 150
           +P  FEV + +  Y   FRLT     L  +E  +K+  E + V +L KLLMM+ ++R+ +
Sbjct: 124 FPGVFEV-VEEGVYSLRFRLTPAAERLYLDELHLKNESEGLAVTKLRKLLMMSQDKRILI 183

Query: 151 VKLAF---SCSLPTTW------------------------VNSWE--------------- 210
            K+A       LP  +                        +  W+               
Sbjct: 184 EKIAHLKNDLGLPPEFRDTICLRYPQYFRVVQMDRGPGLELTHWDPELAVSAAEVAEEEN 243

Query: 211 --------------------------------------RFHELNASPPYVNPRGLVQGTK 270
                                                 +F E+    PY +   L  G+ 
Sbjct: 244 RAREEQERNLIIDRPLKFNRVKLPQGLKLSRGEARRVAQFKEMPYISPYSDFSHLRSGSA 303

Query: 271 EREKRTVGLIHEILSLTLWEKASIMKLGHFSREFGLPAKLNTLLLKHPGIFYVSNKYQIY 272
           E+EK   G++HEILSLTL ++  +  L HF  EF     L  +L++HP +FYVS K    
Sbjct: 304 EKEKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQSLRGMLIRHPDMFYVSLKGDRD 363

[Close]

BLAST of Lcy11g016610 vs. ExPASy Swiss-Prot
Match: B6TTV8 (Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.0e-16
Identity = 53/159 (33.33%), Postives = 83/159 (52.20%), Query Frame = 0


Query: 113 LVEEEETVKDMQEPIFVERLAKLLMMASNQRLNVVKLAFSCSLPTTWVNSWERFHELNAS 172
           L EEE   ++ +E        + L++    + N V+L     L         RF E+   
Sbjct: 231 LAEEESRAREAEE--------RNLIIDRPLKFNRVRLPKGLKLTRGEARRIARFKEMPYI 290

Query: 173 PPYVNPRGLVQGTKEREKRTVGLIHEILSLTLWEKASIMKLGHFSREFGLPAKLNTLLLK 232
            PY +   L  G+ E+EK   G++HEILSLT+ ++  +  L HF  EF     L  ++++
Sbjct: 291 SPYADFSHLRSGSDEKEKHACGVVHEILSLTVEKRTLVDHLTHFREEFRFSQSLRGMIIR 350

Query: 233 HPGIFYVSNKYQIYTVLLREGYNGSVLIDKDSLVVVKDK 272
           HP +FYVS K    +V LRE Y  S L++K+ LV++K+K
Sbjct: 351 HPDMFYVSFKGDRDSVFLREAYKDSQLVEKNQLVLLKEK 381

[Close]

BLAST of Lcy11g016610 vs. ExPASy Swiss-Prot
Match: Q689D6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-11
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 189 EKRTVGLIHEILSLTLWEKASIMKLGHFSREFGLPAKLNTLLLKHPGIFYVS---NKYQI 248
           EKR+V  IHE+LSLT+ +K ++ ++ HF     LP KL   LL+H GIFY+S   N  ++
Sbjct: 292 EKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQHQGIFYISTRGNYGKL 351

Query: 249 YTVLLREGYNGSVLIDKDSLVVVK 270
           +TV LREGY    L++ + + + +
Sbjct: 352 HTVFLREGYKRGELVEPNDVYLAR 375

[Close]

BLAST of Lcy11g016610 vs. ExPASy Swiss-Prot
Match: Q9ZUZ6 (Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WTF9 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-09
Identity = 37/107 (34.58%), Postives = 55/107 (51.40%), Query Frame = 0


Query: 166 FHELNASPPYVNPRGLVQGTKEREKRTVGLIHEILSLTLWEKASIMKLGHFSREFGLPAK 225
           F +L    PY +   L   +   EKR VG +HE+L L +   A   KL    + FGLP K
Sbjct: 245 FQKLPYVSPYDDYSCLDPSSDIAEKRVVGFLHELLCLFVEHSAERKKLLCLKKHFGLPQK 304

Query: 226 LNTLLLKHPGIFYVSNKYQIYTVLLREGYNGSVLIDKDSLVVVKDKY 273
           ++    +HP IFY+S K +  T +LRE Y     ++   ++ V+ KY
Sbjct: 305 VHKAFERHPQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRKKY 351

[Close]

BLAST of Lcy11g016610 vs. ExPASy TrEMBL
Match: A0A6J1FG34 (protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111445385 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 4.3e-126
Identity = 240/339 (70.80%), Postives = 254/339 (74.93%), Query Frame = 0


Query: 1   MLKKLRYWNPRLSSPYAFKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILPCP 60
           +L K R+W+PRLSSPY+ K FLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNI+L CP
Sbjct: 5   VLMKSRHWDPRLSSPYSLKCFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIVLRCP 64

Query: 61  NQTAPVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYLHDDEYYFRLTKRMMALVEEEETV 120
           NQTAPVKFLQKKFKTLD QGKALNWLKKYP CFEVYLH+DEYYFRLTKRMMALVEEEET+
Sbjct: 65  NQTAPVKFLQKKFKTLDCQGKALNWLKKYPICFEVYLHNDEYYFRLTKRMMALVEEEETI 124

Query: 121 KDMQEPIFVERLAKLLMMASNQRLNVVKL------------------------------- 180
           KDMQEP FVERLAKLLMMASNQRLNV+KL                               
Sbjct: 125 KDMQEPAFVERLAKLLMMASNQRLNVLKLGELKRIFGLPDDYLIRIVPKHSDMFRIVNYT 184

Query: 181 ---------------------------------AFSCSLPTTWVNSWERFHELNASP--- 240
                                            AFSCSLPTTWVNSWE+FHE NASP   
Sbjct: 185 GKRNSMEIELVSWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEKFHEFNASPYIS 244

Query: 241 PYVNPRGLVQGTKEREKRTVGLIHEILSLTLWEKASIMKLGHFSREFGLPAKLNTLLLKH 273
           PY N  GLV+ TKE EKRTVGLIHEILSLTLW+KASIMKLGHFSREFGLP KLN LLLKH
Sbjct: 245 PYANHAGLVKDTKEMEKRTVGLIHEILSLTLWKKASIMKLGHFSREFGLPLKLNALLLKH 304

[Close]

BLAST of Lcy11g016610 vs. ExPASy TrEMBL
Match: A0A6J1K3L2 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita maxima OX=3661 GN=LOC111489755 PE=4 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 1.2e-125
Identity = 240/339 (70.80%), Postives = 254/339 (74.93%), Query Frame = 0


Query: 1   MLKKLRYWNPRLSSPYAFKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILPCP 60
           +L+K R+W+PRLSSPY+ K FLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNI+L CP
Sbjct: 5   VLQKSRHWDPRLSSPYSLKCFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIVLRCP 64

Query: 61  NQTAPVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYLHDDEYYFRLTKRMMALVEEEETV 120
           NQTAPVKFLQKKFKTLD QGKALNWLKKYP CFEVYLHDDEYYFRLTKRMMALVEEEETV
Sbjct: 65  NQTAPVKFLQKKFKTLDCQGKALNWLKKYPICFEVYLHDDEYYFRLTKRMMALVEEEETV 124

Query: 121 KDMQEPIFVERLAKLLMMASNQRLNVVKL------------------------------- 180
           KDMQEP FVERLAKLLMMASNQRLNV+KL                               
Sbjct: 125 KDMQEPAFVERLAKLLMMASNQRLNVLKLGELRRNFGLPDDYLIRIVPKHSDMFRIVNYT 184

Query: 181 ---------------------------------AFSCSLPTTWVNSWERFHELNASP--- 240
                                            AFSCSLPTTWVNSWE+FHE NASP   
Sbjct: 185 GKRNSMEIELVSWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEKFHEFNASPYIS 244

Query: 241 PYVNPRGLVQGTKEREKRTVGLIHEILSLTLWEKASIMKLGHFSREFGLPAKLNTLLLKH 273
           PY    GLV+ TKE EKRTVGLIHEILSLTLW+KASIMKLGHFSREFGLP KLN LLLKH
Sbjct: 245 PYAIHAGLVKDTKEMEKRTVGLIHEILSLTLWKKASIMKLGHFSREFGLPLKLNALLLKH 304

[Close]

BLAST of Lcy11g016610 vs. ExPASy TrEMBL
Match: A0A5D3DGZ3 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00680 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 2.9e-122
Identity = 233/339 (68.73%), Postives = 252/339 (74.34%), Query Frame = 0


Query: 1   MLKKLRYWNPRLSSPYAFKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILPCP 60
           +L+K RYW+P LSSP   KY LRNFSLWSMKKDPDLESALSRNRRWI NNQIKNIIL CP
Sbjct: 5   VLQKSRYWDPGLSSPCPLKYVLRNFSLWSMKKDPDLESALSRNRRWIANNQIKNIILRCP 64

Query: 61  NQTAPVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYLHDDEYYFRLTKRMMALVEEEETV 120
           +Q APVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYL++DE+YFRLTKRMMALVEEEE V
Sbjct: 65  DQAAPVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYLNNDEHYFRLTKRMMALVEEEEVV 124

Query: 121 KDMQEPIFVERLAKLLMMASNQRLNVVKL------------------------------- 180
           KDMQEP  V+RL KLLMMASNQRLNV+KL                               
Sbjct: 125 KDMQEPAIVKRLTKLLMMASNQRLNVLKLSELRRNFGLPDDFLIRIIPKHSDIFRIVNYT 184

Query: 181 ---------------------------------AFSCSLPTTWVNSWERFHELNASP--- 240
                                            AFSCSLPTTWVNSWE+F+E NASP   
Sbjct: 185 GKKNSMEIELISWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEKFNEFNASPYVS 244

Query: 241 PYVNPRGLVQGTKEREKRTVGLIHEILSLTLWEKASIMKLGHFSREFGLPAKLNTLLLKH 273
           PYVNP GLVQGT+E EKRTVGLIHEILSLTLW+KASI+KLGHFS+EFGLP KLN LLLKH
Sbjct: 245 PYVNPAGLVQGTREMEKRTVGLIHEILSLTLWKKASIIKLGHFSKEFGLPLKLNALLLKH 304

[Close]

BLAST of Lcy11g016610 vs. ExPASy TrEMBL
Match: A0A1S4DTX7 (LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103485622 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 2.9e-122
Identity = 233/339 (68.73%), Postives = 252/339 (74.34%), Query Frame = 0


Query: 1   MLKKLRYWNPRLSSPYAFKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILPCP 60
           +L+K RYW+P LSSP   KY LRNFSLWSMKKDPDLESALSRNRRWI NNQIKNIIL CP
Sbjct: 5   VLQKSRYWDPGLSSPCPLKYVLRNFSLWSMKKDPDLESALSRNRRWIANNQIKNIILRCP 64

Query: 61  NQTAPVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYLHDDEYYFRLTKRMMALVEEEETV 120
           +Q APVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYL++DE+YFRLTKRMMALVEEEE V
Sbjct: 65  DQAAPVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYLNNDEHYFRLTKRMMALVEEEEVV 124

Query: 121 KDMQEPIFVERLAKLLMMASNQRLNVVKL------------------------------- 180
           KDMQEP  V+RL KLLMMASNQRLNV+KL                               
Sbjct: 125 KDMQEPAIVKRLTKLLMMASNQRLNVLKLSELRRNFGLPDDFLIRIIPKHSDIFRIVNYT 184

Query: 181 ---------------------------------AFSCSLPTTWVNSWERFHELNASP--- 240
                                            AFSCSLPTTWVNSWE+F+E NASP   
Sbjct: 185 GKKNSMEIELISWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEKFNEFNASPYVS 244

Query: 241 PYVNPRGLVQGTKEREKRTVGLIHEILSLTLWEKASIMKLGHFSREFGLPAKLNTLLLKH 273
           PYVNP GLVQGT+E EKRTVGLIHEILSLTLW+KASI+KLGHFS+EFGLP KLN LLLKH
Sbjct: 245 PYVNPAGLVQGTREMEKRTVGLIHEILSLTLWKKASIIKLGHFSKEFGLPLKLNALLLKH 304

[Close]

BLAST of Lcy11g016610 vs. ExPASy TrEMBL
Match: A0A0A0KEF0 (PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G057120 PE=4 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 3.7e-122
Identity = 233/339 (68.73%), Postives = 251/339 (74.04%), Query Frame = 0


Query: 1   MLKKLRYWNPRLSSPYAFKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILPCP 60
           +L+K RYW+P LSSP   KY LRNFSLWSMKKDPDLESALSRNRRWI NNQIKNIIL CP
Sbjct: 5   VLQKSRYWDPGLSSPCPLKYILRNFSLWSMKKDPDLESALSRNRRWIANNQIKNIILRCP 64

Query: 61  NQTAPVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYLHDDEYYFRLTKRMMALVEEEETV 120
           +Q APVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYL +DE+YFRLTKRMMALVEEEE V
Sbjct: 65  DQAAPVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYLDNDEHYFRLTKRMMALVEEEEVV 124

Query: 121 KDMQEPIFVERLAKLLMMASNQRLNVVKL------------------------------- 180
           KDMQEP  V+RL KLLMMASNQRLNVVKL                               
Sbjct: 125 KDMQEPAIVKRLTKLLMMASNQRLNVVKLSELRRNFGLPDDFLIRIIPKHSDIFRIVNYT 184

Query: 181 ---------------------------------AFSCSLPTTWVNSWERFHELNASP--- 240
                                            AFSCSLPTTWVNSWE+F+E NASP   
Sbjct: 185 GKKNSMEIELISWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEKFNEFNASPYVS 244

Query: 241 PYVNPRGLVQGTKEREKRTVGLIHEILSLTLWEKASIMKLGHFSREFGLPAKLNTLLLKH 273
           PYVNP GLVQGT+E EKRTVGLIHEILSLTLW+KASI+KLGHF++EFGLP KLN LLLKH
Sbjct: 245 PYVNPAGLVQGTREMEKRTVGLIHEILSLTLWKKASIIKLGHFTKEFGLPLKLNALLLKH 304

[Close]

BLAST of Lcy11g016610 vs. NCBI nr
Match: XP_038886354.1 (protein WHAT'S THIS FACTOR 1 homolog, chloroplastic [Benincasa hispida] >XP_038886355.1 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic [Benincasa hispida] >XP_038886356.1 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic [Benincasa hispida] >XP_038886357.1 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic [Benincasa hispida])

HSP 1 Score: 462.2 bits (1188), Expect = 3.9e-126
Identity = 239/339 (70.50%), Postives = 253/339 (74.63%), Query Frame = 0


Query: 1   MLKKLRYWNPRLSSPYAFKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILPCP 60
           +L+KLRYW+PR SSPY  KYFLRNFSLWSMKKDPDLESALSRNRRWI NNQIKNIIL CP
Sbjct: 5   VLQKLRYWDPRFSSPYVLKYFLRNFSLWSMKKDPDLESALSRNRRWIANNQIKNIILRCP 64

Query: 61  NQTAPVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYLHDDEYYFRLTKRMMALVEEEETV 120
           +Q  PVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYLH+DE YFRLTKRMMALVEEEE V
Sbjct: 65  DQATPVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYLHNDERYFRLTKRMMALVEEEEAV 124

Query: 121 KDMQEPIFVERLAKLLMMASNQRLNVVKL------------------------------- 180
           KDMQEP+ V+RLAKLLMMASNQRLNVVKL                               
Sbjct: 125 KDMQEPVVVKRLAKLLMMASNQRLNVVKLGELKQNFGLSDDYLIRIVPKYSDMFRIVNYT 184

Query: 181 ---------------------------------AFSCSLPTTWVNSWERFHELNASP--- 240
                                            AFSCSLPTTWVNSWE+FHE NASP   
Sbjct: 185 GKKNSMEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTWVNSWEKFHEFNASPYVS 244

Query: 241 PYVNPRGLVQGTKEREKRTVGLIHEILSLTLWEKASIMKLGHFSREFGLPAKLNTLLLKH 273
           PY NP GLVQGTKE EKR VGLIHEILSLTLW+KASI+KLGHFSREFGLP KLN LLLKH
Sbjct: 245 PYENPAGLVQGTKEMEKRIVGLIHEILSLTLWKKASIIKLGHFSREFGLPLKLNALLLKH 304

[Close]

BLAST of Lcy11g016610 vs. NCBI nr
Match: KAG6578890.1 (Protein WHAT'S THIS FACTOR 1-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 461.8 bits (1187), Expect = 5.1e-126
Identity = 240/339 (70.80%), Postives = 255/339 (75.22%), Query Frame = 0


Query: 1   MLKKLRYWNPRLSSPYAFKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILPCP 60
           +L+K R+W+PRLSSPY+ K FLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNI+L CP
Sbjct: 5   VLQKSRHWDPRLSSPYSLKCFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIVLRCP 64

Query: 61  NQTAPVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYLHDDEYYFRLTKRMMALVEEEETV 120
           NQTAPVKFLQKKFKTLD QGKALNWLKKYP CFEVYLH+DEYYFRLTKRMMALVEEEET+
Sbjct: 65  NQTAPVKFLQKKFKTLDCQGKALNWLKKYPICFEVYLHNDEYYFRLTKRMMALVEEEETI 124

Query: 121 KDMQEPIFVERLAKLLMMASNQRLNVVKL------------------------------- 180
           KDMQEP FVERLAKLLMMASNQRLNV+KL                               
Sbjct: 125 KDMQEPAFVERLAKLLMMASNQRLNVLKLGELKRIFGLPDDYLIRIVPKHSDMFRIVNYT 184

Query: 181 ---------------------------------AFSCSLPTTWVNSWERFHELNASP--- 240
                                            AFSCSLPTTWVNSWE+FHE NASP   
Sbjct: 185 GKRNSMEIELVSWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEKFHEFNASPYIS 244

Query: 241 PYVNPRGLVQGTKEREKRTVGLIHEILSLTLWEKASIMKLGHFSREFGLPAKLNTLLLKH 273
           PY N  GLV+ TKE EKRTVGLIHEILSLTLW+KASIMKLGHFSREFGLP KLN LLLKH
Sbjct: 245 PYANHAGLVKDTKEMEKRTVGLIHEILSLTLWKKASIMKLGHFSREFGLPLKLNALLLKH 304

[Close]

BLAST of Lcy11g016610 vs. NCBI nr
Match: XP_022939501.1 (protein WHAT'S THIS FACTOR 1 homolog [Cucurbita moschata])

HSP 1 Score: 461.1 bits (1185), Expect = 8.8e-126
Identity = 240/339 (70.80%), Postives = 254/339 (74.93%), Query Frame = 0


Query: 1   MLKKLRYWNPRLSSPYAFKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILPCP 60
           +L K R+W+PRLSSPY+ K FLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNI+L CP
Sbjct: 5   VLMKSRHWDPRLSSPYSLKCFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIVLRCP 64

Query: 61  NQTAPVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYLHDDEYYFRLTKRMMALVEEEETV 120
           NQTAPVKFLQKKFKTLD QGKALNWLKKYP CFEVYLH+DEYYFRLTKRMMALVEEEET+
Sbjct: 65  NQTAPVKFLQKKFKTLDCQGKALNWLKKYPICFEVYLHNDEYYFRLTKRMMALVEEEETI 124

Query: 121 KDMQEPIFVERLAKLLMMASNQRLNVVKL------------------------------- 180
           KDMQEP FVERLAKLLMMASNQRLNV+KL                               
Sbjct: 125 KDMQEPAFVERLAKLLMMASNQRLNVLKLGELKRIFGLPDDYLIRIVPKHSDMFRIVNYT 184

Query: 181 ---------------------------------AFSCSLPTTWVNSWERFHELNASP--- 240
                                            AFSCSLPTTWVNSWE+FHE NASP   
Sbjct: 185 GKRNSMEIELVSWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEKFHEFNASPYIS 244

Query: 241 PYVNPRGLVQGTKEREKRTVGLIHEILSLTLWEKASIMKLGHFSREFGLPAKLNTLLLKH 273
           PY N  GLV+ TKE EKRTVGLIHEILSLTLW+KASIMKLGHFSREFGLP KLN LLLKH
Sbjct: 245 PYANHAGLVKDTKEMEKRTVGLIHEILSLTLWKKASIMKLGHFSREFGLPLKLNALLLKH 304

[Close]

BLAST of Lcy11g016610 vs. NCBI nr
Match: KAG7016419.1 (Vacuolar iron transporter-like 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 460.3 bits (1183), Expect = 1.5e-125
Identity = 239/339 (70.50%), Postives = 254/339 (74.93%), Query Frame = 0


Query: 1   MLKKLRYWNPRLSSPYAFKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILPCP 60
           + +K R+W+PRLSSPY+ K FLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNI+L CP
Sbjct: 254 LTQKSRHWDPRLSSPYSLKCFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIVLRCP 313

Query: 61  NQTAPVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYLHDDEYYFRLTKRMMALVEEEETV 120
           NQTAPVKFLQKKFKTLD QGKALNWLKKYP CFEVYLH+DEYYFRLTKRMMALVEEEET+
Sbjct: 314 NQTAPVKFLQKKFKTLDCQGKALNWLKKYPICFEVYLHNDEYYFRLTKRMMALVEEEETI 373

Query: 121 KDMQEPIFVERLAKLLMMASNQRLNVVKL------------------------------- 180
           KDMQEP FVERLAKLLMMASNQRLNV+KL                               
Sbjct: 374 KDMQEPAFVERLAKLLMMASNQRLNVLKLGELKRIFGLPDDYLIRIVPKHSDMFRIVNYT 433

Query: 181 ---------------------------------AFSCSLPTTWVNSWERFHELNASP--- 240
                                            AFSCSLPTTWVNSWE+FHE NASP   
Sbjct: 434 GKRNSMEIELVSWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEKFHEFNASPYIS 493

Query: 241 PYVNPRGLVQGTKEREKRTVGLIHEILSLTLWEKASIMKLGHFSREFGLPAKLNTLLLKH 273
           PY N  GLV+ TKE EKRTVGLIHEILSLTLW+KASIMKLGHFSREFGLP KLN LLLKH
Sbjct: 494 PYANHAGLVKDTKEMEKRTVGLIHEILSLTLWKKASIMKLGHFSREFGLPLKLNALLLKH 553

[Close]

BLAST of Lcy11g016610 vs. NCBI nr
Match: XP_022993888.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita maxima] >XP_022993889.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita maxima])

HSP 1 Score: 459.5 bits (1181), Expect = 2.6e-125
Identity = 240/339 (70.80%), Postives = 254/339 (74.93%), Query Frame = 0


Query: 1   MLKKLRYWNPRLSSPYAFKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILPCP 60
           +L+K R+W+PRLSSPY+ K FLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNI+L CP
Sbjct: 5   VLQKSRHWDPRLSSPYSLKCFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIVLRCP 64

Query: 61  NQTAPVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYLHDDEYYFRLTKRMMALVEEEETV 120
           NQTAPVKFLQKKFKTLD QGKALNWLKKYP CFEVYLHDDEYYFRLTKRMMALVEEEETV
Sbjct: 65  NQTAPVKFLQKKFKTLDCQGKALNWLKKYPICFEVYLHDDEYYFRLTKRMMALVEEEETV 124

Query: 121 KDMQEPIFVERLAKLLMMASNQRLNVVKL------------------------------- 180
           KDMQEP FVERLAKLLMMASNQRLNV+KL                               
Sbjct: 125 KDMQEPAFVERLAKLLMMASNQRLNVLKLGELRRNFGLPDDYLIRIVPKHSDMFRIVNYT 184

Query: 181 ---------------------------------AFSCSLPTTWVNSWERFHELNASP--- 240
                                            AFSCSLPTTWVNSWE+FHE NASP   
Sbjct: 185 GKRNSMEIELVSWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEKFHEFNASPYIS 244

Query: 241 PYVNPRGLVQGTKEREKRTVGLIHEILSLTLWEKASIMKLGHFSREFGLPAKLNTLLLKH 273
           PY    GLV+ TKE EKRTVGLIHEILSLTLW+KASIMKLGHFSREFGLP KLN LLLKH
Sbjct: 245 PYAIHAGLVKDTKEMEKRTVGLIHEILSLTLWKKASIMKLGHFSREFGLPLKLNALLLKH 304

[Close]

BLAST of Lcy11g016610 vs. TAIR 10
Match: AT2G31290.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 366.7 bits (940), Expect = 2.1e-101
Identity = 193/328 (58.84%), Postives = 220/328 (67.07%), Query Frame = 0


Query: 12  LSSPYAFKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILPCPNQTAPVKFLQK 71
           L + YA    +R FSLWS KKDPDLESALSRN+RWIVN+++KNIIL CPNQ A +KFLQK
Sbjct: 11  LGTKYA-PLLIRRFSLWSTKKDPDLESALSRNKRWIVNSRLKNIILRCPNQVASIKFLQK 70

Query: 72  KFKTLDLQGKALNWLKKYPCCFEVYLHDDEYYFRLTKRMMALVEEEETVKDMQEPIFVER 131
           KFKTLDLQGKALNWLKKYPCCF VYL +DEYY RLTK MM LVEEEE VKD QEP+  +R
Sbjct: 71  KFKTLDLQGKALNWLKKYPCCFHVYLENDEYYCRLTKPMMTLVEEEELVKDTQEPVLADR 130

Query: 132 LAKLLMMASNQRLNVVKL------------------------------------------ 191
           LAKLLM++ NQRLNVVKL                                          
Sbjct: 131 LAKLLMLSVNQRLNVVKLNEFKRSFGFPDDYVIRIVPKYSDVFRLVNYSGRKSSMEIELL 190

Query: 192 ----------------------AFSCSLPTTWVNSWERFHELNASP---PYVNPRGLVQG 251
                                 +FSCSLP+TW   WERF E NA P   PY +   LV+G
Sbjct: 191 LWKPELAVSAVEAAAKKCGSEPSFSCSLPSTWTKPWERFMEFNAFPYISPYEDHGDLVEG 250

Query: 252 TKEREKRTVGLIHEILSLTLWEKASIMKLGHFSREFGLPAKLNTLLLKHPGIFYVSNKYQ 273
           +KE EKR+VGL+HE+LSLTLW+K SI+KL HF REFGLP KLN +LLKHPGIFYV NKYQ
Sbjct: 251 SKESEKRSVGLVHELLSLTLWKKLSIVKLSHFKREFGLPEKLNGMLLKHPGIFYVGNKYQ 310

[Close]

BLAST of Lcy11g016610 vs. TAIR 10
Match: AT2G31290.2 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 366.7 bits (940), Expect = 2.1e-101
Identity = 193/328 (58.84%), Postives = 220/328 (67.07%), Query Frame = 0


Query: 12  LSSPYAFKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILPCPNQTAPVKFLQK 71
           L + YA    +R FSLWS KKDPDLESALSRN+RWIVN+++KNIIL CPNQ A +KFLQK
Sbjct: 11  LGTKYA-PLLIRRFSLWSTKKDPDLESALSRNKRWIVNSRLKNIILRCPNQVASIKFLQK 70

Query: 72  KFKTLDLQGKALNWLKKYPCCFEVYLHDDEYYFRLTKRMMALVEEEETVKDMQEPIFVER 131
           KFKTLDLQGKALNWLKKYPCCF VYL +DEYY RLTK MM LVEEEE VKD QEP+  +R
Sbjct: 71  KFKTLDLQGKALNWLKKYPCCFHVYLENDEYYCRLTKPMMTLVEEEELVKDTQEPVLADR 130

Query: 132 LAKLLMMASNQRLNVVKL------------------------------------------ 191
           LAKLLM++ NQRLNVVKL                                          
Sbjct: 131 LAKLLMLSVNQRLNVVKLNEFKRSFGFPDDYVIRIVPKYSDVFRLVNYSGRKSSMEIELL 190

Query: 192 ----------------------AFSCSLPTTWVNSWERFHELNASP---PYVNPRGLVQG 251
                                 +FSCSLP+TW   WERF E NA P   PY +   LV+G
Sbjct: 191 LWKPELAVSAVEAAAKKCGSEPSFSCSLPSTWTKPWERFMEFNAFPYISPYEDHGDLVEG 250

Query: 252 TKEREKRTVGLIHEILSLTLWEKASIMKLGHFSREFGLPAKLNTLLLKHPGIFYVSNKYQ 273
           +KE EKR+VGL+HE+LSLTLW+K SI+KL HF REFGLP KLN +LLKHPGIFYV NKYQ
Sbjct: 251 SKESEKRSVGLVHELLSLTLWKKLSIVKLSHFKREFGLPEKLNGMLLKHPGIFYVGNKYQ 310

[Close]

BLAST of Lcy11g016610 vs. TAIR 10
Match: AT3G63090.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 122.1 bits (305), Expect = 9.0e-28
Identity = 86/323 (26.63%), Postives = 147/323 (45.51%), Query Frame = 0


Query: 31  KKDPDLESALSRNRRWIVNNQIKNIILPCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYP 90
           KKD  L+ A+ +++R+ +  ++   +L  P Q  P+++L+K+ + L L  KA ++++  P
Sbjct: 39  KKDTRLDEAIEQDKRYKLCARVVKEVLNEPGQVIPLRYLEKRRERLRLTFKAKSFVEMNP 98

Query: 91  CCFEVYL------HDDEYYFRLTKRMMALVEEEETVKDMQEPIFVERLAKLLMMASNQRL 150
             FE+Y        D   + R T R+ A ++EE+ +    EP+ V +L +LLMMA ++ +
Sbjct: 99  SLFEIYYDRIKPKSDPVQFLRPTPRLRAFLDEEQRIYSENEPLLVSKLCQLLMMAKDKVI 158

Query: 151 NVVKLA------------------------------------------------------ 210
           +  KL                                                       
Sbjct: 159 SADKLVHVKRDFGFPNDFLMKLVQKYPNYFRLTGLPEEGKSFLELVSWNPDFAKSKIELR 218

Query: 211 ---------------FSCSLPTTW-----VNSWER-FHELNASPPYVNPRGLVQGTKERE 270
                          ++  LP+ +     +  W R + E +   PY +   L Q +KE E
Sbjct: 219 AEDETLKTGVRIRPNYNVKLPSGFFLRKEMREWTRDWLEQDYISPYEDVSHLDQASKEME 278

Query: 271 KRTVGLIHEILSLTLWEKASIMKLGHFSREFGLPAKLNTLLLKHPGIFYVSNKYQIYTVL 273
           KRTVG++HE+LSL+L ++  +  LG F  EF      +++  +H GIFY+S K  I T +
Sbjct: 279 KRTVGVVHELLSLSLLKRVPVPTLGKFCDEFRFSNAFSSVFTRHSGIFYLSLKGGIKTAV 338

[Close]

BLAST of Lcy11g016610 vs. TAIR 10
Match: AT5G21970.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 102.1 bits (253), Expect = 9.6e-22
Identity = 67/203 (33.00%), Postives = 102/203 (50.25%), Query Frame = 0


Query: 83  LNWLKKYPCCFEVY-LHDDEYYFRLT--KRMMALVEEEETVKDMQEPIFVERLAKLLMMA 142
           +NW+  +P  F+V  L D E Y  L       A+ E E+    + E              
Sbjct: 192 INWVYNFPQHFKVVKLGDGEEYLELVSWNPAWAITELEKKTLGITED------------- 251

Query: 143 SNQRLNVVKLAFSCSLPTTWVNSW------ERFHELNASPPYVNPRGLVQGTKEREKRTV 202
              +  ++ LAF    P ++   +      E F + +   PY + RGL  G+KE +KR +
Sbjct: 252 CEHKPGMLSLAFPMKFPPSYKKMYRYRGKIEHFQKRSYLSPYADARGLEAGSKEFDKRAI 311

Query: 203 GLIHEILSLTLWEKASIMKLGHFSREFGLPAKLNTLLLKHPGIFYVSNKYQIYTVLLREG 262
            ++HE+LS TL ++     L HF REF +P KL  + LKH GIFYVS + + ++V L EG
Sbjct: 312 AVMHELLSFTLEKRLVTDHLTHFRREFVMPQKLMRIFLKHCGIFYVSERGKRFSVFLTEG 371

Query: 263 YNGSVLIDKDSLVVVKDKYQIYT 277
           Y G  LI+K  L++ K+K   +T
Sbjct: 372 YEGPELIEKCPLILWKEKLLKFT 381

[Close]

BLAST of Lcy11g016610 vs. TAIR 10
Match: AT4G01037.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 94.0 bits (232), Expect = 2.6e-19
Identity = 51/129 (39.53%), Postives = 73/129 (56.59%), Query Frame = 0


Query: 143 RLNVVKLAFSCSLPTTWVNSWERFHELNASPPYVNPRGLVQGTKEREKRTVGLIHEILSL 202
           + N VKL    +L  +      +F ++    PY +   L  GT E+EK   G+IHE+LSL
Sbjct: 274 KFNRVKLPRGLNLSKSETRKISQFRDMQYISPYKDFSHLRSGTLEKEKHACGVIHELLSL 333

Query: 203 TLWEKASIMKLGHFSREFGLPAKLNTLLLKHPGIFYVSNKYQIYTVLLREGYNGSVLIDK 262
           T  ++  +  L HF  EF    +L  +L++HP +FYVS K +  +V LRE Y  S LIDK
Sbjct: 334 TTEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDLFYVSLKGERDSVFLREAYRNSELIDK 393

Query: 263 DSLVVVKDK 272
           D L +VK+K
Sbjct: 394 DPLTLVKEK 402

The following BLAST results are available for this feature:

BLAST of Lcy11g016610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0MFS5	3.7e-18	39.53	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q65XL5	1.8e-17	24.92	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japon...	[more]
B6TTV8	2.0e-16	33.33	Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=...	[more]
Q689D6	2.0e-11	41.67	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1...	[more]
Q9ZUZ6	1.4e-09	34.58	Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=W...	[more]

BLAST of Lcy11g016610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FG34	4.3e-126	70.80	protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114453...	[more]
A0A6J1K3L2	1.2e-125	70.80	protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita maxima OX=3661 GN=LOC111489755 ...	[more]
A0A5D3DGZ3	2.9e-122	68.73	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S4DTX7	2.9e-122	68.73	LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656...	[more]
A0A0A0KEF0	3.7e-122	68.73	PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G057120 PE=4 S...	[more]

BLAST of Lcy11g016610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886354.1	3.9e-126	70.50	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic [Benincasa hispida] >XP_0388...	[more]
KAG6578890.1	5.1e-126	70.80	Protein WHAT'S THIS FACTOR 1-like, chloroplastic, partial [Cucurbita argyrosperm...	[more]
XP_022939501.1	8.8e-126	70.80	protein WHAT'S THIS FACTOR 1 homolog [Cucurbita moschata]	[more]
KAG7016419.1	1.5e-125	70.50	Vacuolar iron transporter-like 4, partial [Cucurbita argyrosperma subsp. argyros...	[more]
XP_022993888.1	2.6e-125	70.80	protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita maxima] >XP_022993889.1 protein R...	[more]

BLAST of Lcy11g016610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31290.1	2.1e-101	58.84	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT2G31290.2	2.1e-101	58.84	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT3G63090.1	9.0e-28	26.63	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT5G21970.1	9.6e-22	33.00	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT4G01037.1	2.6e-19	39.53	Ubiquitin carboxyl-terminal hydrolase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 160..273 e-value: 2.7E-39 score: 135.0 coord: 31..150 e-value: 3.5E-32 score: 111.7
IPR045040	PORR family	PANTHER	PTHR31476	PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC	coord: 16..150 coord: 150..273
None	No IPR available	PANTHER	PTHR31476:SF5	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN	coord: 16..150 coord: 150..273

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g016610.1	Lcy11g016610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding