Lcy11g016340 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g016340
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DBD_Tnp_Mut domain-containing protein
Location	Chr11: 39562816 .. 39563205 (+)
RNA-Seq Expression	Lcy11g016340
Synteny	Lcy11g016340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGGACATGTTGTGGTTCATGTCGAGCATTGGCGGATGAATGTCCAGTGATATGTGTGTTGTTGTCGATCACGCTGAAAGGGATGCAGCCCCTGGGAGTTCACAGTGCTCCATGGTGGGGAATTCGGGGTCTACATTGCAGCATGAAGTTAGCAAAAAAAAACTACAAAATTGTTGATTTTATCGACGTTGACTCCACGACTTCATCTGTACCGGTTGGTGAAGATTCGATCTTTCAAAGCAAGGACGAGTTGAAAAAAGCAATATACTTACTTGCTATAAAAAACAGTTTCCAACTACGGACTATCAAATCGAATCAGAAATCGTTTGTGGTTGGGTGCAAGGACATGGCATGTTGTTGGTACATTCGGTCGTCTGGTATTTAG

mRNA sequence

ATGACAGGGACATGTTGTGGTTCATGTCGAGCATTGGCGGATGAATGTCCAGTGATATGTGTGTTGTTGTCGATCACGCTGAAAGGGATGCAGCCCCTGGGAGTTCACAGTGCTCCATGGTGGGGAATTCGGGGTCTACATTGCAGCATGAAGTTAGCAAAAAAAAACTACAAAATTGTTGATTTTATCGACGTTGACTCCACGACTTCATCTGTACCGGTTGGTGAAGATTCGATCTTTCAAAGCAAGGACGAGTTGAAAAAAGCAATATACTTACTTGCTATAAAAAACAGTTTCCAACTACGGACTATCAAATCGAATCAGAAATCGTTTGTGGTTGGGTGCAAGGACATGGCATGTTGTTGGTACATTCGGTCGTCTGGTATTTAG

Coding sequence (CDS)

ATGACAGGGACATGTTGTGGTTCATGTCGAGCATTGGCGGATGAATGTCCAGTGATATGTGTGTTGTTGTCGATCACGCTGAAAGGGATGCAGCCCCTGGGAGTTCACAGTGCTCCATGGTGGGGAATTCGGGGTCTACATTGCAGCATGAAGTTAGCAAAAAAAAACTACAAAATTGTTGATTTTATCGACGTTGACTCCACGACTTCATCTGTACCGGTTGGTGAAGATTCGATCTTTCAAAGCAAGGACGAGTTGAAAAAAGCAATATACTTACTTGCTATAAAAAACAGTTTCCAACTACGGACTATCAAATCGAATCAGAAATCGTTTGTGGTTGGGTGCAAGGACATGGCATGTTGTTGGTACATTCGGTCGTCTGGTATTTAG

Protein sequence

MTGTCCGSCRALADECPVICVLLSITLKGMQPLGVHSAPWWGIRGLHCSMKLAKKNYKIVDFIDVDSTTSSVPVGEDSIFQSKDELKKAIYLLAIKNSFQLRTIKSNQKSFVVGCKDMACCWYIRSSGI

Homology

[Close]

BLAST of Lcy11g016340 vs. ExPASy TrEMBL
Match: A0A5D3CE11 (DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00490 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.0e-08
Identity = 31/69 (44.93%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 59  IVDFIDVDSTTSSVPVGEDSIFQSKDELKKAIYLLAIKNSFQLRTIKSNQKSFVVGCKDM 118
           I+D    +S+ + + +   S+F+ K  LKKAIY+LA+ NSF+L T++SN  SF + CKD 
Sbjct: 46  IIDLNAFESSHTGISIRVGSMFRQKSVLKKAIYMLALNNSFELVTVRSNGTSFDIKCKDP 105

Query: 119 ACCWYIRSS 128
           +C WY+R+S
Sbjct: 106 SCTWYLRAS 114

[Close]

BLAST of Lcy11g016340 vs. ExPASy TrEMBL
Match: A0A5A7VNV1 (Protein FAR1-RELATED SEQUENCE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001170 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 31/69 (44.93%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 59  IVDFIDVDSTTSSVPVGEDSIFQSKDELKKAIYLLAIKNSFQLRTIKSNQKSFVVGCKDM 118
           I+D    +S+   +P+   S+F+ K  LKKAIY+LA+ +SF+L T++SN+ SF + CKD 
Sbjct: 73  IIDLNAFESSHIDIPIRVGSMFRQKSVLKKAIYMLALNSSFELVTVRSNRTSFDIICKDP 132

Query: 119 ACCWYIRSS 128
           +C WY+R+S
Sbjct: 133 SCPWYLRAS 141

[Close]

BLAST of Lcy11g016340 vs. ExPASy TrEMBL
Match: A0A5D3CIA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00820 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 31/69 (44.93%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 59  IVDFIDVDSTTSSVPVGEDSIFQSKDELKKAIYLLAIKNSFQLRTIKSNQKSFVVGCKDM 118
           I+D    +S+   +P+   S+F+ K  LKKAIY+LA+ +SF+L T++SN+ SF + CKD 
Sbjct: 73  IIDLNAFESSHIDIPIRVGSMFRQKSVLKKAIYMLALNSSFELVTVRSNRTSFDIICKDP 132

Query: 119 ACCWYIRSS 128
           +C WY+R+S
Sbjct: 133 SCPWYLRAS 141

[Close]

BLAST of Lcy11g016340 vs. ExPASy TrEMBL
Match: A0A1S4E0D5 (uncharacterized protein LOC107991253 OS=Cucumis melo OX=3656 GN=LOC107991253 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-08
Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 59  IVDFIDVDSTTSSVPVGEDSIFQSKDELKKAIYLLAIKNSFQLRTIKSNQKSFVVGCKDM 118
           I+DF   +S  + + +   S+F+ K  LKKAIY+LA+ +SF+L T++SN+ SF + CKD 
Sbjct: 46  IIDFNAFESPNTVIHIRVGSMFRQKLVLKKAIYMLALNSSFELVTVRSNRTSFDIRCKDP 105

Query: 119 ACCWYIRSS 128
           AC WY+R+S
Sbjct: 106 ACPWYLRAS 114

[Close]

BLAST of Lcy11g016340 vs. ExPASy TrEMBL
Match: A0A5A7TUB5 (DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002830 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.8e-08
Identity = 29/69 (42.03%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 59  IVDFIDVDSTTSSVPVGEDSIFQSKDELKKAIYLLAIKNSFQLRTIKSNQKSFVVGCKDM 118
           I+D    +S+ + +P+   S+F++K  LKKAIY+  + NSF+L T++SN+  F + CKD 
Sbjct: 37  IIDLDAFESSHTGIPIRVGSMFKNKPVLKKAIYMFIVNNSFKLVTVRSNRTLFDIRCKDS 96

Query: 119 ACCWYIRSS 128
           +C WY+R+S
Sbjct: 97  SCPWYLRAS 105

[Close]

BLAST of Lcy11g016340 vs. NCBI nr
Match: XP_038887125.1 (uncharacterized protein LOC120077310 [Benincasa hispida])

HSP 1 Score: 79.3 bits (194), Expect = 2.6e-11
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 49  SMKLAKKNYKIVDFIDVDSTTSSVPVGEDSIFQSKDELKKAIYLLAIKNSFQLRTIKSNQ 108
           S K    N +IVD  D D   S +P+     F SK  LKKAIY LA+KNSF+L T +SN+
Sbjct: 124 SFKHPAGNNEIVDSQDFDVFQSGIPIRVGLPFSSKSVLKKAIYFLALKNSFELTTTRSNK 183

Query: 109 KSFVVGCKDMACCWYIRSS 128
            SF + CKDM+C WY+R+S
Sbjct: 184 TSFEIHCKDMSCGWYLRAS 202

[Close]

BLAST of Lcy11g016340 vs. NCBI nr
Match: TYK09765.1 (uncharacterized protein E5676_scaffold127G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-08
Identity = 31/69 (44.93%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 59  IVDFIDVDSTTSSVPVGEDSIFQSKDELKKAIYLLAIKNSFQLRTIKSNQKSFVVGCKDM 118
           I+D    +S+ + + +   S+F+ K  LKKAIY+LA+ NSF+L T++SN  SF + CKD 
Sbjct: 46  IIDLNAFESSHTGISIRVGSMFRQKSVLKKAIYMLALNNSFELVTVRSNGTSFDIKCKDP 105

Query: 119 ACCWYIRSS 128
           +C WY+R+S
Sbjct: 106 SCTWYLRAS 114

[Close]

BLAST of Lcy11g016340 vs. NCBI nr
Match: KAA0067291.1 (protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 2.7e-08
Identity = 31/69 (44.93%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 59  IVDFIDVDSTTSSVPVGEDSIFQSKDELKKAIYLLAIKNSFQLRTIKSNQKSFVVGCKDM 118
           I+D    +S+   +P+   S+F+ K  LKKAIY+LA+ +SF+L T++SN+ SF + CKD 
Sbjct: 73  IIDLNAFESSHIDIPIRVGSMFRQKSVLKKAIYMLALNSSFELVTVRSNRTSFDIICKDP 132

Query: 119 ACCWYIRSS 128
           +C WY+R+S
Sbjct: 133 SCPWYLRAS 141

[Close]

BLAST of Lcy11g016340 vs. NCBI nr
Match: TYK10904.1 (uncharacterized protein E5676_scaffold231G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 2.7e-08
Identity = 31/69 (44.93%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 59  IVDFIDVDSTTSSVPVGEDSIFQSKDELKKAIYLLAIKNSFQLRTIKSNQKSFVVGCKDM 118
           I+D    +S+   +P+   S+F+ K  LKKAIY+LA+ +SF+L T++SN+ SF + CKD 
Sbjct: 73  IIDLNAFESSHIDIPIRVGSMFRQKSVLKKAIYMLALNSSFELVTVRSNRTSFDIICKDP 132

Query: 119 ACCWYIRSS 128
           +C WY+R+S
Sbjct: 133 SCPWYLRAS 141

[Close]

BLAST of Lcy11g016340 vs. NCBI nr
Match: XP_016901440.1 (PREDICTED: uncharacterized protein LOC107991253 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 3.6e-08
Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 59  IVDFIDVDSTTSSVPVGEDSIFQSKDELKKAIYLLAIKNSFQLRTIKSNQKSFVVGCKDM 118
           I+DF   +S  + + +   S+F+ K  LKKAIY+LA+ +SF+L T++SN+ SF + CKD 
Sbjct: 46  IIDFNAFESPNTVIHIRVGSMFRQKLVLKKAIYMLALNSSFELVTVRSNRTSFDIRCKDP 105

Query: 119 ACCWYIRSS 128
           AC WY+R+S
Sbjct: 106 ACPWYLRAS 114

The following BLAST results are available for this feature:

BLAST of Lcy11g016340 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g016340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CE11	1.0e-08	44.93	DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7VNV1	1.3e-08	44.93	Protein FAR1-RELATED SEQUENCE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3CIA4	1.3e-08	44.93	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4E0D5	1.7e-08	46.38	uncharacterized protein LOC107991253 OS=Cucumis melo OX=3656 GN=LOC107991253 PE=...	[more]
A0A5A7TUB5	3.8e-08	42.03	DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of Lcy11g016340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887125.1	2.6e-11	50.63	uncharacterized protein LOC120077310 [Benincasa hispida]	[more]
TYK09765.1	2.1e-08	44.93	uncharacterized protein E5676_scaffold127G00490 [Cucumis melo var. makuwa]	[more]
KAA0067291.1	2.7e-08	44.93	protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa]	[more]
TYK10904.1	2.7e-08	44.93	uncharacterized protein E5676_scaffold231G00820 [Cucumis melo var. makuwa]	[more]
XP_016901440.1	3.6e-08	46.38	PREDICTED: uncharacterized protein LOC107991253 [Cucumis melo]	[more]

BLAST of Lcy11g016340 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004332	Transposase, MuDR, plant	PFAM	PF03108	DBD_Tnp_Mut	coord: 79..126 e-value: 3.0E-9 score: 36.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g016340.1	Lcy11g016340.1	mRNA