Lcy11g014990 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g014990
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr11: 32667741 .. 32668193 (+)
RNA-Seq Expression	Lcy11g014990
Synteny	Lcy11g014990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCAATTCATTTTTCCATCTAATTACTTCCTCAACGCCATGGGAGGCAACACCCGACAGAAAAAACCTCATTCTTCCTTCTCAATCTTTAGCTTTTTCAAATCCAAAAAGGGCAGAAAAGGAGATGATGATGGTTCTTGGGACGAGTTGTCAACTTCGAGCAAGGTGTGGCCGAGCGATGAGGACAAAATTCATCGTTCGGTTGCTGAACCTGGTATTGATAGAAAAGCAAAAGATTACATTGACAAGATCTATCGGAACCGTGTTTTAGAAACCGAGCGCCGCACTGTCACTATTCCTCCTCCTGGAACCAAACTCGAATGATTTGTGCATATATCTCTATTTTTATTATTGTTATTATTTTGTGCCTTAGTATCCTCTATATTCTAATTTGTAAATAGGGTATTAGTTCATTAAATAATGTAATTTGTAGTTAAGGACTTATTGAAATTC

mRNA sequence

ATTCAATTCATTTTTCCATCTAATTACTTCCTCAACGCCATGGGAGGCAACACCCGACAGAAAAAACCTCATTCTTCCTTCTCAATCTTTAGCTTTTTCAAATCCAAAAAGGGCAGAAAAGGAGATGATGATGGTTCTTGGGACGAGTTGTCAACTTCGAGCAAGGTGTGGCCGAGCGATGAGGACAAAATTCATCGTTCGGTTGCTGAACCTGGTATTGATAGAAAAGCAAAAGATTACATTGACAAGATCTATCGGAACCGTGTTTTAGAAACCGAGCGCCGCACTGTCACTATTCCTCCTCCTGGAACCAAACTCGAATGATTTGTGCATATATCTCTATTTTTATTATTGTTATTATTTTGTGCCTTAGTATCCTCTATATTCTAATTTGTAAATAGGGTATTAGTTCATTAAATAATGTAATTTGTAGTTAAGGACTTATTGAAATTC

Coding sequence (CDS)

ATGGGAGGCAACACCCGACAGAAAAAACCTCATTCTTCCTTCTCAATCTTTAGCTTTTTCAAATCCAAAAAGGGCAGAAAAGGAGATGATGATGGTTCTTGGGACGAGTTGTCAACTTCGAGCAAGGTGTGGCCGAGCGATGAGGACAAAATTCATCGTTCGGTTGCTGAACCTGGTATTGATAGAAAAGCAAAAGATTACATTGACAAGATCTATCGGAACCGTGTTTTAGAAACCGAGCGCCGCACTGTCACTATTCCTCCTCCTGGAACCAAACTCGAATGA

Protein sequence

MGGNTRQKKPHSSFSIFSFFKSKKGRKGDDDGSWDELSTSSKVWPSDEDKIHRSVAEPGIDRKAKDYIDKIYRNRVLETERRTVTIPPPGTKLE

Homology

[Close]

BLAST of Lcy11g014990 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.9e-29
Identity = 71/96 (73.96%), Postives = 79/96 (82.29%), Query Frame = 0


Query: 1  MGGNTRQKKPHSSFSIFSFFKSKKGRKGDD---DGS-WDELSTSSKVWPSDEDKIHRSVA 60
          MGGN RQKK HSSFSIFSFFKS++GRKGD+    GS  DE+  S KVWPSDEDK H  VA
Sbjct: 1  MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDKIYRNRVLETERRTVTIPPPGTK 93
          EPGIDRKAKDYID+IYRNRV E+ER+T+TI P GTK
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTK 96

[Close]

BLAST of Lcy11g014990 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.3e-29
Identity = 72/96 (75.00%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 1  MGGNTRQKKPHSSFSIFSFFKSKKGRKG---DDDGSW-DELSTSSKVWPSDEDKIHRSVA 60
          MGGN RQKK HSSFSIFSFFKSK+GRKG   D  G+W DE+  S+KVWPSDEDK H  +A
Sbjct: 1  MGGN-RQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIA 60

Query: 61 EPGIDRKAKDYIDKIYRNRVLETERRTVTIPPPGTK 93
          EPGIDRKAKDYID+IYRNRV E+ER+TVTI P GTK
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTK 95

[Close]

BLAST of Lcy11g014990 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.4e-28
Identity = 72/96 (75.00%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 1  MGGNTRQKKPHSSFSIFSFFKSKKGRKG---DDDGSW-DELSTSSKVWPSDEDKIHRSVA 60
          MGGN RQKK HSSFSIFSFFKS++GRKG   D  G+W DE+  S+KVWPSDEDK H  VA
Sbjct: 1  MGGN-RQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDKIYRNRVLETERRTVTIPPPGTK 93
          EPGIDRKAKDYID+IYRNRV E+ER+TVTI P GTK
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTK 95

[Close]

BLAST of Lcy11g014990 vs. ExPASy TrEMBL
Match: A0A0A0K8W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.1e-28
Identity = 68/93 (73.12%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1  MGGNTRQKKPHSSFSIFSFFKSKKGRKGD---DDGSWDELSTSSKVWPSDEDKIHRSVAE 60
          MGG+ RQKK HSSFSIFSFFKSK+GRKGD      +W+++ +SSKVWPSDEDK +R VAE
Sbjct: 1  MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAE 60

Query: 61 PGIDRKAKDYIDKIYRNRVLETERRTVTIPPPG 91
          PGIDRKAKDYID+IY+NRV ETER+TVTI P G
Sbjct: 61 PGIDRKAKDYIDRIYKNRVFETERQTVTIHPNG 93

[Close]

BLAST of Lcy11g014990 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.1e-28
Identity = 68/96 (70.83%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 1  MGGNTRQKKPHSSFSIFSFFKSKKGRKGD----DDGSWDELSTSSKVWPSDEDKIHRSVA 60
          MGGN RQKK H+SFSIFSFFKS++GRKGD         DE+  S KVWPSDEDK H  VA
Sbjct: 1  MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDKIYRNRVLETERRTVTIPPPGTK 93
          EPGIDRKAKDYID+IYRNRV E+ER+TVTI P G K
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIK 96

[Close]

BLAST of Lcy11g014990 vs. NCBI nr
Match: KAG6592314.1 (hypothetical protein SDJN03_14660, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.8 bits (364), Expect = 3.7e-31
Identity = 71/97 (73.20%), Postives = 81/97 (83.51%), Query Frame = 0


Query: 1  MGGNTRQKKPHSSFSIFSFFKSKKGRK---GDDDGSWDELSTSSKVWPSDEDKIHRSVAE 60
          MGGN R KK HSSFSIF+FFK K+GRK    D  G WDE+  SSKVWPSDEDK+HR VAE
Sbjct: 1  MGGNNRSKKTHSSFSIFNFFKFKRGRKEDHSDHSGCWDEMPRSSKVWPSDEDKMHRWVAE 60

Query: 61 PGIDRKAKDYIDKIYRNRVLETERRTVTIPPPGTKLE 95
          PGIDRKAKDYID+IYRNRVLE+ER+T+T+P  GTKL+
Sbjct: 61 PGIDRKAKDYIDRIYRNRVLESERQTITLPASGTKLD 97

[Close]

BLAST of Lcy11g014990 vs. NCBI nr
Match: KAG6592308.1 (hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.9 bits (359), Expect = 1.4e-30
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = 0


Query: 1  MGGNTRQKKPHSSFSIFSFFKSKKGRKG---DDDGSWDELSTSSKVWPSDEDKIHRSVAE 60
          MGGN R KK HSSFSIF+FFKS++ RK    D  G WDE+  SSK+WPSDEDKIHR VAE
Sbjct: 1  MGGNNRSKKAHSSFSIFNFFKSRRSRKEDHCDHSGGWDEIPRSSKIWPSDEDKIHRWVAE 60

Query: 61 PGIDRKAKDYIDKIYRNRVLETERRTVTIPPPGTKLE 95
          PGIDRKAKDYID+IYRNRV E+ER+TVT+P  GTKL+
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTLPASGTKLD 97

[Close]

BLAST of Lcy11g014990 vs. NCBI nr
Match: KAG6592316.1 (hypothetical protein SDJN03_14662, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.1 bits (357), Expect = 2.4e-30
Identity = 70/97 (72.16%), Postives = 81/97 (83.51%), Query Frame = 0


Query: 1  MGGNTRQKKPHSSFSIFSFFKSKKGRKG---DDDGSWDELSTSSKVWPSDEDKIHRSVAE 60
          MGGN R KK HSSFSIF+FFK ++GRK    D  G WDE+  S+KVWPSDEDK+HR VAE
Sbjct: 1  MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSGCWDEMPRSNKVWPSDEDKMHRWVAE 60

Query: 61 PGIDRKAKDYIDKIYRNRVLETERRTVTIPPPGTKLE 95
          PGIDRKAKDYID+IYRNRVLE+ER+TVT+P  GTKL+
Sbjct: 61 PGIDRKAKDYIDRIYRNRVLESERQTVTLPASGTKLD 97

[Close]

BLAST of Lcy11g014990 vs. NCBI nr
Match: KAG6592311.1 (hypothetical protein SDJN03_14657, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-29
Identity = 70/97 (72.16%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 1  MGGNTRQKKPHSSFSIFSFFKSKKGRKG---DDDGSWDELSTSSKVWPSDEDKIHRSVAE 60
          MGGN R KK HSSFSIF+FFK +KGRK    D  G W+E+  S KVWPSDEDK HR VAE
Sbjct: 1  MGGNNRSKKSHSSFSIFNFFKFRKGRKEDHYDHGGYWNEMPRSGKVWPSDEDKTHRWVAE 60

Query: 61 PGIDRKAKDYIDKIYRNRVLETERRTVTIPPPGTKLE 95
          PGIDRKAKDYIDKIYRNR+ E+ER+TVT+P  GTKLE
Sbjct: 61 PGIDRKAKDYIDKIYRNRIFESERQTVTLPANGTKLE 97

[Close]

BLAST of Lcy11g014990 vs. NCBI nr
Match: KAG6592313.1 (hypothetical protein SDJN03_14659, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 138.3 bits (347), Expect = 3.5e-29
Identity = 69/97 (71.13%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 1  MGGNTRQKKPHSSFSIFSFFKSKKGRKG---DDDGSWDELSTSSKVWPSDEDKIHRSVAE 60
          MGGN R KK HSSFSIF+FFK +KGRK    D  G W+E+  S KVWPSDEDK HR VAE
Sbjct: 1  MGGNNRSKKSHSSFSIFNFFKFRKGRKEDHYDHGGYWNEMPRSGKVWPSDEDKTHRWVAE 60

Query: 61 PGIDRKAKDYIDKIYRNRVLETERRTVTIPPPGTKLE 95
          PGIDRKAKDYIDKIYRNR+ E+ER+TVT+P  GTKL+
Sbjct: 61 PGIDRKAKDYIDKIYRNRIFESERQTVTLPANGTKLD 97

[Close]

BLAST of Lcy11g014990 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 9.8e-14
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 0


Query: 1  MGGNTRQKKPHSS--FSIFSFFKSKKGRKGDDDGSWDELSTSSKVWPSDEDKIHRSVAEP 60
          MGG  R    HSS  FS+FSFFK+++  + + DGSWD+   + K   SDEDK +  VAEP
Sbjct: 1  MGGKNRS---HSSKRFSLFSFFKTRRSHRVEADGSWDDFGYTRKAMASDEDKRY-WVAEP 60

Query: 61 GIDRKAKDYIDKIYRNRVLETERRTVT 86
          GIDRKA  +I K +  RV E+ER+T++
Sbjct: 61 GIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of Lcy11g014990 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 7.3e-09
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 31 DGSWDELSTSSKVWPSDEDKIHRSVAEPGIDRKAKDYIDKIYRNRVLETERRTVTIPP 89
          D SWD++  + K W SDEDK +  VAEPGIDRKA  +I K + +RV E+ER+  T+PP
Sbjct: 14 DASWDDVIYTRKAWASDEDKRY-WVAEPGIDRKASAFIAKFHASRVSESERQ--TLPP 68

[Close]

BLAST of Lcy11g014990 vs. TAIR 10
Match: AT1G48325.1 (Expressed protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.1e-04
Identity = 27/83 (32.53%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 1  MGGNTRQKKPHSSFSIFSFFKSKKGRKGDDDGSWDE---LSTSSKVWPSDEDKIHRSVAE 60
          MGG+ R++K  SSFS+    KS   R   +  +W+E   ++   ++  +D+D    ++AE
Sbjct: 3  MGGHGRRRKSSSSFSV---VKSLFARCSKEKDNWNEERMINVRPRIMTTDDDGCSWTIAE 62

Query: 61 PGIDRKAKDYIDKIYRNRVLETE 81
          P IDR+A  +I K +   + +TE
Sbjct: 63 PCIDRRATAFIAKFHETPIQDTE 82

The following BLAST results are available for this feature:

BLAST of Lcy11g014990 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g014990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SWT9	4.9e-29	73.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K7Y2	8.3e-29	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1	1.4e-28	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K8W0	4.1e-28	73.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1	[more]
A0A0A0KAK6	7.1e-28	70.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]

BLAST of Lcy11g014990 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592314.1	3.7e-31	73.20	hypothetical protein SDJN03_14660, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6592308.1	1.4e-30	72.16	hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6592316.1	2.4e-30	72.16	hypothetical protein SDJN03_14662, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6592311.1	1.6e-29	72.16	hypothetical protein SDJN03_14657, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6592313.1	3.5e-29	71.13	hypothetical protein SDJN03_14659, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lcy11g014990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	9.8e-14	49.43	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	7.3e-09	53.45	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G48325.1	1.1e-04	32.53	Expressed protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..50
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..85
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g014990.1	Lcy11g014990.1	mRNA