Lcy11g016420 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g016420
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ty3-gypsy retrotransposon protein
Location	Chr11: 39767984 .. 39770890 (+)
RNA-Seq Expression	Lcy11g016420
Synteny	Lcy11g016420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGGAAAATGCTGGTACTAAAAGAGACCTACTGGTCGAGCAGTTCGTACGAACACTGAAGGAAAATGCTTTCGACTGGTATACCGACCTTGAGCCTGAGACTATTGATAGTTGGGAACAACTTGAGAAGGAGTTCCTCAATCGCTTCTACAGCACAAGACGAACCGTCAGTATAACTGAGCTAACCAATGCTAAACAACGAAAAGGTGAGCCGGTTGTTGACTACATCAACTGTTTGAGAGCTTTGAGCCTAGATTGCAAAGACCGACTCTGTAACACCCACTTTTCGAAATCAAACCATTTTGGGAATTATTAAGCGTTCTTATTCTAATTTAGATAATTAGAATTTAAGCTTAGTCTTGGTCGTTAAATTAAATTTCTATAATTTAGGGAAAAGAGATTTTTAATTAATTCATTGATTTCCTAAAGTTTGGAAGTTTAATATTCGATATTTATCTAAAATTTCAAAAGACTGAATCCCAAATCAATTGAGTTATTTTCTTTCCCAAATCTTTTAGGAGTTAAGTTTGAGTTTTTAAGATAAAATCCTAGATAAGACCTAATTCCTAATTAAATTGGGTTTTTCTTCTTAGGGTTTATTTAAAGAAAAGAAAAGGAAATAAAGCTAAAAAGAAAAAAAAAACCGCATCTCTATTCTTCCCTATCTCCTCTCGCGTGTATACCCTCCCCTGCCATGAGCTTCAGACGCCGCCCGACCCAACACCGTAACTCTGTTCAGCCGGCACCCAGTCCCTCGTCGGTGATCGAAACGCTGCCACCCCGCCAGCCCTCAACCTCGTTGCCGCCATTCTCCGGTCTCTCCCTCTCTCTCGTTGTGGTGTCGTTTGGCAAGTAGAAGACCGCTGATGACGACTTTTCTTTGCCTCTTTTGCGTGTCATCGACGAGCTGTGAAAGGACCCGCAACTTGATTTTCTTCATCTCCTTCGGTAAGGTTCCTTCTTCCATTGTTTTCATTTGATTCCTGCAAATAGTAGGCTAAATCTCTCTTTCTCGTCTCTCTTTTTCGCCGGCAACAAGGAACCCACGCCGCTACTTTGTTTCTCGCTGCCATTCGCACACCACCGCAAGTCCCTCCCGCGAGCATCTACTGTGCAGCAAGGATTGGTGTGGTTGCAGCTCTCCAACGACGTTATTCGGTGTTTCGGCAAGATTTAGTTTGTACACATGATTATTTGGGCTCAATCGTGGATTAACCATTCAGTTTCAACCCCGTTATTACTCTAAATCAATGTCCGCTGCCTACCGAGTTAGAATTTCATTGACCCATTCGTTATCGAGGATGAGCACAAACTCAGACTCTGCTCCCTTAAACCTGCATAAAATTCACGAACTAGAGGCTCCACGACCTCCTGAGGATGAGCACAAAACTCCGGACACTTGTACTGAGAGATGACCTTCGTCATGAACTCAAACAGGTCACCAGCTCGATCAGAGAATCCTTTCTCATTCAGGAAGTCCCTTTTCTTCATGACTTCCATTCTAGCTTTAAAGTCCACATCCTTGAAGATTTCAGGAAACGAATTCTTAGGCGGTGTGGTGGTTGCTTTGGCGGGTGTGGCGGCGGCTGGAGCGGGAGAGGCATTCATAGACCTAGTCCTCGACCTCTTTGCAAAGATTGGATCATTTTTGTTCTTAATTCTCCGCTCTGCCTTGATTTCTCTTCTTCTCTTTTTCCTCAAGGTTGAAGAAATTGAAATTTTGTTGTCATCCCACTCCACCTCTGAATCTGACTCACTGTCACTTTTACTAGAGGTATTGACCTCATTCTCTTCATCTTTCTTCTCATCTTCTTTCTCTTCTAAAGAAGAACTTCCAGTAGCGGGTGAAATGCCTCTAGTATCATATTCAAATAGAGGATCAAGGGCAAGATCACCCTGCTGGTCATCTAAGGCCACAACTTTGCCTTTTTTTCAGAATGCGATTCAAATGCGGTTGCATTCTACCCATCTTCTTCATCTTCTGTTTTTTCTTCAGCCCTCCAAGGGCCTTTTCTTTCTCTTCTTGCAACTCTTCCCCTTCTCTTGAGTGTTATGTAGGGGCTCAAAGGTTGCAAGGAAATCTTTAGCCTCTTTTCTTCGGATTTCTTAGATAGCTGAAACAATAACAAACTTATCAAAATGTTCACACACTTAAACGTGATTATTTTTGGGTGAAAATTTTCAAGTAAAAACCAAATCTAAAATACCTTAGCCAATTCAATTCCCAGGTAAATCCCCAGGAAAAGGTGTTCCTTACGGTCAACTTAAATACCTTTTCCTAGACAGGATTTTCCTTAGACAGAGTTCCCTCTTGCCCATGTTATTTTGTTTTTTATTTTTAACTTCTAAGAATTTCCTTTCTTTTCTTCTTTTATTTTTCTTTTAAAAACTGAAACATCAACAAACTTATAAGAGTTTTCACACACTTATTCCTTTTGAAAATTTTTCCGAACCAGTTCAAGTTAAAAACCTTAGCTATTTCAATTCTCAAGAGAATCTTCAGGTATTTATCAAAACTCTTAAAAGAAAACAAACTTGAGCATCAACAAACTAGCCGAACGAACTGGCAAGGTAATATACTAAAAACAATATGCTAAGAACAAAACAAGCAATGCTAAGCCTAAATAAAAGAACAATAAATTAATGCATGAAACAAATTACTAAAGATCTAACTAAGCAAATGAAAAATAAAGAAACATGTTGATATTTAATAAGGAAAGCAGTAAAAAGTAAAAGAGAGTGGAAACTTCCCTAGCTCTTGGAAGATTTGTCCTCCAAATCAGAGGTCTCAGGTTCATCCAGAAAGGATGATGGAAATGGAAGGGCAATTGAAGCTTCATCAGATGAGCTGGCCAGGAACATTTGCTTGATAGCCTCATCCTTCTCTCGAGCACAGGTCTAA

mRNA sequence

ATGGGGAAGGAAAATGCTGGTACTAAAAGAGACCTACTGGTCGAGCAGTTCGTACGAACACTGAAGGAAAATGCTTTCGACTGGTATACCGACCTTGAGCCTGAGACTATTGATAGTTGGGAACAACTTGAGAAGGAGTTCCTCAATCGCTTCTACAGCACAAGACGAACCGTCAGTATAACTGAGCTAACCAATGCTAAACAACGAAAAGAGGTCTCAGGTTCATCCAGAAAGGATGATGGAAATGGAAGGGCAATTGAAGCTTCATCAGATGAGCTGGCCAGGAACATTTGCTTGATAGCCTCATCCTTCTCTCGAGCACAGGTCTAA

Coding sequence (CDS)

ATGGGGAAGGAAAATGCTGGTACTAAAAGAGACCTACTGGTCGAGCAGTTCGTACGAACACTGAAGGAAAATGCTTTCGACTGGTATACCGACCTTGAGCCTGAGACTATTGATAGTTGGGAACAACTTGAGAAGGAGTTCCTCAATCGCTTCTACAGCACAAGACGAACCGTCAGTATAACTGAGCTAACCAATGCTAAACAACGAAAAGAGGTCTCAGGTTCATCCAGAAAGGATGATGGAAATGGAAGGGCAATTGAAGCTTCATCAGATGAGCTGGCCAGGAACATTTGCTTGATAGCCTCATCCTTCTCTCGAGCACAGGTCTAA

Protein sequence

MGKENAGTKRDLLVEQFVRTLKENAFDWYTDLEPETIDSWEQLEKEFLNRFYSTRRTVSITELTNAKQRKEVSGSSRKDDGNGRAIEASSDELARNICLIASSFSRAQV

Homology

[Close]

BLAST of Lcy11g016420 vs. ExPASy TrEMBL
Match: A0A6J1DYQ8 (uncharacterized protein LOC111025834 OS=Momordica charantia OX=3673 GN=LOC111025834 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.1e-23
Identity = 56/67 (83.58%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 4   ENAGTKRDLLVEQFVRTLKENAFDWYTDLEPETIDSWEQLEKEFLNRFYSTRRTVSITEL 63
           ENAGT+ D LV+QFVRTLK NAFDWYTDLEPETI+SWEQLEKEFLNRFYST+RTVS+ EL
Sbjct: 63  ENAGTRGDQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEKEFLNRFYSTKRTVSMMEL 122

Query: 64  TNAKQRK 71
           TN++QRK
Sbjct: 123 TNSEQRK 129

[Close]

BLAST of Lcy11g016420 vs. ExPASy TrEMBL
Match: A0A7N2M5H8 (Reverse transcriptase OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 55/68 (80.88%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 4   ENAGTKRDLLVEQFVRTLKENAFDWYTDLEPETIDSWEQLEKEFLNRFYSTRRTVSITEL 63
           ENAGT+R L V+QFVR+LK NAFDWYTDLEPE+IDSWEQLE+EFLNRFYSTRRTVS+ EL
Sbjct: 274 ENAGTQRGLFVKQFVRSLKGNAFDWYTDLEPESIDSWEQLEREFLNRFYSTRRTVSMMEL 333

Query: 64  TNAKQRKE 72
           TN KQ K+
Sbjct: 334 TNTKQWKD 341

[Close]

BLAST of Lcy11g016420 vs. ExPASy TrEMBL
Match: A0A5A7TYI6 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G002490 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.8e-22
Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 4  ENAGTKRDLLVEQFVRTLKENAFDWYTDLEPETIDSWEQLEKEFLNRFYSTRRTVSITEL 63
          ENAG++ D LV QFVR+LK NAF+WYTDLEPE IDSWEQLEKEFLNRFYSTRRTVS+ EL
Sbjct: 31 ENAGSRGDQLVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLEKEFLNRFYSTRRTVSMMEL 90

Query: 64 TNAKQRK 71
          TN KQRK
Sbjct: 91 TNTKQRK 97

[Close]

BLAST of Lcy11g016420 vs. ExPASy TrEMBL
Match: A0A5D3DU00 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00400 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.8e-22
Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 4  ENAGTKRDLLVEQFVRTLKENAFDWYTDLEPETIDSWEQLEKEFLNRFYSTRRTVSITEL 63
          ENAG++ D LV QFVR+LK NAF+WYTDLEPE IDSWEQLEKEFLNRFYSTRRTVS+ EL
Sbjct: 31 ENAGSRGDQLVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLEKEFLNRFYSTRRTVSMMEL 90

Query: 64 TNAKQRK 71
          TN KQRK
Sbjct: 91 TNTKQRK 97

[Close]

BLAST of Lcy11g016420 vs. ExPASy TrEMBL
Match: A0A5A7SKR0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00170 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.9e-22
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 4   ENAGTKRDLLVEQFVRTLKENAFDWYTDLEPETIDSWEQLEKEFLNRFYSTRRTVSITEL 63
           E AGT+ DLLV+QFVRTLK NAFDWYTDLEPE+IDSWEQLE++FLNRFYSTRR VS+ EL
Sbjct: 181 ETAGTRGDLLVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIEL 240

Query: 64  TNAKQRKEV 73
           T  KQRK V
Sbjct: 241 TATKQRKAV 249

[Close]

BLAST of Lcy11g016420 vs. NCBI nr
Match: XP_022159413.1 (uncharacterized protein LOC111025834 [Momordica charantia])

HSP 1 Score: 118.2 bits (295), Expect = 4.3e-23
Identity = 56/67 (83.58%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 4   ENAGTKRDLLVEQFVRTLKENAFDWYTDLEPETIDSWEQLEKEFLNRFYSTRRTVSITEL 63
           ENAGT+ D LV+QFVRTLK NAFDWYTDLEPETI+SWEQLEKEFLNRFYST+RTVS+ EL
Sbjct: 63  ENAGTRGDQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEKEFLNRFYSTKRTVSMMEL 122

Query: 64  TNAKQRK 71
           TN++QRK
Sbjct: 123 TNSEQRK 129

[Close]

BLAST of Lcy11g016420 vs. NCBI nr
Match: TYK27186.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 3.7e-22
Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 4  ENAGTKRDLLVEQFVRTLKENAFDWYTDLEPETIDSWEQLEKEFLNRFYSTRRTVSITEL 63
          ENAG++ D LV QFVR+LK NAF+WYTDLEPE IDSWEQLEKEFLNRFYSTRRTVS+ EL
Sbjct: 31 ENAGSRGDQLVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLEKEFLNRFYSTRRTVSMMEL 90

Query: 64 TNAKQRK 71
          TN KQRK
Sbjct: 91 TNTKQRK 97

[Close]

BLAST of Lcy11g016420 vs. NCBI nr
Match: KAA0048602.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 3.7e-22
Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 4  ENAGTKRDLLVEQFVRTLKENAFDWYTDLEPETIDSWEQLEKEFLNRFYSTRRTVSITEL 63
          ENAG++ D LV QFVR+LK NAF+WYTDLEPE IDSWEQLEKEFLNRFYSTRRTVS+ EL
Sbjct: 31 ENAGSRGDQLVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLEKEFLNRFYSTRRTVSMMEL 90

Query: 64 TNAKQRK 71
          TN KQRK
Sbjct: 91 TNTKQRK 97

[Close]

BLAST of Lcy11g016420 vs. NCBI nr
Match: XP_031742390.1 (uncharacterized protein LOC116401672 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-22
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 4  ENAGTKRDLLVEQFVRTLKENAFDWYTDLEPETIDSWEQLEKEFLNRFYSTRRTVSITEL 63
          ENAG++ D LV QFVR+LK NAF+WYTDLEPE+I+SWEQLEKEFLNRFYSTRRTVS+ EL
Sbjct: 31 ENAGSRGDQLVRQFVRSLKGNAFEWYTDLEPESIESWEQLEKEFLNRFYSTRRTVSMMEL 90

Query: 64 TNAKQRK 71
          TN KQRK
Sbjct: 91 TNTKQRK 97

[Close]

BLAST of Lcy11g016420 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-22
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 4   ENAGTKRDLLVEQFVRTLKENAFDWYTDLEPETIDSWEQLEKEFLNRFYSTRRTVSITEL 63
           ENAG++ D LV QFVR+LK NAF+WYTDLEPE+I+SWEQLEKEFLNRFYSTRRTVS+ EL
Sbjct: 232 ENAGSRGDQLVRQFVRSLKGNAFEWYTDLEPESIESWEQLEKEFLNRFYSTRRTVSMMEL 291

Query: 64  TNAKQRK 71
           TN KQRK
Sbjct: 292 TNTKQRK 298

The following BLAST results are available for this feature:

BLAST of Lcy11g016420 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g016420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DYQ8	2.1e-23	83.58	uncharacterized protein LOC111025834 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A7N2M5H8	1.4e-22	80.88	Reverse transcriptase OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A5A7TYI6	1.8e-22	82.09	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3DU00	1.8e-22	82.09	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7SKR0	3.9e-22	79.71	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Lcy11g016420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159413.1	4.3e-23	83.58	uncharacterized protein LOC111025834 [Momordica charantia]	[more]
TYK27186.1	3.7e-22	82.09	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0048602.1	3.7e-22	82.09	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
XP_031742390.1	8.1e-22	80.60	uncharacterized protein LOC116401672 [Cucumis sativus]	[more]
XP_031739134.1	8.1e-22	80.60	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]

BLAST of Lcy11g016420 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 17..70 e-value: 7.1E-7 score: 29.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g016420.1	Lcy11g016420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity