Lcy11g016260 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g016260
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNA-binding protein pno1
Location	Chr11: 39309734 .. 39310739 (-)
RNA-Seq Expression	Lcy11g016260
Synteny	Lcy11g016260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCGACCGAAGCCTCCACTTCCATGGAAGTGGAAACAGTTTCAACTCAAACGAAAGATGTAGTTAGCACATTGCCACCAAAACCACAGTTTGATCCTCTAAAGCCTCATGAGATGAATGATGGTCGGGTTCAGTTCCGAAAGGTCTCTGTTCCTCCGCATCGCTACTCACCTCTCAAGAAAGCATGGATGGAGATTTACACCCCAATATATGAGCAGATGAAAATCGACATTCGAATGAACCTCAAGGCACGCAAAGTCGAATTGAAAACCAGAGCAGACACGCCTGACATCAGTAACTTGCAGAAGTGTGCGGATTTTGTCCATGCCTTCATGCTTGGTTTCGATGTGATTGATGCCATTGCACTCTTACGGGTGGACGAACTCTATGTGGAGTCTTTTGAGATTAAAGATGTTAAAACGCTGCGAGGCGAGCACTTGTCCCGTGCCATAGGCAGATTGTCTGGTAAAGCTGGTAAGACAAAGTTCGCAATTGAAAACGCCACGAAGACGAGGATAGTTATTGCAGATACCAAGATTCACATATTAGGATCCTTTGCTAATATCAAGATTGCAAGGGATTCCCTTTGCAGCCTCATTTTAGGGTCCCCTGCAGGAAAAGTTTATTCAAAGCTAAGAGCAGTTACAGCCAGATTGGCGGAAAGGTTTTGATCTTCCATGATTATAAAGGACTCTTTGTGAGTTTCTTTTGATTAATTATTTTTGCTTACAAGGTATTTGAGGAAGAATGTATAACCTTGTCGAAAAGCTTGTGCATTGAAGTTTTGTCCAAGATACTGACTATTCTTCACAAAATGGGTATTAGGGATTGGCATTTGCTGGTGTCGTGTTTGCTTGTTGATTGAGGTTCGTGTTTGCTTCATTTTTTTTTTTTTGTCTGACTGGGTTTTAAGTTAGATTTTGTATCACTCATTTGTGTGATTGCTTGAAACTTTCGATGCTTCCAAGTGGTTATCATTCGTATTTATTTAGCCCCAACACA

mRNA sequence

ATGAATTCGACCGAAGCCTCCACTTCCATGGAAGTGGAAACAGTTTCAACTCAAACGAAAGATGTAGTTAGCACATTGCCACCAAAACCACAGTTTGATCCTCTAAAGCCTCATGAGATGAATGATGGTCGGGTTCAGTTCCGAAAGGTCTCTGTTCCTCCGCATCGCTACTCACCTCTCAAGAAAGCATGGATGGAGATTTACACCCCAATATATGAGCAGATGAAAATCGACATTCGAATGAACCTCAAGGCACGCAAAGTCGAATTGAAAACCAGAGCAGACACGCCTGACATCAGTAACTTGCAGAAGTGTGCGGATTTTGTCCATGCCTTCATGCTTGGTTTCGATGTGATTGATGCCATTGCACTCTTACGGGTGGACGAACTCTATGTGGAGTCTTTTGAGATTAAAGATGTTAAAACGCTGCGAGGCGAGCACTTGTCCCGTGCCATAGGCAGATTGTCTGGTAAAGCTGGTAAGACAAAGTTCGCAATTGAAAACGCCACGAAGACGAGGATAGTTATTGCAGATACCAAGATTCACATATTAGGATCCTTTGCTAATATCAAGATTGCAAGGGATTCCCTTTGCAGCCTCATTTTAGGGTCCCCTGCAGGAAAAGTTTATTCAAAGCTAAGAGCAGTTACAGCCAGATTGGCGGAAAGGTTTTGATCTTCCATGATTATAAAGGACTCTTTGTGAGTTTCTTTTGATTAATTATTTTTGCTTACAAGGTATTTGAGGAAGAATGTATAACCTTGTCGAAAAGCTTGTGCATTGAAGTTTTGTCCAAGATACTGACTATTCTTCACAAAATGGGTATTAGGGATTGGCATTTGCTGGTGTCGTGTTTGCTTGTTGATTGAGGTTCGTGTTTGCTTCATTTTTTTTTTTTTGTCTGACTGGGTTTTAAGTTAGATTTTGTATCACTCATTTGTGTGATTGCTTGAAACTTTCGATGCTTCCAAGTGGTTATCATTCGTATTTATTTAGCCCCAACACA

Coding sequence (CDS)

ATGAATTCGACCGAAGCCTCCACTTCCATGGAAGTGGAAACAGTTTCAACTCAAACGAAAGATGTAGTTAGCACATTGCCACCAAAACCACAGTTTGATCCTCTAAAGCCTCATGAGATGAATGATGGTCGGGTTCAGTTCCGAAAGGTCTCTGTTCCTCCGCATCGCTACTCACCTCTCAAGAAAGCATGGATGGAGATTTACACCCCAATATATGAGCAGATGAAAATCGACATTCGAATGAACCTCAAGGCACGCAAAGTCGAATTGAAAACCAGAGCAGACACGCCTGACATCAGTAACTTGCAGAAGTGTGCGGATTTTGTCCATGCCTTCATGCTTGGTTTCGATGTGATTGATGCCATTGCACTCTTACGGGTGGACGAACTCTATGTGGAGTCTTTTGAGATTAAAGATGTTAAAACGCTGCGAGGCGAGCACTTGTCCCGTGCCATAGGCAGATTGTCTGGTAAAGCTGGTAAGACAAAGTTCGCAATTGAAAACGCCACGAAGACGAGGATAGTTATTGCAGATACCAAGATTCACATATTAGGATCCTTTGCTAATATCAAGATTGCAAGGGATTCCCTTTGCAGCCTCATTTTAGGGTCCCCTGCAGGAAAAGTTTATTCAAAGCTAAGAGCAGTTACAGCCAGATTGGCGGAAAGGTTTTGA

Protein sequence

MNSTEASTSMEVETVSTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF

Homology

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BLAST of Lcy11g016260 vs. ExPASy Swiss-Prot
Match: Q9VR89 (RNA-binding protein pno1 OS=Drosophila melanogaster OX=7227 GN=l(1)G0004 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 3.0e-66
Identity = 123/187 (65.78%), Postives = 156/187 (83.42%), Query Frame = 0


Query: 37  PHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADT 96
           P +    R + RKVSVPPHRYS LK+ WM+I+TP+ E MK+ IR N+KAR+VEL+   +T
Sbjct: 53  PPKAKRARSELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPET 112

Query: 97  PDISNLQKCADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLS 156
           PDI+NLQ+ ADFV AF+ GF+V DA+ALLR+++L+VESFEIKDVKTLRG+H SRAIGRL+
Sbjct: 113 PDIANLQRGADFVRAFLCGFEVDDALALLRLEDLFVESFEIKDVKTLRGDHQSRAIGRLA 172

Query: 157 GKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAV 216
           GK G+TKF IEN TKTRIV+AD+KIHILGS+ NI++AR ++C+LILGSP  KVY  LRAV
Sbjct: 173 GKGGRTKFTIENVTKTRIVLADSKIHILGSYQNIQLARRAVCNLILGSPPSKVYGNLRAV 232

Query: 217 TARLAER 224
            +RL+ER
Sbjct: 233 ASRLSER 239

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BLAST of Lcy11g016260 vs. ExPASy Swiss-Prot
Match: A7RP64 (RNA-binding protein pno1 OS=Nematostella vectensis OX=45351 GN=pno1 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.6e-65
Identity = 119/196 (60.71%), Postives = 157/196 (80.10%), Query Frame = 0


Query: 29  KPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKV 88
           +P F P+K  ++  G+ + RK+ VP HRY+PLK+ WM+I+TP+ E +K+ IR NL +R V
Sbjct: 43  RPSFPPVKAQKLAGGKSETRKIPVPSHRYTPLKENWMKIFTPVVEHLKLQIRFNLGSRHV 102

Query: 89  ELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHL 148
           E++   +T DI  +QK ADFV AF+LGF+V DA+AL+R+D+L++ESFEI DVK L+G+HL
Sbjct: 103 EIRASKETSDIGAVQKAADFVQAFILGFEVEDALALIRLDDLFLESFEIADVKPLKGDHL 162

Query: 149 SRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGK 208
           SRAIGR++GK GKTKF IEN TKTRIV+A+TKIHILGSF NIKIAR ++C+LILGSP  K
Sbjct: 163 SRAIGRVAGKGGKTKFTIENVTKTRIVLAETKIHILGSFQNIKIARTAICNLILGSPPSK 222

Query: 209 VYSKLRAVTARLAERF 225
           VY  +RAV +R AERF
Sbjct: 223 VYGNMRAVASRSAERF 238

[Close]

BLAST of Lcy11g016260 vs. ExPASy Swiss-Prot
Match: Q29IG6 (RNA-binding protein pno1 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=l(1)G0004 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.3e-65
Identity = 120/178 (67.42%), Postives = 153/178 (85.96%), Query Frame = 0


Query: 46  QFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKC 105
           + RKVSVPPHRYS LK+ WM+I+TP+ E MK+ IR N+KAR+VEL+   +TPDI+NLQK 
Sbjct: 60  ELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPETPDIANLQKG 119

Query: 106 ADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFA 165
           ADFV AF+ GF+V DA+ALLR+++L+VE+FEIKDVKTLRG+H SRAIGRL+GK G+TKF 
Sbjct: 120 ADFVKAFLCGFEVDDALALLRLEDLFVETFEIKDVKTLRGDHQSRAIGRLAGKGGRTKFT 179

Query: 166 IENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAER 224
           IEN TKTRIV+AD+KIHILGS+ NI++AR ++C+LILGSP  KVY  LR+V +RL+ER
Sbjct: 180 IENVTKTRIVLADSKIHILGSYQNIQLARRAICNLILGSPPSKVYGNLRSVASRLSER 237

[Close]

BLAST of Lcy11g016260 vs. ExPASy Swiss-Prot
Match: Q6VEU3 (RNA-binding protein PNO1 OS=Danio rerio OX=7955 GN=pno1 PE=2 SV=2)

HSP 1 Score: 248.4 bits (633), Expect = 7.4e-65
Identity = 124/211 (58.77%), Postives = 162/211 (76.78%), Query Frame = 0


Query: 15  VSTQTKDVVSTLPPK-PQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYE 74
           + TQT++  S+ P K P F  L   ++  G  + RKV VP HRY+PLK+ W++I+TPI E
Sbjct: 42  MDTQTEESSSSAPVKRPHFPALSGDQLGGGVDEMRKVPVPSHRYTPLKENWLKIFTPIVE 101

Query: 75  QMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRVDELYVE 134
            +++ +R NLK R+VE+KT  +T DI  L + ADFV AF+LGF V DA+AL+R+DEL++E
Sbjct: 102 NLQLQVRFNLKTRQVEIKTCKETQDIGALTRAADFVKAFVLGFQVEDALALIRLDELFLE 161

Query: 135 SFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIA 194
           +F++ DVK L+G+HLSRAIGR++GK GKTKF IEN TKTRIV+ADTKIHILGSF NIK+A
Sbjct: 162 TFDVTDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTKTRIVLADTKIHILGSFQNIKMA 221

Query: 195 RDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           R ++C+LILGSP  KVY  LRAV  R AERF
Sbjct: 222 RTAICNLILGSPPSKVYGNLRAVATRSAERF 252

[Close]

BLAST of Lcy11g016260 vs. ExPASy Swiss-Prot
Match: Q5F414 (RNA-binding protein PNO1 OS=Gallus gallus OX=9031 GN=PNO1 PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.8e-64
Identity = 119/196 (60.71%), Postives = 156/196 (79.59%), Query Frame = 0


Query: 29  KPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKV 88
           +P F PL    +  G+ + RKV VP +RY+PLK+ WM+I+TPI E +++ IR NLK R V
Sbjct: 47  RPAFPPLPAAALGVGKGEVRKVPVPANRYTPLKENWMKIFTPIVEHLQLQIRFNLKTRNV 106

Query: 89  ELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHL 148
           E+KT ++T D+S L K ADFV AF+LGF V DA+AL+R+D+L++ESFE+ DVK L+G+HL
Sbjct: 107 EIKTCSETKDLSALTKAADFVKAFILGFQVEDALALIRLDDLFLESFEVTDVKPLKGDHL 166

Query: 149 SRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGK 208
           SRAIGR++GK GKTKF IEN T+TRIV+AD+KIHILGSF NIK+AR ++C+LILGSP  K
Sbjct: 167 SRAIGRIAGKGGKTKFTIENVTRTRIVLADSKIHILGSFQNIKMARTAICNLILGSPPSK 226

Query: 209 VYSKLRAVTARLAERF 225
           VY  +RAV +R AERF
Sbjct: 227 VYGNIRAVASRAAERF 242

[Close]

BLAST of Lcy11g016260 vs. ExPASy TrEMBL
Match: A0A1S3BLP2 (RNA-binding protein pno1 OS=Cucumis melo OX=3656 GN=LOC103491005 PE=3 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 1.5e-116
Identity = 220/224 (98.21%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MNSTEASTSMEVETVSTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           M STEASTSMEVET+STQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEASTSMEVETISTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIY+QMKID+RMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYDQMKIDVRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Lcy11g016260 vs. ExPASy TrEMBL
Match: A0A6J1EWL7 (RNA-binding protein pno1 OS=Cucurbita moschata OX=3662 GN=LOC111438772 PE=3 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 9.6e-116
Identity = 219/224 (97.77%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MNSTEASTSMEVETVSTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           M STEASTSMEVETVST+TK+VVSTLPPKPQFDPLKPHEMNDGR+QFRKVSVPPHRY+PL
Sbjct: 1   MQSTEASTSMEVETVSTETKNVVSTLPPKPQFDPLKPHEMNDGRIQFRKVSVPPHRYTPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Lcy11g016260 vs. ExPASy TrEMBL
Match: A0A6J1HQ98 (RNA-binding protein pno1-like OS=Cucurbita maxima OX=3661 GN=LOC111465109 PE=3 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 1.1e-114
Identity = 217/224 (96.88%), Postives = 222/224 (99.11%), Query Frame = 0


Query: 1   MNSTEASTSMEVETVSTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           M  TEASTSMEVETVST+TK+VVSTLPPKPQFDPLKPHEMNDGR+QFRKVSVPPHRY+PL
Sbjct: 1   MQPTEASTSMEVETVSTETKNVVSTLPPKPQFDPLKPHEMNDGRIQFRKVSVPPHRYTPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAF+LGFDVID
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFILGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Lcy11g016260 vs. ExPASy TrEMBL
Match: A0A6J1KXN9 (RNA-binding protein pno1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498497 PE=3 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 1.8e-114
Identity = 219/224 (97.77%), Postives = 219/224 (97.77%), Query Frame = 0


Query: 1   MNSTEASTSMEVETVSTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           M STEASTSMEVE VSTQ K VVSTLPPKP FDPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEASTSMEVEAVSTQPKPVVSTLPPKPHFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Lcy11g016260 vs. ExPASy TrEMBL
Match: A0A0A0L7D9 (KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G045150 PE=3 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 3.1e-114
Identity = 217/224 (96.88%), Postives = 221/224 (98.66%), Query Frame = 0


Query: 1   MNSTEASTSMEVETVSTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           M S EASTSM+VET+STQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSNEASTSMDVETISTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWM+IYTPIY+QMKIDIRMNLKARKVELKTRADTPDISNLQK ADFVHAFMLGFDVID
Sbjct: 61  KKAWMDIYTPIYDQMKIDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Lcy11g016260 vs. NCBI nr
Match: XP_008449001.1 (PREDICTED: RNA-binding protein pno1 [Cucumis melo])

HSP 1 Score: 428.7 bits (1101), Expect = 3.1e-116
Identity = 220/224 (98.21%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MNSTEASTSMEVETVSTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           M STEASTSMEVET+STQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEASTSMEVETISTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIY+QMKID+RMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYDQMKIDVRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Lcy11g016260 vs. NCBI nr
Match: XP_022932417.1 (RNA-binding protein pno1 [Cucurbita moschata])

HSP 1 Score: 426.0 bits (1094), Expect = 2.0e-115
Identity = 219/224 (97.77%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MNSTEASTSMEVETVSTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           M STEASTSMEVETVST+TK+VVSTLPPKPQFDPLKPHEMNDGR+QFRKVSVPPHRY+PL
Sbjct: 1   MQSTEASTSMEVETVSTETKNVVSTLPPKPQFDPLKPHEMNDGRIQFRKVSVPPHRYTPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Lcy11g016260 vs. NCBI nr
Match: KAG7015597.1 (RNA-binding protein pno1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 424.9 bits (1091), Expect = 4.4e-115
Identity = 218/224 (97.32%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MNSTEASTSMEVETVSTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           M STE+STSMEVETVST+TK+VVSTLPPKPQFDPLKPHEMNDGR+QFRKVSVPPHRY+PL
Sbjct: 1   MQSTESSTSMEVETVSTETKNVVSTLPPKPQFDPLKPHEMNDGRIQFRKVSVPPHRYTPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Lcy11g016260 vs. NCBI nr
Match: KAG6577533.1 (Gamma-tubulin complex component 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 423.3 bits (1087), Expect = 1.3e-114
Identity = 217/224 (96.88%), Postives = 222/224 (99.11%), Query Frame = 0


Query: 1   MNSTEASTSMEVETVSTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           M STE+STSMEVETVST+TK+VVSTLPPKPQFDPLKPHEMNDGR+QFRKVSVPPHRY+PL
Sbjct: 710 MQSTESSTSMEVETVSTETKNVVSTLPPKPQFDPLKPHEMNDGRIQFRKVSVPPHRYTPL 769

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYEQMKIDIRMNLK RKVELKTRADTPDISNLQKCADFVHAFMLGFDVID
Sbjct: 770 KKAWMEIYTPIYEQMKIDIRMNLKVRKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 829

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 830 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 889

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 890 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 933

[Close]

BLAST of Lcy11g016260 vs. NCBI nr
Match: XP_022965174.1 (RNA-binding protein pno1-like [Cucurbita maxima])

HSP 1 Score: 422.5 bits (1085), Expect = 2.2e-114
Identity = 217/224 (96.88%), Postives = 222/224 (99.11%), Query Frame = 0


Query: 1   MNSTEASTSMEVETVSTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           M  TEASTSMEVETVST+TK+VVSTLPPKPQFDPLKPHEMNDGR+QFRKVSVPPHRY+PL
Sbjct: 1   MQPTEASTSMEVETVSTETKNVVSTLPPKPQFDPLKPHEMNDGRIQFRKVSVPPHRYTPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAF+LGFDVID
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFILGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Lcy11g016260 vs. TAIR 10
Match: AT3G13230.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 347.8 bits (891), Expect = 6.4e-96
Identity = 176/216 (81.48%), Postives = 198/216 (91.67%), Query Frame = 0


Query: 7   STSMEVETVSTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWME 66
           ST MEVET +  T      LPPKP F PLK HEM+DG+VQFRK++VPP+RYSPLKKAW++
Sbjct: 4   STQMEVETATEGT----VPLPPKPTFKPLKAHEMSDGKVQFRKIAVPPNRYSPLKKAWLD 63

Query: 67  IYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLR 126
           IYTPIY+QMK+DIRMNLKARKVELKTRADTPDISNLQK ADFVHAFMLGFD+ DAI+LLR
Sbjct: 64  IYTPIYDQMKVDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDIPDAISLLR 123

Query: 127 VDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGS 186
           +DELYVESFEIKDVKTL+GEHLSRAIGRLSGK GKTKFAIEN+TKTRIVIADT+IHILG+
Sbjct: 124 MDELYVESFEIKDVKTLKGEHLSRAIGRLSGKGGKTKFAIENSTKTRIVIADTRIHILGA 183

Query: 187 FANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAE 223
           F+NIK+AR SLCSLI+GSPAGKVYSKLR+V+ARL E
Sbjct: 184 FSNIKVARSSLCSLIMGSPAGKVYSKLRSVSARLNE 215

The following BLAST results are available for this feature:

BLAST of Lcy11g016260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9VR89	3.0e-66	65.78	RNA-binding protein pno1 OS=Drosophila melanogaster OX=7227 GN=l(1)G0004 PE=2 SV...	[more]
A7RP64	2.6e-65	60.71	RNA-binding protein pno1 OS=Nematostella vectensis OX=45351 GN=pno1 PE=3 SV=1	[more]
Q29IG6	3.3e-65	67.42	RNA-binding protein pno1 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=l...	[more]
Q6VEU3	7.4e-65	58.77	RNA-binding protein PNO1 OS=Danio rerio OX=7955 GN=pno1 PE=2 SV=2	[more]
Q5F414	4.8e-64	60.71	RNA-binding protein PNO1 OS=Gallus gallus OX=9031 GN=PNO1 PE=2 SV=1	[more]

BLAST of Lcy11g016260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BLP2	1.5e-116	98.21	RNA-binding protein pno1 OS=Cucumis melo OX=3656 GN=LOC103491005 PE=3 SV=1	[more]
A0A6J1EWL7	9.6e-116	97.77	RNA-binding protein pno1 OS=Cucurbita moschata OX=3662 GN=LOC111438772 PE=3 SV=1	[more]
A0A6J1HQ98	1.1e-114	96.88	RNA-binding protein pno1-like OS=Cucurbita maxima OX=3661 GN=LOC111465109 PE=3 S...	[more]
A0A6J1KXN9	1.8e-114	97.77	RNA-binding protein pno1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A0A0L7D9	3.1e-114	96.88	KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G045150 PE=3 SV=...	[more]

BLAST of Lcy11g016260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449001.1	3.1e-116	98.21	PREDICTED: RNA-binding protein pno1 [Cucumis melo]	[more]
XP_022932417.1	2.0e-115	97.77	RNA-binding protein pno1 [Cucurbita moschata]	[more]
KAG7015597.1	4.4e-115	97.32	RNA-binding protein pno1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6577533.1	1.3e-114	96.88	Gamma-tubulin complex component 2, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022965174.1	2.2e-114	96.88	RNA-binding protein pno1-like [Cucurbita maxima]	[more]

BLAST of Lcy11g016260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13230.1	6.4e-96	81.48	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 129..202 e-value: 1.7E-4 score: 31.0
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 128..224 e-value: 1.1E-22 score: 81.9
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 129..223
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	PANTHER	PTHR12826	RIBONUCLEASE Y	coord: 7..224
IPR039912	Pre-rRNA-processing protein PNO1-like	PANTHER	PTHR12826:SF13	RNA-BINDING PROTEIN PNO1	coord: 7..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g016260.1	Lcy11g016260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding