Lcy11g014210 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g014210
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	40S ribosomal protein S13
Location	Chr11: 27452348 .. 27453469 (+)
RNA-Seq Expression	Lcy11g014210
Synteny	Lcy11g014210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCTGCCAGCTTCATTCAGGTGGACTTTCCTGAGCATTACCCAATGGAAGCCGGCCCACAGGTTTACACATAATCATCAAATTTTGAGAACGTTTTATTCCATAATCCTTTAGTGGCTGGATTTATTGATTATTATGCATTTGATTGGCTTGTCGATTTATCATTGGTTATATATTTCTGCATCCAACCCCTCTGCATTCTCATATCTACAGCAATGGTCACATTGAATTTCGGACTGGGACTATTCTACTCTTTAATTCAAGTGTTATACGTTTTATGCAAAATCTAATTTCTTATCATCCCATTTATGATTTCTCTATGGATGGTAGTGGTTGTTTTGATTTTGTTTGGAACTTTGTGCACCCTTTATGTTTGTTAAAAATGTCTATGAAGAGAGATTATTGAAACCATATCTTTTCTTTTGGGAGACAACCTTTCACCACCATTGGTTATTTATATGAAGGGAGAAAAAAAAATGTCCTTATTTTTTCTTTATGCTTAAACTCAGTAAACTTTTACGTGTGTCTTATCATAAATTATATATTTTTATAATCTAGCAACAGCTAAAGTTCACCAATGGCCTCAGGCTTAACTTATGTATGTGCTCTGATGGCATATTGTATTTGGTTGACAGGTACACCCTAGTGATGTTGTTTTTCATTATCTAGACAATGGGTTTGTAAATATACAAATGTTGTTGCAGTTTCAAGGGTAAACAATTTTCGTGAGAATGCCAAATCTATGCTTGTTGTAGCGTTGTTGGAGAAATTAAAAAATGAATGTTCATATAGTTGATTAGTAAAAGAACTAAATAAAGAGGAATCTAATAGCTAGGAGCTTTGACTCTTCCTCTAGGCTTCCCATTAAGGAGAATTGACTATTTGGTACTTTGGACACAACCATTGATTAGGGTTGCCGAGAAATTGATGGCTTTTCTTTGACCATTCAGGTTGCCGAGAACATTTGCAAATTTGCCGAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTCCGTGATTCTCACGGGATTGCTCAGGTGAAAAGTGTAACTGGGAGCAAGATGTTGCGTATATTGAAGGCTCATGGTGAGCCCCATCTACCCTTTCTCCACTGA

mRNA sequence

ATGAAACCTGCCAGCTTCATTCAGGTGGACTTTCCTGAGCATTACCCAATGGAAGCCGGCCCACAGGTTGCCGAGAACATTTGCAAATTTGCCGAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTCCGTGATTCTCACGGGATTGCTCAGGTGAAAAGTGTAACTGGGAGCAAGATGTTGCGTATATTGAAGGCTCATGGTGAGCCCCATCTACCCTTTCTCCACTGA

Coding sequence (CDS)

ATGAAACCTGCCAGCTTCATTCAGGTGGACTTTCCTGAGCATTACCCAATGGAAGCCGGCCCACAGGTTGCCGAGAACATTTGCAAATTTGCCGAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTCCGTGATTCTCACGGGATTGCTCAGGTGAAAAGTGTAACTGGGAGCAAGATGTTGCGTATATTGAAGGCTCATGGTGAGCCCCATCTACCCTTTCTCCACTGA

Protein sequence

MKPASFIQVDFPEHYPMEAGPQVAENICKFAEKGLTPSQIGVILRDSHGIAQVKSVTGSKMLRILKAHGEPHLPFLH

Homology

[Close]

BLAST of Lcy11g014210 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.8e-18
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 23 VAENICKFAEKGLTPSQIGVILRDSHGIAQVKSVTGSKMLRILKAHG-EPHLP 75
          V ENICKFA+KGLTPSQIGVILRDSHGIAQV SVTGSK+LRILKAHG  P +P
Sbjct: 33 VEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIP 85

[Close]

BLAST of Lcy11g014210 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-17
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 23 VAENICKFAEKGLTPSQIGVILRDSHGIAQVKSVTGSKMLRILKAHG-EPHLP 75
          V E ICKFA+KGLTPSQIGVILRDSHGIAQVKSVTGSK+LRILKAHG  P +P
Sbjct: 33 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 85

[Close]

BLAST of Lcy11g014210 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.6e-17
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 17 MEAGPQ-VAENICKFAEKGLTPSQIGVILRDSHGIAQVKSVTGSKMLRILKAHG-EPHLP 75
          ++  PQ V E+ICKFA+KGLTPSQIGVILRDSHGI QVKSVTGSK+LRILKAHG  P +P
Sbjct: 26 LKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIP 85

[Close]

BLAST of Lcy11g014210 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.4e-17
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 23 VAENICKFAEKGLTPSQIGVILRDSHGIAQVKSVTGSKMLRILKAHG-EPHLP 75
          V E+ICKFA+KGLTPSQIGVILRDSHGI QVKSVTGSK+LRILKAHG  P +P
Sbjct: 33 VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIP 85

[Close]

BLAST of Lcy11g014210 vs. ExPASy Swiss-Prot
Match: Q9WVH0 (40S ribosomal protein S13 OS=Cricetulus griseus OX=10029 GN=RPS13 PE=3 SV=3)

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-13
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 19 AGPQVAENICKFAEKGLTPSQIGVILRDSHGIAQVKSVTGSKMLRILKAHG-EPHLP 75
          A   V E I K A+KGLTPSQIGVILRDSHG+AQV+ VTG+K+LRILK+ G  P LP
Sbjct: 29 ASDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLP 85

[Close]

BLAST of Lcy11g014210 vs. ExPASy TrEMBL
Match: A0A2P5YB27 (Ribosomal_S13_N domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA07838 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.6e-17
Identity = 51/74 (68.92%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 3   PASFIQVDF-PEHYPMEAGPQVAENICKFAEKGLTPSQIGVILRDSHGIAQVKSVTGSKM 62
           P   +Q+D+ P  Y   +  +V ENICKFA+KGLTPSQIGVILRDSHGIAQVKSVTGSK+
Sbjct: 49  PPRSLQLDYLPRRYVELSPSKVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKI 108

Query: 63  LRILKAHG-EPHLP 75
           LRILKAHG  P +P
Sbjct: 109 LRILKAHGLAPEIP 122

[Close]

BLAST of Lcy11g014210 vs. ExPASy TrEMBL
Match: A0A022QWM7 (Ribosomal_S13_N domain-containing protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a015623mg PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.8e-17
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 19 AGPQVAENICKFAEKGLTPSQIGVILRDSHGIAQVKSVTGSKMLRILKAHG-EPHLP 75
          + P V ENICKFA+KGLTPSQIGVILRDSHGIAQVKSVTGSK+LRILKAHG  P +P
Sbjct: 29 SSPDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 85

[Close]

BLAST of Lcy11g014210 vs. ExPASy TrEMBL
Match: U5DAN3 (Ribosomal_S13_N domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00069p00029190 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.0e-16
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 19 AGPQVAENICKFAEKGLTPSQIGVILRDSHGIAQVKSVTGSKMLRILKAHG-EPHLP 75
          + P+V ENICKFA+KGLTPSQIGVILRDSHGIAQVKSVTG+K+LRILKAHG  P +P
Sbjct: 29 SSPEVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIP 85

[Close]

BLAST of Lcy11g014210 vs. ExPASy TrEMBL
Match: A0A7J7I501 (Ribosomal_S13_N domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_001084 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.0e-16
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 12  PEHYPMEAGPQVAENICKFAEKGLTPSQIGVILRDSHGIAQVKSVTGSKMLRILKAHG-E 71
           P ++   + P V ENICKFA+KG+TPSQIGVILRDSHGIAQVKSVTGSK+LRILKAHG  
Sbjct: 45  PPNWLKISSPDVEENICKFAKKGMTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA 104

Query: 72  PHLP 75
           P +P
Sbjct: 105 PEIP 108

[Close]

BLAST of Lcy11g014210 vs. ExPASy TrEMBL
Match: F4YFF8 (Ribosomal protein s13 (Fragment) OS=Camellia sinensis OX=4442 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.0e-16
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 12 PEHYPMEAGPQVAENICKFAEKGLTPSQIGVILRDSHGIAQVKSVTGSKMLRILKAHG-E 71
          P ++   + P V ENICKFA+KG+TPSQIGVILRDSHGIAQVKSVTGSK+LRILKAHG  
Sbjct: 22 PPNWLKISSPDVEENICKFAKKGMTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA 81

Query: 72 PHLP 75
          P +P
Sbjct: 82 PEIP 85

[Close]

BLAST of Lcy11g014210 vs. NCBI nr
Match: PPS12785.1 (hypothetical protein GOBAR_AA07838 [Gossypium barbadense])

HSP 1 Score: 98.2 bits (243), Expect = 3.3e-17
Identity = 51/74 (68.92%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 3   PASFIQVDF-PEHYPMEAGPQVAENICKFAEKGLTPSQIGVILRDSHGIAQVKSVTGSKM 62
           P   +Q+D+ P  Y   +  +V ENICKFA+KGLTPSQIGVILRDSHGIAQVKSVTGSK+
Sbjct: 49  PPRSLQLDYLPRRYVELSPSKVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKI 108

Query: 63  LRILKAHG-EPHLP 75
           LRILKAHG  P +P
Sbjct: 109 LRILKAHGLAPEIP 122

[Close]

BLAST of Lcy11g014210 vs. NCBI nr
Match: KAF3778142.1 (40S ribosomal protein S13-2 [Nymphaea thermarum])

HSP 1 Score: 97.1 bits (240), Expect = 7.3e-17
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 22 QVAENICKFAEKGLTPSQIGVILRDSHGIAQVKSVTGSKMLRILKAHGEPHLPF 76
          +V ENICKFA+KGLTPSQIGVILRDSHGIAQVKSVTGSK+LRILKAHG  +LP+
Sbjct: 4  RVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGTSYLPY 57

[Close]

BLAST of Lcy11g014210 vs. NCBI nr
Match: XP_012843594.1 (PREDICTED: 40S ribosomal protein S13-like [Erythranthe guttata] >EYU31984.1 hypothetical protein MIMGU_mgv1a015623mg [Erythranthe guttata])

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-16
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 19 AGPQVAENICKFAEKGLTPSQIGVILRDSHGIAQVKSVTGSKMLRILKAHG-EPHLP 75
          + P V ENICKFA+KGLTPSQIGVILRDSHGIAQVKSVTGSK+LRILKAHG  P +P
Sbjct: 29 SSPDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIP 85

[Close]

BLAST of Lcy11g014210 vs. NCBI nr
Match: XP_042513114.1 (40S ribosomal protein S13-like [Macadamia integrifolia])

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-16
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 19 AGPQVAENICKFAEKGLTPSQIGVILRDSHGIAQVKSVTGSKMLRILKAHG-EPHLP 75
          +GP V +NICKFA+KGLTPSQIGVILRDSHGIAQV+SVTGSK+LRILKAHG  P +P
Sbjct: 29 SGPDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIP 85

[Close]

BLAST of Lcy11g014210 vs. NCBI nr
Match: ERN19290.1 (hypothetical protein AMTR_s00069p00029190 [Amborella trichopoda])

HSP 1 Score: 95.5 bits (236), Expect = 2.1e-16
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 19 AGPQVAENICKFAEKGLTPSQIGVILRDSHGIAQVKSVTGSKMLRILKAHG-EPHLP 75
          + P+V ENICKFA+KGLTPSQIGVILRDSHGIAQVKSVTG+K+LRILKAHG  P +P
Sbjct: 29 SSPEVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIP 85

[Close]

BLAST of Lcy11g014210 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-18
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 17 MEAGPQ-VAENICKFAEKGLTPSQIGVILRDSHGIAQVKSVTGSKMLRILKAHG-EPHLP 75
          ++  PQ V E+ICKFA+KGLTPSQIGVILRDSHGI QVKSVTGSK+LRILKAHG  P +P
Sbjct: 26 LKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIP 85

[Close]

BLAST of Lcy11g014210 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-18
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 23 VAENICKFAEKGLTPSQIGVILRDSHGIAQVKSVTGSKMLRILKAHG-EPHLP 75
          V E+ICKFA+KGLTPSQIGVILRDSHGI QVKSVTGSK+LRILKAHG  P +P
Sbjct: 33 VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIP 85

The following BLAST results are available for this feature:

BLAST of Lcy11g014210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	6.8e-18	84.91	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P46298	1.2e-17	84.91	40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1	[more]
P59223	2.6e-17	76.67	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
P59224	3.4e-17	83.02	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]
Q9WVH0	2.3e-13	68.42	40S ribosomal protein S13 OS=Cricetulus griseus OX=10029 GN=RPS13 PE=3 SV=3	[more]

BLAST of Lcy11g014210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5YB27	1.6e-17	68.92	Ribosomal_S13_N domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOB...	[more]
A0A022QWM7	7.8e-17	82.46	Ribosomal_S13_N domain-containing protein OS=Erythranthe guttata OX=4155 GN=MIMG...	[more]
U5DAN3	1.0e-16	80.70	Ribosomal_S13_N domain-containing protein OS=Amborella trichopoda OX=13333 GN=AM...	[more]
A0A7J7I501	1.0e-16	73.44	Ribosomal_S13_N domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_...	[more]
F4YFF8	1.0e-16	73.44	Ribosomal protein s13 (Fragment) OS=Camellia sinensis OX=4442 PE=2 SV=1	[more]

BLAST of Lcy11g014210 vs. NCBI nr


Match Name	E-value	Identity	Description
PPS12785.1	3.3e-17	68.92	hypothetical protein GOBAR_AA07838 [Gossypium barbadense]	[more]
KAF3778142.1	7.3e-17	85.19	40S ribosomal protein S13-2 [Nymphaea thermarum]	[more]
XP_012843594.1	1.6e-16	82.46	PREDICTED: 40S ribosomal protein S13-like [Erythranthe guttata] >EYU31984.1 hypo...	[more]
XP_042513114.1	1.6e-16	80.70	40S ribosomal protein S13-like [Macadamia integrifolia]	[more]
ERN19290.1	2.1e-16	80.70	hypothetical protein AMTR_s00069p00029190 [Amborella trichopoda]	[more]

BLAST of Lcy11g014210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60770.1	1.8e-18	76.67	Ribosomal protein S13/S15	[more]
AT4G00100.1	2.4e-18	83.02	ribosomal protein S13A	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012606	Ribosomal protein S13/S15, N-terminal	SMART	SM01386	Ribosomal_S13_N_2	coord: 1..50 e-value: 2.0E-4 score: 25.7
IPR012606	Ribosomal protein S13/S15, N-terminal	PFAM	PF08069	Ribosomal_S13_N	coord: 21..50 e-value: 6.2E-12 score: 45.4
None	No IPR available	GENE3D	4.10.860.130		coord: 25..71 e-value: 3.5E-25 score: 89.5
None	No IPR available	PANTHER	PTHR11885:SF24	40S RIBOSOMAL PROTEIN S13	coord: 21..72
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 21..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g014210.1	Lcy11g014210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome