Lcy11g015260 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g015260
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionSuccinate--CoA ligase [ADP-forming] subunit beta, mitochondrial
LocationChr11: 34816292 .. 34821562 (+)
RNA-Seq ExpressionLcy11g015260
SyntenyLcy11g015260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCCATTCGCTTGGTGAGCTTGATGAGGTGAAGAGGAGCTGTAGAAAAAGGCTTAATGGGCACAATCGGCGTAGGAGGAAGCCTCAACCTGAATCCTTGTTTATGAGTTCAAGGGATTTTCTCTCAAATTGCAATGGTTAGTGAGTGATTTTGTTTTGCAATTTACCATAGAAATATTTATAAGTTCAAGGGATTTTCTCTCAAAGCCTCAGCCTGAACTTTGCTTTTTGGCTGCTTCTTGTATTTGATTTAGAATCTGTGAAAGAATTTCATTTTGGGCATGAAATTTGTTTCTTTTATTGTGGAGATCAGGGGGCTGAGCTGATGAACAAATATGGGATCAATGTATCCAAGGGTGTTGTTGTTTCTTCTGTCGATGAAGCAAAAAACGCAGTCCAGACTGCTTTTCCTGATGCGAAAGAGGTAAGCATGGGACCTCAAGTCTCTCTTCATCATCTCACGTTGCGAACATTCCTTTCTTTGGATGTCTGAAAATTATGCAATCACAGAAAATTTAAACCATTACAGTTATACTATTACCTTGCATGACATTTTTGTTTAGAAATGAAAATGAAGTTGGCCATTGATAATGCAGCATTGTATATTACCAAAAACTTAGCCAGTTATGAGAAGCATTATACGAAATTTGATATCTTGCAGTTGGTCATTAAAAGTCAAATTTTAGCTGGTGGAAAAGGTTTGGGGACATTCAAAAGTGGCTTAAAGGCTGGAGTTCACATTGTTAAGGTGGACCAGGTTGAAGAGTATGCTGGTAGGATGCCCTTTTGTATTTTCATCCTTCTAAAAGTTTCTTAGTTTCTAATTATTTGAATATTCTACTAGTTCTACCAAAAGATCCATTAGATTTTTTGCATATACTTAGATGATTACTCCTGAATCTCATATGAGATATACTTTTCCTGACATCTTGGAACTAACATGAGGAGCTATTCTCAAAGGCAAGACATCTATTGTAGTTTATGAAATTACGTATTACTTTTCTAGTTGAGTTTGCTTAAATGTGAATCTAATAACTTTAACGGAATATTTCAATAAAATCCTTTACCCCTGTTTTTCCTATTTTGTGTGCAGGAAAGATGCTTGGGCAGATACTTGTCACTAAACAAACTGGTCCACAGGGCAAAGTTGTCAGCAAGGTATTATTTGTCGTTTTAGTTCATTATGTTCATGAGTTGTGTACCTTTGGAAGCTAGTTTAAAGTTTTGGTTGTTTTTGTTAAAGTTTGTTTCTTTTTTTTTTTTTTTGTTAAGTTTCAATGAGTTTAATTCTGAACCTGAAATTTGCAAGCGATTTCTTAGTTGCTTTAAAGTGAAAAATAAGAAGAAAATTTAATCTTCAATTTATGTTATATGGTCTTGATATAATAGTTTTGAGGTGATTCCTATCCTAGAGATGATAAAGTTAGAGGAGTGAACTTAGGAGGATAGTTGGTCATTGACGGTTGGATTAAAAATTTCTTGAAGGAGATCTTTTTGATTCCCCAAGCAAACAAAAGGTAAGAGGGGTTGGAAGTTGACTTGGGGAATTGCTTGTTGTTTCGTACTCTGAAGATAACATCAGCCTACTCTTTTCCATACTATATTGAAATTTGAAATAATATTTTTCTTTCCAGGCCTGTAGACTTCATTTTGTAACTTTTATGTTTCAATGCTATCTCTTTTTCTTGCTTAAATATAAGAAAAATGATGCAAACCTTCTTGCTTCATTGATGTAAGAAGAATTAGCTTATCGTTTCCAGAATCAGTTTAATTCCCTCGATTGCCCTCCTATTCAAGTAGTCACCCTTCTCCTTCTTTTCATACTCATACTGTGTATGTCCCTCTTTCAAGGGGTTTCTCTAAGAGGAGATCAGGACCCAAAAGTAAAATTTCTGTATTCTGATCAATTTTTCAAGAGACAAAGTTAAGTAAGCCCTTGGCTTGATGGTACACCTCCATTTTCTGACGATTAACAAAGGTTCTACTGTAAATCAGTTCTTGAATCATGGGACTCTTAATTTGTCTATCAATTTTAGAGGACTGCTCAATGATTGGGAATTTGATGATTGGATCCAACTTTTGCATAAGCGAGGAGTTCTCATGTTTTTCATTTGCTCTTGATTTATATTAGTTGTTTTCATAAATCTCGTATGTCCAATTTGATTAGGACTTTTACTGCTAATGCTAATCTTGCCCCACCTATTTATGTTAAGATTTATCCGAAAAAAAATAGAGAAAGATAAATATCAAAAAAACAAATAAAGAAAATCCTTGTGTGTAATCTCTCTTTAAGCAGTCTTAAAACTGGTAATATAATAGAATTTAGATAAGGAATAGGTAGCTTAAGATAGAGGAATGAGACCTTGGTTGCCAAATGGTTGTGGCATTTATTTAGGAAGCCTAAGGATTTGTGGCGCCAGAGTTATTATGAGCATATACTTGCCCCCACCCTTTTGAGTGGGTCTTTTGAGTGGGTCTTTGTGTCACTGGTTCATTTGCTATGATGGTTGTTGTTTGTAGCTGGATGTTTCAAGGATCGGACTGATGTACAATGTCTGCATGGGTGACAAAAGGTTTTGAATCCTGAACTTGCCAAAGGTCCATGGTCTAAAGAGGTGATTCACTTGTGAAAGTTAGTTCTTAAGTTTATTCCATTCCAGTTATCACAATAATTTAGTCAGCATACCCTTTCAATTAAGTTTGCTCTTTTATGGAATCCTACTTGAACTTTACCACCTGCTTGCCTTGTGAATTGTATGTAGGAGGATGAATTTGTTGAATTTGTTGAATTTGTTGGGTTGAATTTGTTGCATTCACTGAAGCTTTCTCATGGCAATATCTTGGCCATATGCAAAGCTGGTTCTGTTATAAGCATATGAAATTCTAAATTAGTAAACTAATTCTTAAAAATTTTGTGTTGGTTGGGTTGCTTTATATTAATATGTTGACGCAAGGCACTATATCAATAACTCCTTGAATTATATATCTCATTATTTCTTTACATTGTCTTTTATGGGAAAATATCATATGCTAAAACCAAAGAATCACATAAAAAACATTGAAATGTTCCATAGATATGTACATTATTAAATAAACTTGTCCTTAACATGTACTTCTAACTAAATATCACTTGGTTTTTTCTGTCTCTATATTTGTGCACTTTGTGACAAGCCACAAGCATCTTTTTGTTATTTGGATAAAAACTAAAGGTTAGAACACCTTTTTCGTCCCTAATGTTCATTGAACTAATGATTTAGTCTCTAAATTTTGGTGTGTTACGATTTAGTTTCTATACTTTAAATTGATAACAATTAAGTTCTTAAATCTTGTTGTTCATTTTTGTTCATTTATGAAATTGTTTGTGTGAGTTTATGATTTTAGTTGAGTTTAGTGGGAAGTTGATAAATACTTTTCTGTCTTACGTTTCTCCCTTTGACCTACAAACTCAAAAAGATTTTAATTCTAAAACCATGAACCATATCTTTGAATTGTTCGAACGGGTGGCATGAGACTTGCTAAAGAATTTTGTCCGTGTGTAAATATGTCTAGAATTTTGCCGTATGCCTTCAAAGAAATCACCATGTGTTTTCAATACAACCTTATATGGAGTCTAGATAAGTTTAGCTTACATGTACCTAAGGTGTACTATTTTTTCATGATTGACAATAACTTTTGTTTCTGTCAAACTCTAAGAATATTTTTCTTGTCAAATTACGTTATTGTGATTGATATATTCCAGTTAAAGTTGGGCTGTTATTTTTCCATGTGGGGCGTGAAATCTTTCAAAGCCTTTTTGTGGGAAATCTACTTTGCAGTCACCGTAACCATTTATGGCTTGATACTACTTGCGCTTCTTGTAGAAAATTTGCAGGTCAGAAGTTAAGTTTACTTCAAACTCGTTGAGCTTAATGAACAAGTGATGCTTCAAAGAAACTTGGGAAAAGGTTTGCTTCGGGGGCCTTTGTGGTTAAGGATTTTCTGTTAAGAGAAACATGTCTTTCTTTTCTAATATAGTGCCTTTGGGAAACTTGTTTTATGATTTGAAATGCATTTAGGGGCCAGGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGCCATGTTCAGGCAGAGACAAATTTCCACTACATGAGGTACGAAAATTAATATCTTGTTTTGTGACTGCATCATTGATTCCATTCTCTTTTGTCTAAATTTCAAGCATTTCACTGATATTAGTTGGTTCGTTCTACAACAATCATTTTCTTAAAATGAACAAGCTTCCTGTTTAGGCATCAGTTGGTAAATTCTACCAAAAGCAATTAATCTTGTTTGATGCATTGTGAGTTCTGTTTTCTTTCGTAAGAAAATTTCATAGATCCATCGATGATCTACTTTTATTGAGATGCTGCTAGCTTAGTCCTCATTTAGATTTTGACTAGTCGCAAGCTACAAGATCTTGCACATGGTGATGGAATTTTTATTCGGATTATCTTTGTTGCAATTTTTTTTATGAGATTGACAAATTATTGTTGTTGATTGCTTTTCAAATCCACGAGAACCATGCAAATTTTTTTGGTTTTGGTTTACCTAGTTCAAATTCTATTTATTGTTAAAATTTCCTATTTAAGTACTATTATTGGTGGTTTTTAAAGCCTTCTTATTAGTTTGTCACTTGTTAGTTTTTCATGTTAAAACTAACTTGCTTAGTTTTAAGATATTTGGGGTCTTGTTGTGAATTCCTGAAGTGTTGTGAGACTGTAGTTGGGTGATTTTTTTCATATAGAAGTGTGTTTCTCTTGTTTAACAGGTTTAAAAATTTTGGGTTAGTCATATGTATGTCGTTATGCTGTCGAAATTTCTAGAGCATCCGGTTAGAATTACGATAGATGTTTTAGTAATGTCTCTAGGCTAAGTATAGAAACCTAGAGCATTACAGGTTCTCTGAACGGGTTAAACTTGATATCTTGAAGTTTGTAAGCTTTTGGAGTTTATTGGGTTTTCTAACAATTTTTTCGATAGTCATCGAGATTGGTTTTTGTTTTTTGTGTATTTTATTGTTAACTAAATTTGTTTTTCTTAGATTATTCAAAGTTGTTGGACATATGTTTGTTATGTGAGTTCTTTTTTTGGCGTTGTATCGAACCTAATTAGAATTTGTTTTTCTTAGGTTCTTCAAGTTTGATGTACGAGCAAGATTATGGTGACAGGAATGAAAGCGGCATGTATGAGAATTTTTGTTTTTTAGTGTAAGTGTAGACTTTTAATCATAGGTGTTTAGTAATTTTA

mRNA sequence

GTTCCATTCGCTTGGTGAGCTTGATGAGGTGAAGAGGAGCTGTAGAAAAAGGCTTAATGGGCACAATCGGCGTAGGAGGAAGCCTCAACCTGAATCCTTGTTTATGAGTTCAAGGGATTTTCTCTCAAATTGCAATGGGGGCTGAGCTGATGAACAAATATGGGATCAATGTATCCAAGGGTGTTGTTGTTTCTTCTGTCGATGAAGCAAAAAACGCAGTCCAGACTGCTTTTCCTGATGCGAAAGAGTTGGTCATTAAAAGTCAAATTTTAGCTGGTGGAAAAGGTTTGGGGACATTCAAAAGTGGCTTAAAGGCTGGAGTTCACATTGTTAAGGTGGACCAGGTTGAAGAGTATGCTGGAAAGATGCTTGGGCAGATACTTGTCACTAAACAAACTGGTCCACAGGGCAAAGTTGTCAGCAAGCTGGATGTTTCAAGGATCGGACTGATGTACAATGTCTGCATGGGTGACAAAAGGTTTTGAATCCTGAACTTGCCAAAGGTCCATGGTCTAAAGAGAAAATTTGCAGGTCAGAAGTTAAGTTTACTTCAAACTCGTTGAGCTTAATGAACAAGTGATGCTTCAAAGAAACTTGGGAAAAGGGGCCAGGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGCCATGTTCAGGCAGAGACAAATTTCCACTACATGAGGTTCTTCAAGTTTGATGTACGAGCAAGATTATGGTGACAGGAATGAAAGCGGCATGTATGAGAATTTTTGTTTTTTAGTGTAAGTGTAGACTTTTAATCATAGGTGTTTAGTAATTTTA

Coding sequence (CDS)

ATGGGGGCTGAGCTGATGAACAAATATGGGATCAATGTATCCAAGGGTGTTGTTGTTTCTTCTGTCGATGAAGCAAAAAACGCAGTCCAGACTGCTTTTCCTGATGCGAAAGAGTTGGTCATTAAAAGTCAAATTTTAGCTGGTGGAAAAGGTTTGGGGACATTCAAAAGTGGCTTAAAGGCTGGAGTTCACATTGTTAAGGTGGACCAGGTTGAAGAGTATGCTGGAAAGATGCTTGGGCAGATACTTGTCACTAAACAAACTGGTCCACAGGGCAAAGTTGTCAGCAAGCTGGATGTTTCAAGGATCGGACTGATGTACAATGTCTGCATGGGTGACAAAAGGTTTTGA

Protein sequence

MGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKLDVSRIGLMYNVCMGDKRF
Homology
[Close]
BLAST of Lcy11g015260 vs. ExPASy Swiss-Prot
Match: O82662 (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g20420 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.4e-35
Identity = 73/97 (75.26%), Postives = 83/97 (85.57%), Query Frame = 0 

Query: 2   GAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKA 61
           GAELM KYG+NV KGV  SS++E K A+Q  FP+  ELV+KSQILAGG+GLGTFKSGLK 
Sbjct: 34  GAELMGKYGVNVPKGVAASSLEEVKKAIQDVFPNESELVVKSQILAGGRGLGTFKSGLKG 93

Query: 62  GVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKL 99
           GVHIVK D+ EE AGKMLGQ+LVTKQTGPQGKVVSK+
Sbjct: 94  GVHIVKRDEAEEIAGKMLGQVLVTKQTGPQGKVVSKV 130

[Close]
BLAST of Lcy11g015260 vs. ExPASy Swiss-Prot
Match: Q84LB6 (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Solanum lycopersicum OX=4081 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.0e-33
Identity = 69/97 (71.13%), Postives = 82/97 (84.54%), Query Frame = 0 

Query: 2   GAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKA 61
           GAELM+KYGINV KGV V+S+DE K A+Q  FP+  E+V+KSQ+LAGG+GLGTFK+G + 
Sbjct: 31  GAELMSKYGINVPKGVAVASLDEVKKAIQDVFPNQSEVVVKSQVLAGGRGLGTFKNGFQG 90

Query: 62  GVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKL 99
           GVHIVK DQ E+ A KMLGQILVTKQTG QGKVVSK+
Sbjct: 91  GVHIVKADQAEDIASKMLGQILVTKQTGAQGKVVSKV 127

[Close]
BLAST of Lcy11g015260 vs. ExPASy Swiss-Prot
Match: Q6K9N6 (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0621700 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.5e-32
Identity = 67/97 (69.07%), Postives = 79/97 (81.44%), Query Frame = 0 

Query: 2   GAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKA 61
           GAELM KYGINV +G    SV+E KN ++  FP  KE+V+KSQILAGG+GLGTFKSGL+ 
Sbjct: 35  GAELMGKYGINVPRGAAAGSVEEVKNTLKNVFPSEKEIVVKSQILAGGRGLGTFKSGLQG 94

Query: 62  GVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKL 99
           GVHIVK ++ E  A KMLGQILVTKQTGPQGK+VSK+
Sbjct: 95  GVHIVKAEEAESLAAKMLGQILVTKQTGPQGKIVSKV 131

[Close]
BLAST of Lcy11g015260 vs. ExPASy Swiss-Prot
Match: B2UMH5 (Succinate--CoA ligase [ADP-forming] subunit beta OS=Akkermansia muciniphila (strain ATCC BAA-835 / DSM 22959 / JCM 33894 / BCRC 81048 / CCUG 64013 / CIP 107961 / Muc) OX=349741 GN=sucC PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.3e-19
Identity = 48/99 (48.48%), Postives = 68/99 (68.69%), Query Frame = 0 

Query: 4   ELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGV 63
           +L  ++G+   KG+  S+  EA    +       + V+K+Q+ AGG+G GTFK+G K GV
Sbjct: 10  QLFERFGVATPKGIAASTAQEAAQTARNM--GLSQYVVKAQVHAGGRGKGTFKNGFKGGV 69

Query: 64  HIVK-VDQVEEYAGKMLGQILVTKQTGPQGKVVSKLDVS 102
           H+VK V++VEE AGKML Q+LVTKQTG  GK+VSK+ V+
Sbjct: 70  HVVKSVEEVEEVAGKMLNQVLVTKQTGEAGKLVSKIMVA 106

[Close]
BLAST of Lcy11g015260 vs. ExPASy Swiss-Prot
Match: A0RPE8 (Succinate--CoA ligase [ADP-forming] subunit beta OS=Campylobacter fetus subsp. fetus (strain 82-40) OX=360106 GN=sucC PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-15
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = 0 

Query: 4   ELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGV 63
           EL+  +GINV+ G++V SVD+A NA +          +K+QI AGG+GLG        GV
Sbjct: 10  ELLRDFGINVADGIMVVSVDDALNAAKKL--GGSVWAVKAQIHAGGRGLG-------GGV 69

Query: 64  HIVK-VDQVEEYAGKMLGQILVTKQTGPQGKVVSKLDVSR 103
            I K +D+V+EYA K+LG  LVTKQTGP+GK+V KL + +
Sbjct: 70  KIAKSLDEVKEYASKILGMTLVTKQTGPEGKLVKKLYIEK 100

[Close]
BLAST of Lcy11g015260 vs. ExPASy TrEMBL
Match: A0A6J1KTS5 (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111498139 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.1e-41
Identity = 89/97 (91.75%), Postives = 94/97 (96.91%), Query Frame = 0 

Query: 2   GAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKA 61
           GAELMNKYGINV KG+ VSSVDEAKNAVQTAFPDAKELV+KSQILAGG+GLGTFKSGLK 
Sbjct: 35  GAELMNKYGINVPKGIAVSSVDEAKNAVQTAFPDAKELVVKSQILAGGRGLGTFKSGLKG 94

Query: 62  GVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKL 99
           GVHIVKVDQVE+YAGKMLGQILVTKQTGPQGKVVSK+
Sbjct: 95  GVHIVKVDQVEDYAGKMLGQILVTKQTGPQGKVVSKV 131

[Close]
BLAST of Lcy11g015260 vs. ExPASy TrEMBL
Match: A0A6J1H5Q5 (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111460795 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.1e-41
Identity = 89/97 (91.75%), Postives = 94/97 (96.91%), Query Frame = 0 

Query: 2   GAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKA 61
           GAELMNKYGINV KG+ VSSVDEAKNAVQTAFPDAKELV+KSQILAGG+GLGTFKSGLK 
Sbjct: 35  GAELMNKYGINVPKGIAVSSVDEAKNAVQTAFPDAKELVVKSQILAGGRGLGTFKSGLKG 94

Query: 62  GVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKL 99
           GVHIVKVDQVE+YAGKMLGQILVTKQTGPQGKVVSK+
Sbjct: 95  GVHIVKVDQVEDYAGKMLGQILVTKQTGPQGKVVSKV 131

[Close]
BLAST of Lcy11g015260 vs. ExPASy TrEMBL
Match: A0A6J1DTC6 (Succinate-CoA ligase subunit beta OS=Momordica charantia OX=3673 GN=LOC111024197 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 7.6e-40
Identity = 87/97 (89.69%), Postives = 94/97 (96.91%), Query Frame = 0 

Query: 2   GAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKA 61
           G+ELM+KYGINV KGV VSSVDEAKNAV+TAFPDAKELV+KSQILAGG+GLGTFKSGLK 
Sbjct: 35  GSELMSKYGINVPKGVAVSSVDEAKNAVRTAFPDAKELVVKSQILAGGRGLGTFKSGLKG 94

Query: 62  GVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKL 99
           GVHIVKVDQVEE+AGKMLGQILVTKQTGPQGKVVSK+
Sbjct: 95  GVHIVKVDQVEEFAGKMLGQILVTKQTGPQGKVVSKV 131

[Close]
BLAST of Lcy11g015260 vs. ExPASy TrEMBL
Match: A0A6J1DWQ4 (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111024197 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 7.6e-40
Identity = 87/97 (89.69%), Postives = 94/97 (96.91%), Query Frame = 0 

Query: 2   GAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKA 61
           G+ELM+KYGINV KGV VSSVDEAKNAV+TAFPDAKELV+KSQILAGG+GLGTFKSGLK 
Sbjct: 35  GSELMSKYGINVPKGVAVSSVDEAKNAVRTAFPDAKELVVKSQILAGGRGLGTFKSGLKG 94

Query: 62  GVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKL 99
           GVHIVKVDQVEE+AGKMLGQILVTKQTGPQGKVVSK+
Sbjct: 95  GVHIVKVDQVEEFAGKMLGQILVTKQTGPQGKVVSKV 131

[Close]
BLAST of Lcy11g015260 vs. ExPASy TrEMBL
Match: A0A5D3DLZ9 (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001650 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.2e-39
Identity = 91/118 (77.12%), Postives = 100/118 (84.75%), Query Frame = 0 

Query: 2   GAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKA 61
           GAELM+KYGINV KG+ VSSVDE KNAV+TAFPDAKELV+KSQILAGG+GLGTFKSGLK 
Sbjct: 35  GAELMSKYGINVPKGLAVSSVDEVKNAVKTAFPDAKELVVKSQILAGGRGLGTFKSGLKG 94

Query: 62  GVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKL----DVSRIGLMYNVCMGDKR 116
           GVHIVKVDQVEE AGKMLGQILVTKQTGPQGKVVSK+     +S I  MY     D++
Sbjct: 95  GVHIVKVDQVEEIAGKMLGQILVTKQTGPQGKVVSKVYLCEKLSLINEMYFAITLDRK 152

[Close]
BLAST of Lcy11g015260 vs. NCBI nr
Match: XP_022959857.1 (succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Cucurbita moschata] >XP_023513973.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.6 bits (449), Expect = 6.4e-41
Identity = 89/97 (91.75%), Postives = 94/97 (96.91%), Query Frame = 0 

Query: 2   GAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKA 61
           GAELMNKYGINV KG+ VSSVDEAKNAVQTAFPDAKELV+KSQILAGG+GLGTFKSGLK 
Sbjct: 35  GAELMNKYGINVPKGIAVSSVDEAKNAVQTAFPDAKELVVKSQILAGGRGLGTFKSGLKG 94

Query: 62  GVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKL 99
           GVHIVKVDQVE+YAGKMLGQILVTKQTGPQGKVVSK+
Sbjct: 95  GVHIVKVDQVEDYAGKMLGQILVTKQTGPQGKVVSKV 131

[Close]
BLAST of Lcy11g015260 vs. NCBI nr
Match: XP_023005021.1 (succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Cucurbita maxima] >KAG6592839.1 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025247.1 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.6 bits (449), Expect = 6.4e-41
Identity = 89/97 (91.75%), Postives = 94/97 (96.91%), Query Frame = 0 

Query: 2   GAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKA 61
           GAELMNKYGINV KG+ VSSVDEAKNAVQTAFPDAKELV+KSQILAGG+GLGTFKSGLK 
Sbjct: 35  GAELMNKYGINVPKGIAVSSVDEAKNAVQTAFPDAKELVVKSQILAGGRGLGTFKSGLKG 94

Query: 62  GVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKL 99
           GVHIVKVDQVE+YAGKMLGQILVTKQTGPQGKVVSK+
Sbjct: 95  GVHIVKVDQVEDYAGKMLGQILVTKQTGPQGKVVSKV 131

[Close]
BLAST of Lcy11g015260 vs. NCBI nr
Match: XP_022157524.1 (succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [Momordica charantia])

HSP 1 Score: 172.9 bits (437), Expect = 1.6e-39
Identity = 87/97 (89.69%), Postives = 94/97 (96.91%), Query Frame = 0 

Query: 2   GAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKA 61
           G+ELM+KYGINV KGV VSSVDEAKNAV+TAFPDAKELV+KSQILAGG+GLGTFKSGLK 
Sbjct: 35  GSELMSKYGINVPKGVAVSSVDEAKNAVRTAFPDAKELVVKSQILAGGRGLGTFKSGLKG 94

Query: 62  GVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKL 99
           GVHIVKVDQVEE+AGKMLGQILVTKQTGPQGKVVSK+
Sbjct: 95  GVHIVKVDQVEEFAGKMLGQILVTKQTGPQGKVVSKV 131

[Close]
BLAST of Lcy11g015260 vs. NCBI nr
Match: XP_022157525.1 (succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X2 [Momordica charantia])

HSP 1 Score: 172.9 bits (437), Expect = 1.6e-39
Identity = 87/97 (89.69%), Postives = 94/97 (96.91%), Query Frame = 0 

Query: 2   GAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKA 61
           G+ELM+KYGINV KGV VSSVDEAKNAV+TAFPDAKELV+KSQILAGG+GLGTFKSGLK 
Sbjct: 35  GSELMSKYGINVPKGVAVSSVDEAKNAVRTAFPDAKELVVKSQILAGGRGLGTFKSGLKG 94

Query: 62  GVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKL 99
           GVHIVKVDQVEE+AGKMLGQILVTKQTGPQGKVVSK+
Sbjct: 95  GVHIVKVDQVEEFAGKMLGQILVTKQTGPQGKVVSKV 131

[Close]
BLAST of Lcy11g015260 vs. NCBI nr
Match: XP_038876130.1 (succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Benincasa hispida])

HSP 1 Score: 172.9 bits (437), Expect = 1.6e-39
Identity = 91/118 (77.12%), Postives = 100/118 (84.75%), Query Frame = 0 

Query: 2   GAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKA 61
           GAELMNKYGINV KG+ VSSV+EAKNA+QT FPDAKELV+KSQILAGG+GLGTFKSGLK 
Sbjct: 35  GAELMNKYGINVPKGIAVSSVEEAKNAMQTVFPDAKELVVKSQILAGGRGLGTFKSGLKG 94

Query: 62  GVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKL----DVSRIGLMYNVCMGDKR 116
           GVHIVKVDQVEE AGKMLGQILVTKQTGPQGKVVSK+     +S I  MY     D++
Sbjct: 95  GVHIVKVDQVEEIAGKMLGQILVTKQTGPQGKVVSKVYLCEKLSLINEMYFAITLDRK 152

[Close]
BLAST of Lcy11g015260 vs. TAIR 10
Match: AT2G20420.1 (ATP citrate lyase (ACL) family protein )

HSP 1 Score: 149.4 bits (376), Expect = 1.7e-36
Identity = 73/97 (75.26%), Postives = 83/97 (85.57%), Query Frame = 0 

Query: 2   GAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKA 61
           GAELM KYG+NV KGV  SS++E K A+Q  FP+  ELV+KSQILAGG+GLGTFKSGLK 
Sbjct: 34  GAELMGKYGVNVPKGVAASSLEEVKKAIQDVFPNESELVVKSQILAGGRGLGTFKSGLKG 93

Query: 62  GVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKL 99
           GVHIVK D+ EE AGKMLGQ+LVTKQTGPQGKVVSK+
Sbjct: 94  GVHIVKRDEAEEIAGKMLGQVLVTKQTGPQGKVVSKV 130

The following BLAST results are available for this feature:
BLAST of Lcy11g015260 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O826622.4e-3575.26Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Arabidopsis t... [more]
Q84LB63.0e-3371.13Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Solanum lycop... [more]
Q6K9N61.5e-3269.07Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Oryza sativa ... [more]
B2UMH59.3e-1948.48Succinate--CoA ligase [ADP-forming] subunit beta OS=Akkermansia muciniphila (str... [more]
A0RPE82.8e-1548.00Succinate--CoA ligase [ADP-forming] subunit beta OS=Campylobacter fetus subsp. f... [more]
BLAST of Lcy11g015260 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KTS53.1e-4191.75Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Cucurbita max... [more]
A0A6J1H5Q53.1e-4191.75Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Cucurbita mos... [more]
A0A6J1DTC67.6e-4089.69Succinate-CoA ligase subunit beta OS=Momordica charantia OX=3673 GN=LOC111024197... [more]
A0A6J1DWQ47.6e-4089.69Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Momordica cha... [more]
A0A5D3DLZ92.2e-3977.12Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Cucumis melo ... [more]
BLAST of Lcy11g015260 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022959857.16.4e-4191.75succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Cucurbita mosch... [more]
XP_023005021.16.4e-4191.75succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Cucurbita maxim... [more]
XP_022157524.11.6e-3989.69succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [Momo... [more]
XP_022157525.11.6e-3989.69succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X2 [Momo... [more]
XP_038876130.11.6e-3977.12succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Benincasa hispi... [more]
BLAST of Lcy11g015260 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G20420.11.7e-3675.26ATP citrate lyase (ACL) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013815ATP-grasp fold, subdomain 1GENE3D3.30.1490.20coord: 15..103
e-value: 1.4E-25
score: 91.0
IPR013650ATP-grasp fold, succinyl-CoA synthetase-typePFAMPF08442ATP-grasp_2coord: 3..100
e-value: 2.7E-19
score: 69.6
IPR005809Succinate--CoA synthetase, beta subunitPANTHERPTHR11815SUCCINYL-COA SYNTHETASE BETA CHAINcoord: 2..100
NoneNo IPR availablePANTHERPTHR11815:SF18SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT BETA, MITOCHONDRIALcoord: 2..100
NoneNo IPR availableSUPERFAMILY56059Glutathione synthetase ATP-binding domain-likecoord: 3..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g015260.1Lcy11g015260.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006104 succinyl-CoA metabolic process
biological_process GO:0006099 tricarboxylic acid cycle
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0042709 succinate-CoA ligase complex
molecular_function GO:0005524 ATP binding
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0004775 succinate-CoA ligase (ADP-forming) activity
molecular_function GO:0004776 succinate-CoA ligase (GDP-forming) activity