Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTCACACTCCAGCACAAAAGGACTGCTGAACAAGCCATTTCCTCACTACGAGGATCTTGCTTTTGTGTTCGGCAAAGACAGGGCAAGTGGCGGCGCGTGCAATGTTCCAGTGGAACAGGCCAACAGCAACCACGGGGACGACGAGGGTGATCAGAATGTCCAGGCGGACCAGGATTGTTATGTCCCCGCTCCTCCAGACATTAATCTGGCAGCAAACGTGGAGTTCGATGATGTCCCAATCACACCGACAAGTCAACCAAGCACTGTAGGGTCCTCCCAAAGTCGGAAGCGTAGCAGAGCATCATATGAAGCGGAAGCCCTTGATATTATGAGGCAGTCAGTGGCTATGCAGAAGACACAGCTCACTAAGATCGCTGACTGGCCGGACGCCCAAGACGCACGAGAGTTCAAGAGGCGGGACACGATCGGAGAGATGCTCCTATCGCAGCAGGAGCTATTGGACGATGAGAGAGTTGCTCTTATGCACATCCTATTCGCCGACCCGAAGATGACAAATATGATGTTGTTTGTGCCACCCAGCCTCAGGCTTCACTTTCTACGAAGACTACTCAACGAACGCCGGTGA
mRNA sequence
ATGCAGTCACACTCCAGCACAAAAGGACTGCTGAACAAGCCATTTCCTCACTACGAGGATCTTGCTTTTGTGTTCGGCAAAGACAGGGCAAGTGGCGGCGCGTGCAATGTTCCAGTGGAACAGGCCAACAGCAACCACGGGGACGACGAGGGTGATCAGAATGTCCAGGCGGACCAGGATTGTTATGTCCCCGCTCCTCCAGACATTAATCTGGCAGCAAACGTGGAGTTCGATGATGTCCCAATCACACCGACAAGTCAACCAAGCACTGTAGGGTCCTCCCAAAGTCGGAAGCGTAGCAGAGCATCATATGAAGCGGAAGCCCTTGATATTATGAGGCAGTCAGTGGCTATGCAGAAGACACAGCTCACTAAGATCGCTGACTGGCCGGACGCCCAAGACGCACGAGAGTTCAAGAGGCGGGACACGATCGGAGAGATGCTCCTATCGCAGCAGGAGCTATTGGACGATGAGAGAGTTGCTCTTATGCACATCCTATTCGCCGACCCGAAGATGACAAATATGATGTTGTTTGTGCCACCCAGCCTCAGGCTTCACTTTCTACGAAGACTACTCAACGAACGCCGGTGA
Coding sequence (CDS)
ATGCAGTCACACTCCAGCACAAAAGGACTGCTGAACAAGCCATTTCCTCACTACGAGGATCTTGCTTTTGTGTTCGGCAAAGACAGGGCAAGTGGCGGCGCGTGCAATGTTCCAGTGGAACAGGCCAACAGCAACCACGGGGACGACGAGGGTGATCAGAATGTCCAGGCGGACCAGGATTGTTATGTCCCCGCTCCTCCAGACATTAATCTGGCAGCAAACGTGGAGTTCGATGATGTCCCAATCACACCGACAAGTCAACCAAGCACTGTAGGGTCCTCCCAAAGTCGGAAGCGTAGCAGAGCATCATATGAAGCGGAAGCCCTTGATATTATGAGGCAGTCAGTGGCTATGCAGAAGACACAGCTCACTAAGATCGCTGACTGGCCGGACGCCCAAGACGCACGAGAGTTCAAGAGGCGGGACACGATCGGAGAGATGCTCCTATCGCAGCAGGAGCTATTGGACGATGAGAGAGTTGCTCTTATGCACATCCTATTCGCCGACCCGAAGATGACAAATATGATGTTGTTTGTGCCACCCAGCCTCAGGCTTCACTTTCTACGAAGACTACTCAACGAACGCCGGTGA
Protein sequence
MQSHSSTKGLLNKPFPHYEDLAFVFGKDRASGGACNVPVEQANSNHGDDEGDQNVQADQDCYVPAPPDINLAANVEFDDVPITPTSQPSTVGSSQSRKRSRASYEAEALDIMRQSVAMQKTQLTKIADWPDAQDAREFKRRDTIGEMLLSQQELLDDERVALMHILFADPKMTNMMLFVPPSLRLHFLRRLLNERR
Homology
BLAST of Lcy11g015850 vs. ExPASy TrEMBL
Match:
A0A6J1DW73 (uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025018 PE=4 SV=1)
HSP 1 Score: 120.2 bits (300), Expect = 9.9e-24
Identity = 72/194 (37.11%), Postives = 110/194 (56.70%), Query Frame = 0
Query: 1 MQSHSSTKGLLNKPFPHYEDLAFVFGKDRASGGACNVPVEQANSNHGDDEGDQNVQADQD 60
++SH + KGL NKP PHY+DL FGKDRA+G + PV+ A+S D + +A QD
Sbjct: 25 VKSHPNAKGLRNKP-PHYDDLTVAFGKDRATGANLDCPVDMASSAAATIAEDAHFEA-QD 84
Query: 61 CYVPAPPDINLAANVEFDDVPITPTSQPSTVGSSQSRKRSRASYEAEALDIMRQSVAMQK 120
Y+P PP N + +D+P TPTS+P+ SS KR R+ Y +E +D++R ++ MQ
Sbjct: 85 FYIPDPPMFNTTEDAIEEDLPNTPTSKPTIGTSSGGSKRKRSGYTSEMVDVVRTNMRMQT 144
Query: 121 TQLTKIADWPDAQDAREFKRRDTIGEMLLSQQELLDDERVALMHILFADPKMTNMMLFVP 180
L K+A WPD ++ ++ RR + + L L ++ V L+ IL + K + L VP
Sbjct: 145 AHLEKMATWPDKKEEKKIARRKIVHDQLKQIPNLEANDYVRLVGILMTNVKKSISFLEVP 204
Query: 181 PSLRLHFLRRLLNE 195
+ F +LL +
Sbjct: 205 IEFKKMFCMQLLGK 216
BLAST of Lcy11g015850 vs. ExPASy TrEMBL
Match:
A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)
HSP 1 Score: 86.3 bits (212), Expect = 1.6e-13
Identity = 58/180 (32.22%), Postives = 89/180 (49.44%), Query Frame = 0
Query: 1 MQSHSSTKGLLNKPFPHYEDLAFVFGKDRASGGACNVPVEQANSNHGDDEGDQNVQADQD 60
++ H + +GLLNKPFP++ DL VFG+DRA+GG C PVE ++ D E D +D
Sbjct: 220 VKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRCKTPVEMSSQTARDTEEDDMDINLED 279
Query: 61 CYVPAPPDINLAANVEFDDVPITPTSQPSTVGSSQSRKRSRASYEAEALDIMRQSVAMQK 120
+P P + + +D+P TPTS GSS+ K+ R SY + +D R S+
Sbjct: 280 FDIPNPHGLEPPSG---EDMPSTPTSMTHDAGSSRPSKK-RRSYSGDLMDTFRASMRETS 339
Query: 121 TQLTKIADWPDAQDAREFKRRDTIGEMLLSQQELLDDERVALMHILFADPKMTNMMLFVP 180
++ KIA W + E + L + + D+ + + L DP M + L P
Sbjct: 340 KEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYP 395
BLAST of Lcy11g015850 vs. ExPASy TrEMBL
Match:
A0A5A7VBC5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1290G00070 PE=4 SV=1)
HSP 1 Score: 85.1 bits (209), Expect = 3.5e-13
Identity = 64/198 (32.32%), Postives = 102/198 (51.52%), Query Frame = 0
Query: 1 MQSHSSTKGLLNKPFPHYEDLAFVFGKDRASGGACNVPVEQANSNHGDDEGDQNVQA-DQ 60
++SH + KGLLNK F HY++L++VFGKDRA+G VE + +D + + A D
Sbjct: 82 VKSHPAAKGLLNKSFFHYDELSYVFGKDRATGDR----VESFANVRSNDPAEYDAFATDA 141
Query: 61 DCYVPAPPDINLAANVEFDDVPITPTSQPSTVGS-SQSRKRSRASYEAEALDIMRQSVAM 120
PP + N+ DD+ T T++ S + S KR RA + ++ DI+R ++
Sbjct: 142 VPDTDFPPMYSQGLNMSPDDLMGTRTARVSERRNVSSGSKRKRAGHATDSGDIVRTAIEY 201
Query: 121 QKTQLTKIADWPDAQDAREFKRRDTIGEMLLSQQELLDDERVALMHILFADPKMTNMMLF 180
+ QL +IA+WP Q + R + L + EL+ +R LMHIL + L
Sbjct: 202 RNEQLNRIAEWPVLQRQNASQTRQEVVRQLEAIPELILMDRCRLMHILMCNVDDMKAFLD 261
Query: 181 VPPSLRLHFLRRLLNERR 197
VP +++ + +L E R
Sbjct: 262 VPDNMKYSYYNIILQENR 275
BLAST of Lcy11g015850 vs. ExPASy TrEMBL
Match:
A0A5D3CIF5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00370 PE=4 SV=1)
HSP 1 Score: 81.6 bits (200), Expect = 3.9e-12
Identity = 63/198 (31.82%), Postives = 101/198 (51.01%), Query Frame = 0
Query: 1 MQSHSSTKGLLNKPFPHYEDLAFVFGKDRASGGACNVPVEQANSNHGDDEGDQNVQA-DQ 60
++SH + KGLLNK F HY++L++VFGK RA+G VE + +D + + A D
Sbjct: 82 VKSHPAAKGLLNKSFLHYDELSYVFGKYRATGDR----VESFANVRSNDPAEYDAFATDA 141
Query: 61 DCYVPAPPDINLAANVEFDDVPITPTSQPSTVGS-SQSRKRSRASYEAEALDIMRQSVAM 120
PP + N+ DD+ T T++ S + S KR RA + ++ DI+R ++
Sbjct: 142 VPDTDFPPMYSQGLNMSPDDLMGTRTARVSERRNVSSGSKRKRAGHATDSGDIVRTAIEY 201
Query: 121 QKTQLTKIADWPDAQDAREFKRRDTIGEMLLSQQELLDDERVALMHILFADPKMTNMMLF 180
+ QL +IA+WP Q + R + L + EL+ +R LMHIL + L
Sbjct: 202 RNEQLNRIAEWPVLQRQNASQTRQEVVRKLEAIPELILMDRCRLMHILMCNVDDMKAFLD 261
Query: 181 VPPSLRLHFLRRLLNERR 197
VP +++ + +L E R
Sbjct: 262 VPDNMKYSYYNIILQENR 275
BLAST of Lcy11g015850 vs. ExPASy TrEMBL
Match:
A0A5A7U7R0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00810 PE=4 SV=1)
HSP 1 Score: 81.3 bits (199), Expect = 5.1e-12
Identity = 61/195 (31.28%), Postives = 97/195 (49.74%), Query Frame = 0
Query: 1 MQSHSSTKGLLNKPFPHYEDLAFVFGKDRASGGACNVPVEQANSNHGDDEGDQNVQADQD 60
++SH + KGLLNK F HY++L++VFGKDRA+GG + +N + + AD
Sbjct: 17 VKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRTECFADIGLNNPAEYDA---FAADAA 76
Query: 61 CYVPAPPDINLAANVEFDDVPITPTSQPSTVGSSQS-RKRSRASYEAEALDIMRQSVAMQ 120
PP + N+ DD+ T T++ S + S KR R + ++ DI+R ++
Sbjct: 77 TDTDFPPMYSQGLNMSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIEYG 136
Query: 121 KTQLTKIADWPDAQDAREFKRRDTIGEMLLSQQELLDDERVALMHILFADPKMTNMMLFV 180
Q+ +IA+WP Q + R I L + EL +R LMHIL + L V
Sbjct: 137 NEQVNRIAEWPVLQRQDASQTRQEIVRQLEAIPELTLIDRCRLMHILMRNVDDMKAFLEV 196
Query: 181 PPSLRLHFLRRLLNE 195
P +++ + +L E
Sbjct: 197 PDNMKYSYYNIILQE 208
BLAST of Lcy11g015850 vs. NCBI nr
Match:
XP_022158565.1 (uncharacterized protein LOC111025018 [Momordica charantia])
HSP 1 Score: 120.2 bits (300), Expect = 2.0e-23
Identity = 72/194 (37.11%), Postives = 110/194 (56.70%), Query Frame = 0
Query: 1 MQSHSSTKGLLNKPFPHYEDLAFVFGKDRASGGACNVPVEQANSNHGDDEGDQNVQADQD 60
++SH + KGL NKP PHY+DL FGKDRA+G + PV+ A+S D + +A QD
Sbjct: 25 VKSHPNAKGLRNKP-PHYDDLTVAFGKDRATGANLDCPVDMASSAAATIAEDAHFEA-QD 84
Query: 61 CYVPAPPDINLAANVEFDDVPITPTSQPSTVGSSQSRKRSRASYEAEALDIMRQSVAMQK 120
Y+P PP N + +D+P TPTS+P+ SS KR R+ Y +E +D++R ++ MQ
Sbjct: 85 FYIPDPPMFNTTEDAIEEDLPNTPTSKPTIGTSSGGSKRKRSGYTSEMVDVVRTNMRMQT 144
Query: 121 TQLTKIADWPDAQDAREFKRRDTIGEMLLSQQELLDDERVALMHILFADPKMTNMMLFVP 180
L K+A WPD ++ ++ RR + + L L ++ V L+ IL + K + L VP
Sbjct: 145 AHLEKMATWPDKKEEKKIARRKIVHDQLKQIPNLEANDYVRLVGILMTNVKKSISFLEVP 204
Query: 181 PSLRLHFLRRLLNE 195
+ F +LL +
Sbjct: 205 IEFKKMFCMQLLGK 216
BLAST of Lcy11g015850 vs. NCBI nr
Match:
XP_038896380.1 (uncharacterized protein LOC120084641 [Benincasa hispida])
HSP 1 Score: 86.3 bits (212), Expect = 3.3e-13
Identity = 65/193 (33.68%), Postives = 95/193 (49.22%), Query Frame = 0
Query: 1 MQSHSSTKGLLNKPFPHYEDLAFVFGKDRASGGACNVP-VEQANSNHGDDEGDQNVQADQ 60
++SH + KG+ NK F HY+DL+ VFGKDRA+ C+ P V QA S DE D+
Sbjct: 108 VRSHLNAKGMWNKSFLHYDDLSTVFGKDRAN---CHTPEVCQAESPLNQDEIDEE----- 167
Query: 61 DCYVPAPPDINLAANVEFDDVPITPTSQPSTVGSSQSRKRSRASYEAEALDIMRQSVAMQ 120
PA A+ + SS+ KR R S++AE +DIMR +V MQ
Sbjct: 168 ----PAEQSTGRASVL---------------AESSRGSKRKRPSFQAEMIDIMRSTVEMQ 227
Query: 121 KTQLTKIADWPDAQDAREFKRRDTIGEMLLSQQELLDDERVALMHILFADPKMTNMMLFV 180
T + ++A W + EF RR + + S L +D++V + +L D + T+ L V
Sbjct: 228 STHMGRLASWQKEKYELEFGRRKEVVNAIYSIDGLDEDDQVTFIDLLVTDIQKTDCFLAV 273
Query: 181 PPSLRLHFLRRLL 193
P R + LL
Sbjct: 288 PEHARKRYCLHLL 273
BLAST of Lcy11g015850 vs. NCBI nr
Match:
TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])
HSP 1 Score: 86.3 bits (212), Expect = 3.3e-13
Identity = 58/180 (32.22%), Postives = 89/180 (49.44%), Query Frame = 0
Query: 1 MQSHSSTKGLLNKPFPHYEDLAFVFGKDRASGGACNVPVEQANSNHGDDEGDQNVQADQD 60
++ H + +GLLNKPFP++ DL VFG+DRA+GG C PVE ++ D E D +D
Sbjct: 220 VKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRCKTPVEMSSQTARDTEEDDMDINLED 279
Query: 61 CYVPAPPDINLAANVEFDDVPITPTSQPSTVGSSQSRKRSRASYEAEALDIMRQSVAMQK 120
+P P + + +D+P TPTS GSS+ K+ R SY + +D R S+
Sbjct: 280 FDIPNPHGLEPPSG---EDMPSTPTSMTHDAGSSRPSKK-RRSYSGDLMDTFRASMRETS 339
Query: 121 TQLTKIADWPDAQDAREFKRRDTIGEMLLSQQELLDDERVALMHILFADPKMTNMMLFVP 180
++ KIA W + E + L + + D+ + + L DP M + L P
Sbjct: 340 KEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYP 395
BLAST of Lcy11g015850 vs. NCBI nr
Match:
KAA0063726.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 85.1 bits (209), Expect = 7.3e-13
Identity = 64/198 (32.32%), Postives = 102/198 (51.52%), Query Frame = 0
Query: 1 MQSHSSTKGLLNKPFPHYEDLAFVFGKDRASGGACNVPVEQANSNHGDDEGDQNVQA-DQ 60
++SH + KGLLNK F HY++L++VFGKDRA+G VE + +D + + A D
Sbjct: 82 VKSHPAAKGLLNKSFFHYDELSYVFGKDRATGDR----VESFANVRSNDPAEYDAFATDA 141
Query: 61 DCYVPAPPDINLAANVEFDDVPITPTSQPSTVGS-SQSRKRSRASYEAEALDIMRQSVAM 120
PP + N+ DD+ T T++ S + S KR RA + ++ DI+R ++
Sbjct: 142 VPDTDFPPMYSQGLNMSPDDLMGTRTARVSERRNVSSGSKRKRAGHATDSGDIVRTAIEY 201
Query: 121 QKTQLTKIADWPDAQDAREFKRRDTIGEMLLSQQELLDDERVALMHILFADPKMTNMMLF 180
+ QL +IA+WP Q + R + L + EL+ +R LMHIL + L
Sbjct: 202 RNEQLNRIAEWPVLQRQNASQTRQEVVRQLEAIPELILMDRCRLMHILMCNVDDMKAFLD 261
Query: 181 VPPSLRLHFLRRLLNERR 197
VP +++ + +L E R
Sbjct: 262 VPDNMKYSYYNIILQENR 275
BLAST of Lcy11g015850 vs. NCBI nr
Match:
XP_038887234.1 (uncharacterized protein LOC120077425 [Benincasa hispida])
HSP 1 Score: 83.2 bits (204), Expect = 2.8e-12
Identity = 61/193 (31.61%), Postives = 97/193 (50.26%), Query Frame = 0
Query: 1 MQSHSSTKGLLNKPFPHYEDLAFVFGKDRASGGACNVP-VEQANSNHGDDEGDQNVQADQ 60
++SH + KG+ KPFPHY+DL+ VFGKDRA C+ P V Q S DE D+
Sbjct: 108 VRSHPNAKGMWKKPFPHYDDLSAVFGKDRAD---CHTPEVRQTESPLNQDEIDEE----- 167
Query: 61 DCYVPAPPDINLAANVEFDDVPITPTSQPSTVGSSQSRKRSRASYEAEALDIMRQSVAMQ 120
PA A+ PT SS+ KR R+S++ E +DI++ +V MQ
Sbjct: 168 ----PAEQSTGRAS---------VPTE------SSRGSKRKRSSFQVEMIDIVKSTVEMQ 227
Query: 121 KTQLTKIADWPDAQDAREFKRRDTIGEMLLSQQELLDDERVALMHILFADPKMTNMMLFV 180
T + ++A W + + E K + + + +L ++++V L+ ++ D + T+ L V
Sbjct: 228 STHMGRLASWQNEKYELELKE---VVNAIYNIDDLEENDQVTLIDLIVTDIQKTDCFLAV 270
Query: 181 PPSLRLHFLRRLL 193
P R + RLL
Sbjct: 288 PEHARKRYCLRLL 270
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DW73 | 9.9e-24 | 37.11 | uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
A0A5D3C7T4 | 1.6e-13 | 32.22 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7VBC5 | 3.5e-13 | 32.32 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3CIF5 | 3.9e-12 | 31.82 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7U7R0 | 5.1e-12 | 31.28 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
XP_022158565.1 | 2.0e-23 | 37.11 | uncharacterized protein LOC111025018 [Momordica charantia] | [more] |
XP_038896380.1 | 3.3e-13 | 33.68 | uncharacterized protein LOC120084641 [Benincasa hispida] | [more] |
TYK07921.1 | 3.3e-13 | 32.22 | hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa] | [more] |
KAA0063726.1 | 7.3e-13 | 32.32 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
XP_038887234.1 | 2.8e-12 | 31.61 | uncharacterized protein LOC120077425 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |