Lcy11g013930 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g013930
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ubiquitin-like
Location	Chr11: 23418900 .. 23420677 (+)
RNA-Seq Expression	Lcy11g013930
Synteny	Lcy11g013930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGACTTTACTATTTCGTCTCTTCTCCACGCCCAATTAGCCGCCATTGCTAGAAAGGTTATTTGCTTGAAGCATTTTTCCAATTGCACTCATCCCTCTTTCTCTTTCTCACTTATTCCTCACATCACTTTTCTCCTTCACATGAGGAATACATTGAAGTCTTCAATCACAATCTCTTGATCCAGGGCTTTCTAAGGTTTTCTCTCTGTTTCCTCGTCATTCTGAAATCTGAATCAATACATTTGCATGTGCTTTTGTTTCTTTTATATAGAGCTTTGCATTGGCAATGTGGTGCGTTTTTTTTTCAATCTTTTCATCGTCGTCTAATTGGAGGATAAGAGGAACATTTGGATTAGGCTAGTTGTTAGGGTTTTGCAGCTTCATTAGATAGAAAAATAGTTGAAAGACTATTGTGACAGATAATTTCTGTAAGGTAACACAGAAATATTGAAGTATGCTAGAGGATCAGTCCCTTTTTACTTTCTTTTTTTTGCTTTTATGATTGTTTGTTGCGCCTATTGAAAGAAAATTTAACATCTTACAGAACCTTCAAATTCTCCAACACTCTGTTTTAGTGTACTCTTTTATCAAATGCCATGATAAATTAGGTGCTTTCAGCATTGGGAGTGGGAAATTAACTGGAGTAAGATAGCTTGTTTTAGTTAATTAATTTGTATAGTTTTAATATTAAGTGATCATTGCAATTTTAATTAGTTTGATTTATTTTCAAGTTTTATTTTCCATGTTCAGAGTGACCATCTACAATGTTTATTTGGTTCTAAGACAATTTCTAGAATACCAATGGGGCAACTTTTTTTTTTTTTCCTAGATAACCATGAAATTTGTTTATATGGATTGCTTTCCATCTTATTACCAACCTGCTGTATCAGCTTTTCAATTGCTTTTGATCGATGGAGTTTCGATTAACACATTTTAAGCAGATTTTCTTGTAACCAATGTTTCAGAATCTGTGTTTGTTTGTTGCTGCTGTGTGCAAAGCTTTCTATAGTTTCAAAGGAAGTATAAAGAATTGCCAAATCTGAGAGAGAAGAACAGGGGCCAATTAAAGAACCTAATTAGGACACAATCAAGCCATGACAACAGATGTTCCTCAGCCAAACAAGAAGCAGGATGGTACCTCGGACTCCATTTCCATTGGAGCAGTGATTAAAGCTGTCCAAGCATTACCAGACATGGATGAAGACCTTGTATTAGACGCCTGTGATTTCCTTCAAAAGGAAAATAACGCCGAAATATTTACTGCATTGGATGTCAAATTTCGAAGAAAATGGTTGATAAGAAAACTTCGTCCACAGGTCTGGTTTCTTCTAATGCAAGAACTTTTTTATGGTTTTCTTTTTGAAAAACATGTTTAAGAATGTTGGTAGTAATTTCGATCCACTTTTGTCTTGAACAGACCATGTTTGTGAAGATTCATCATATCAAGAAAATCGTTTTAGAGGTTCTAAGCTCAGAGACGATATCTGATGTGAAGGCTAAAATCGAAGAAAAGGAAGGTATACGTCAGAAACAACAACGGTTGCTTTTTAGAGGTCGTAAGCTTGAAGATCAAAGAACTCTAGCAGACTGCGGTGTTCAGAATGACTCTGAACTGTTCTTGGTGCTTTGTCTTTGTGGTTGTTAGTGGTGTTTTTCTTTGGAGGGTTCACGGTTCTGTTCGGTAAAATCAAATTGTGGCCATCAATTTGCTATGTAAATTGAAATTTAGACTCGGTTTTATATAGTGTTCACGGTTCACTATCAAAAGTTAGAAGTACG

mRNA sequence

AAGACTTTACTATTTCGTCTCTTCTCCACGCCCAATTAGCCGCCATTGCTAGAAAGGTTATTTGCTTGAAGCATTTTTCCAATTGCACTCATCCCTCTTTCTCTTTCTCACTTATTCCTCACATCACTTTTCTCCTTCACATGAGGAATACATTGAAGTCTTCAATCACAATCTCTTGATCCAGGGCTTTCTAAGAATCTGTGTTTGTTTGTTGCTGCTGTGTGCAAAGCTTTCTATAGTTTCAAAGGAAGTATAAAGAATTGCCAAATCTGAGAGAGAAGAACAGGGGCCAATTAAAGAACCTAATTAGGACACAATCAAGCCATGACAACAGATGTTCCTCAGCCAAACAAGAAGCAGGATGGTACCTCGGACTCCATTTCCATTGGAGCAGTGATTAAAGCTGTCCAAGCATTACCAGACATGGATGAAGACCTTGTATTAGACGCCTGTGATTTCCTTCAAAAGGAAAATAACGCCGAAATATTTACTGCATTGGATGTCAAATTTCGAAGAAAATGGTTGATAAGAAAACTTCGTCCACAGACCATGTTTGTGAAGATTCATCATATCAAGAAAATCGTTTTAGAGGTTCTAAGCTCAGAGACGATATCTGATGTGAAGGCTAAAATCGAAGAAAAGGAAGGTATACGTCAGAAACAACAACGGTTGCTTTTTAGAGGTCGTAAGCTTGAAGATCAAAGAACTCTAGCAGACTGCGGTGTTCAGAATGACTCTGAACTGTTCTTGGTGCTTTGTCTTTGTGGTTGTTAGTGGTGTTTTTCTTTGGAGGGTTCACGGTTCTGTTCGGTAAAATCAAATTGTGGCCATCAATTTGCTATGTAAATTGAAATTTAGACTCGGTTTTATATAGTGTTCACGGTTCACTATCAAAAGTTAGAAGTACG

Coding sequence (CDS)

ATGACAACAGATGTTCCTCAGCCAAACAAGAAGCAGGATGGTACCTCGGACTCCATTTCCATTGGAGCAGTGATTAAAGCTGTCCAAGCATTACCAGACATGGATGAAGACCTTGTATTAGACGCCTGTGATTTCCTTCAAAAGGAAAATAACGCCGAAATATTTACTGCATTGGATGTCAAATTTCGAAGAAAATGGTTGATAAGAAAACTTCGTCCACAGACCATGTTTGTGAAGATTCATCATATCAAGAAAATCGTTTTAGAGGTTCTAAGCTCAGAGACGATATCTGATGTGAAGGCTAAAATCGAAGAAAAGGAAGGTATACGTCAGAAACAACAACGGTTGCTTTTTAGAGGTCGTAAGCTTGAAGATCAAAGAACTCTAGCAGACTGCGGTGTTCAGAATGACTCTGAACTGTTCTTGGTGCTTTGTCTTTGTGGTTGTTAG

Protein sequence

MTTDVPQPNKKQDGTSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIRKLRPQTMFVKIHHIKKIVLEVLSSETISDVKAKIEEKEGIRQKQQRLLFRGRKLEDQRTLADCGVQNDSELFLVLCLCGC

Homology

[Close]

BLAST of Lcy11g013930 vs. ExPASy Swiss-Prot
Match: Q39256 (Polyubiquitin 8 OS=Arabidopsis thaliana OX=3702 GN=UBQ8 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-13
Identity = 59/139 (42.45%), Postives = 87/139 (62.59%), Query Frame = 0


Query: 15  TSDSI-SIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRK---WLIRK 74
           TSDSI ++ A I+  + +P +D+  ++ A   L+     +  T  D   +++    L+ +
Sbjct: 21  TSDSIHNVKAKIQNKEGIP-LDQQRLIFAGKQLE-----DGLTLADYNIQKESTLHLVLR 80

Query: 75  LR-PQTMFVKIHHIKKIVLEVLSSETISDVKAKIEEKEGIRQKQQRLLFRGRKLEDQRTL 134
           LR    +FV+    K I LEV SS+TI +VKAKI++KEGI  +QQRL+F G++LED RTL
Sbjct: 81  LRGGMQIFVQTLTGKTITLEVKSSDTIDNVKAKIQDKEGILPRQQRLIFAGKQLEDGRTL 140

Query: 135 ADCGVQNDSELFLVLCLCG 149
           AD  +Q +S L LVL LCG
Sbjct: 141 ADYNIQKESTLHLVLRLCG 153

[Close]

BLAST of Lcy11g013930 vs. ExPASy Swiss-Prot
Match: Q9FHQ6 (Polyubiquitin 9 OS=Arabidopsis thaliana OX=3702 GN=UBQ9 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.8e-13
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 67  LIRKLR-PQTMFVKIHHIKKIVLEVLSSETISDVKAKIEEKEGIRQKQQRLLFRGRKLED 126
           L+ +LR    +FV+    K I LEV SS+T  +VKAKI++KEGI   QQRL+F G++LED
Sbjct: 147 LVLRLRGGMQIFVRTLTRKTIALEVESSDTTDNVKAKIQDKEGIPPDQQRLIFAGKQLED 206

Query: 127 QRTLADCGVQNDSELFLVLCLCG 149
            RTLAD  +Q +S L LVL LCG
Sbjct: 207 GRTLADYNIQKESTLHLVLRLCG 229

[Close]

BLAST of Lcy11g013930 vs. ExPASy Swiss-Prot
Match: P59271 (Ubiquitin-40S ribosomal protein S27a-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27AA PE=2 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 3.7e-12
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 76  MFVKIHHIKKIVLEVLSSETISDVKAKIEEKEGIRQKQQRLLFRGRKLEDQRTLADCGVQ 135
           +FVK    K I LEV SS+TI +VKAKI++KEGI   QQRL+F G++LED RTLAD  +Q
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62

Query: 136 NDSELFLVLCLCG 149
            +S L LVL L G
Sbjct: 63  KESTLHLVLRLRG 75

[Close]

BLAST of Lcy11g013930 vs. ExPASy Swiss-Prot
Match: Q9ARZ9 (Ubiquitin-40S ribosomal protein S27a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS27AA PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.7e-12
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 76  MFVKIHHIKKIVLEVLSSETISDVKAKIEEKEGIRQKQQRLLFRGRKLEDQRTLADCGVQ 135
           +FVK    K I LEV SS+TI +VKAKI++KEGI   QQRL+F G++LED RTLAD  +Q
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62

Query: 136 NDSELFLVLCLCG 149
            +S L LVL L G
Sbjct: 63  KESTLHLVLRLRG 75

[Close]

BLAST of Lcy11g013930 vs. ExPASy Swiss-Prot
Match: P59232 (Ubiquitin-40S ribosomal protein S27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27AB PE=2 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 3.7e-12
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 76  MFVKIHHIKKIVLEVLSSETISDVKAKIEEKEGIRQKQQRLLFRGRKLEDQRTLADCGVQ 135
           +FVK    K I LEV SS+TI +VKAKI++KEGI   QQRL+F G++LED RTLAD  +Q
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62

Query: 136 NDSELFLVLCLCG 149
            +S L LVL L G
Sbjct: 63  KESTLHLVLRLRG 75

[Close]

BLAST of Lcy11g013930 vs. ExPASy TrEMBL
Match: A0A5D3BMH5 (Polyubiquitin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00560 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.7e-32
Identity = 79/132 (59.85%), Postives = 101/132 (76.52%), Query Frame = 0


Query: 20  SIGAVIKAVQALPDMDEDLVLDACDFL-QKENNAEIFTALDVKFRRKWLIRKLRPQ---T 79
           SI  VIKAV+ALPDMDEDL+LDA DFL   EN A++F ++D K RRKWLI+KLRPQ    
Sbjct: 15  SIETVIKAVEALPDMDEDLILDAFDFLMDNENKAKVFISMDAKLRRKWLIKKLRPQPEMQ 74

Query: 80  MFVKIHHIKKIVLEVLSSETISDVKAKIEEKEGIRQKQQRLLFRGRKLEDQRTLADCGVQ 139
           +FVK    +K+ L+VL+++TI+DVKAKIE KEG  Q+QQRL+F G KL+D RTL  CG+ 
Sbjct: 75  IFVKTLEGRKMSLDVLTTDTINDVKAKIEAKEGYPQQQQRLVFNGWKLDDDRTLGSCGLW 134

Query: 140 NDSELFLVLCLC 148
           + S L L+LC+C
Sbjct: 135 SGSSLHLILCVC 146

[Close]

BLAST of Lcy11g013930 vs. ExPASy TrEMBL
Match: A0A6J1DN50 (ubiquitin-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022115 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.7e-32
Identity = 82/141 (58.16%), Postives = 102/141 (72.34%), Query Frame = 0


Query: 10  KKQDGTSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIR 69
           K++DG+S SISIGAVIKAVQALPDMDEDL+LDACDF Q   N EIF ALD K R++WL+R
Sbjct: 2   KQRDGSSGSISIGAVIKAVQALPDMDEDLILDACDFFQNPQNGEIFMALDRKLRKRWLLR 61

Query: 70  KL-RPQTMFVKIHHIKKIVLEVLSSETISDVKAKIEEKEGIRQKQQRLLFRGRKLEDQRT 129
            L R   + VK+   K +  E+L+S TI  VKAKIE  EG    QQRL++ GR+LED RT
Sbjct: 62  NLPRSGQINVKMLTGKTLCFEILASNTIDVVKAKIEAMEGYPPDQQRLIYGGRQLEDGRT 121

Query: 130 LADCGVQNDSELFLVLCLCGC 150
           LA+  +++ S L +V  LCGC
Sbjct: 122 LAEYNIRSGSTLHMVTRLCGC 142

[Close]

BLAST of Lcy11g013930 vs. ExPASy TrEMBL
Match: A0A1S3CKU5 (polyubiquitin-like OS=Cucumis melo OX=3656 GN=LOC103501609 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.7e-32
Identity = 79/132 (59.85%), Postives = 101/132 (76.52%), Query Frame = 0


Query: 20  SIGAVIKAVQALPDMDEDLVLDACDFL-QKENNAEIFTALDVKFRRKWLIRKLRPQ---T 79
           SI  VIKAV+ALPDMDEDL+LDA DFL   EN A++F ++D K RRKWLI+KLRPQ    
Sbjct: 15  SIETVIKAVEALPDMDEDLILDAFDFLMDNENKAKVFISMDAKLRRKWLIKKLRPQPEMQ 74

Query: 80  MFVKIHHIKKIVLEVLSSETISDVKAKIEEKEGIRQKQQRLLFRGRKLEDQRTLADCGVQ 139
           +FVK    +K+ L+VL+++TI+DVKAKIE KEG  Q+QQRL+F G KL+D RTL  CG+ 
Sbjct: 75  IFVKTLEGRKMSLDVLTTDTINDVKAKIEAKEGYPQQQQRLVFNGWKLDDDRTLGSCGLW 134

Query: 140 NDSELFLVLCLC 148
           + S L L+LC+C
Sbjct: 135 SGSSLHLILCVC 146

[Close]

BLAST of Lcy11g013930 vs. ExPASy TrEMBL
Match: A0A6J1DL46 (ubiquitin-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022115 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.2e-31
Identity = 81/143 (56.64%), Postives = 102/143 (71.33%), Query Frame = 0


Query: 10  KKQDGTSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIR 69
           K++DG+S SISIGAVIKAVQALPDMDEDL+LDACDF Q   N EIF ALD K R++WL+R
Sbjct: 2   KQRDGSSGSISIGAVIKAVQALPDMDEDLILDACDFFQNPQNGEIFMALDRKLRKRWLLR 61

Query: 70  KL-RPQTMFVKIHHI--KKIVLEVLSSETISDVKAKIEEKEGIRQKQQRLLFRGRKLEDQ 129
            L R   M + +  +  K +  E+L+S TI  VKAKIE  EG    QQRL++ GR+LED 
Sbjct: 62  NLPRSGQMQINVKMLTGKTLCFEILASNTIDVVKAKIEAMEGYPPDQQRLIYGGRQLEDG 121

Query: 130 RTLADCGVQNDSELFLVLCLCGC 150
           RTLA+  +++ S L +V  LCGC
Sbjct: 122 RTLAEYNIRSGSTLHMVTRLCGC 144

[Close]

BLAST of Lcy11g013930 vs. ExPASy TrEMBL
Match: A0A6J1DNT8 (ubiquitin-like OS=Momordica charantia OX=3673 GN=LOC111022114 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.3e-28
Identity = 78/137 (56.93%), Postives = 96/137 (70.07%), Query Frame = 0


Query: 15  TSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIRKL-RP 74
           TS+SISIGAVIKAVQALPDMDED +LDACDFLQ   N EIF AL  K R++WL+R L RP
Sbjct: 10  TSESISIGAVIKAVQALPDMDEDFILDACDFLQNPQNGEIFMALAPKLRKRWLLRNLPRP 69

Query: 75  QTMFVKIHHI--KKIVLEVLSSETISDVKAKIEEKEGIRQKQQRLLFRGRKLEDQRTLAD 134
             M +    +  K+  LEVL+S+T+  VKAKIE KEG   ++QRL + G +LE   TLA+
Sbjct: 70  GQMKINFQTVCGKRFGLEVLASDTVEVVKAKIEGKEGYPPEKQRLFYGGVQLEGATTLAE 129

Query: 135 CGVQNDSELFLVLCLCG 149
           C V   SEL ++L  CG
Sbjct: 130 CRVTPGSELKIILPKCG 146

[Close]

BLAST of Lcy11g013930 vs. NCBI nr
Match: XP_022154972.1 (ubiquitin-like isoform X2 [Momordica charantia])

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-31
Identity = 82/141 (58.16%), Postives = 102/141 (72.34%), Query Frame = 0


Query: 10  KKQDGTSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIR 69
           K++DG+S SISIGAVIKAVQALPDMDEDL+LDACDF Q   N EIF ALD K R++WL+R
Sbjct: 2   KQRDGSSGSISIGAVIKAVQALPDMDEDLILDACDFFQNPQNGEIFMALDRKLRKRWLLR 61

Query: 70  KL-RPQTMFVKIHHIKKIVLEVLSSETISDVKAKIEEKEGIRQKQQRLLFRGRKLEDQRT 129
            L R   + VK+   K +  E+L+S TI  VKAKIE  EG    QQRL++ GR+LED RT
Sbjct: 62  NLPRSGQINVKMLTGKTLCFEILASNTIDVVKAKIEAMEGYPPDQQRLIYGGRQLEDGRT 121

Query: 130 LADCGVQNDSELFLVLCLCGC 150
           LA+  +++ S L +V  LCGC
Sbjct: 122 LAEYNIRSGSTLHMVTRLCGC 142

[Close]

BLAST of Lcy11g013930 vs. NCBI nr
Match: XP_008463442.1 (PREDICTED: polyubiquitin-like [Cucumis melo] >KAA0025478.1 polyubiquitin-like [Cucumis melo var. makuwa] >TYK00387.1 polyubiquitin-like [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-31
Identity = 79/132 (59.85%), Postives = 101/132 (76.52%), Query Frame = 0


Query: 20  SIGAVIKAVQALPDMDEDLVLDACDFL-QKENNAEIFTALDVKFRRKWLIRKLRPQ---T 79
           SI  VIKAV+ALPDMDEDL+LDA DFL   EN A++F ++D K RRKWLI+KLRPQ    
Sbjct: 15  SIETVIKAVEALPDMDEDLILDAFDFLMDNENKAKVFISMDAKLRRKWLIKKLRPQPEMQ 74

Query: 80  MFVKIHHIKKIVLEVLSSETISDVKAKIEEKEGIRQKQQRLLFRGRKLEDQRTLADCGVQ 139
           +FVK    +K+ L+VL+++TI+DVKAKIE KEG  Q+QQRL+F G KL+D RTL  CG+ 
Sbjct: 75  IFVKTLEGRKMSLDVLTTDTINDVKAKIEAKEGYPQQQQRLVFNGWKLDDDRTLGSCGLW 134

Query: 140 NDSELFLVLCLC 148
           + S L L+LC+C
Sbjct: 135 SGSSLHLILCVC 146

[Close]

BLAST of Lcy11g013930 vs. NCBI nr
Match: XP_022154970.1 (ubiquitin-like isoform X1 [Momordica charantia] >XP_022154971.1 ubiquitin-like isoform X1 [Momordica charantia])

HSP 1 Score: 145.2 bits (365), Expect = 4.5e-31
Identity = 81/143 (56.64%), Postives = 102/143 (71.33%), Query Frame = 0


Query: 10  KKQDGTSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIR 69
           K++DG+S SISIGAVIKAVQALPDMDEDL+LDACDF Q   N EIF ALD K R++WL+R
Sbjct: 2   KQRDGSSGSISIGAVIKAVQALPDMDEDLILDACDFFQNPQNGEIFMALDRKLRKRWLLR 61

Query: 70  KL-RPQTMFVKIHHI--KKIVLEVLSSETISDVKAKIEEKEGIRQKQQRLLFRGRKLEDQ 129
            L R   M + +  +  K +  E+L+S TI  VKAKIE  EG    QQRL++ GR+LED 
Sbjct: 62  NLPRSGQMQINVKMLTGKTLCFEILASNTIDVVKAKIEAMEGYPPDQQRLIYGGRQLEDG 121

Query: 130 RTLADCGVQNDSELFLVLCLCGC 150
           RTLA+  +++ S L +V  LCGC
Sbjct: 122 RTLAEYNIRSGSTLHMVTRLCGC 144

[Close]

BLAST of Lcy11g013930 vs. NCBI nr
Match: XP_022154969.1 (ubiquitin-like [Momordica charantia])

HSP 1 Score: 135.2 bits (339), Expect = 4.7e-28
Identity = 78/137 (56.93%), Postives = 96/137 (70.07%), Query Frame = 0


Query: 15  TSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIRKL-RP 74
           TS+SISIGAVIKAVQALPDMDED +LDACDFLQ   N EIF AL  K R++WL+R L RP
Sbjct: 10  TSESISIGAVIKAVQALPDMDEDFILDACDFLQNPQNGEIFMALAPKLRKRWLLRNLPRP 69

Query: 75  QTMFVKIHHI--KKIVLEVLSSETISDVKAKIEEKEGIRQKQQRLLFRGRKLEDQRTLAD 134
             M +    +  K+  LEVL+S+T+  VKAKIE KEG   ++QRL + G +LE   TLA+
Sbjct: 70  GQMKINFQTVCGKRFGLEVLASDTVEVVKAKIEGKEGYPPEKQRLFYGGVQLEGATTLAE 129

Query: 135 CGVQNDSELFLVLCLCG 149
           C V   SEL ++L  CG
Sbjct: 130 CRVTPGSELKIILPKCG 146

[Close]

BLAST of Lcy11g013930 vs. NCBI nr
Match: OMO82032.1 (hypothetical protein COLO4_23291 [Corchorus olitorius])

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-16
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 10  KKQDGTSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIR 69
           KK DG S+SISI  VI AVQALPDMDEDL+LDACDFL+ E  A+ F ALDVK R+KWL+R
Sbjct: 428 KKDDGNSNSISIENVITAVQALPDMDEDLILDACDFLEDEIKAKTFLALDVKLRKKWLLR 487

Query: 70  KLRPQ 75
           KLRPQ
Sbjct: 488 KLRPQ 492

[Close]

BLAST of Lcy11g013930 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 79.0 bits (193), Expect = 3.7e-15
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 8   PNKKQDGTSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWL 67
           P K +   + ++SI   ++A+QALPDMD++L+LDACD L+ +  A+ F ALDVK R+KWL
Sbjct: 371 PKKPRVDETQTMSIEDTVEAIQALPDMDDELILDACDLLEDKLKAKTFLALDVKLRKKWL 430

Query: 68  IRKLRPQ 75
           +RKLRPQ
Sbjct: 431 LRKLRPQ 437

[Close]

BLAST of Lcy11g013930 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 79.0 bits (193), Expect = 3.7e-15
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 8   PNKKQDGTSDSISIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWL 67
           P K +   + ++SI   ++A+QALPDMD++L+LDACD L+ +  A+ F ALDVK R+KWL
Sbjct: 371 PKKPRVDETQTMSIEDTVEAIQALPDMDDELILDACDLLEDKLKAKTFLALDVKLRKKWL 430

Query: 68  IRKLRPQ 75
           +RKLRPQ
Sbjct: 431 LRKLRPQ 437

[Close]

BLAST of Lcy11g013930 vs. TAIR 10
Match: AT3G09790.1 (ubiquitin 8 )

HSP 1 Score: 77.8 bits (190), Expect = 8.2e-15
Identity = 59/139 (42.45%), Postives = 87/139 (62.59%), Query Frame = 0


Query: 15  TSDSI-SIGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRK---WLIRK 74
           TSDSI ++ A I+  + +P +D+  ++ A   L+     +  T  D   +++    L+ +
Sbjct: 21  TSDSIHNVKAKIQNKEGIP-LDQQRLIFAGKQLE-----DGLTLADYNIQKESTLHLVLR 80

Query: 75  LR-PQTMFVKIHHIKKIVLEVLSSETISDVKAKIEEKEGIRQKQQRLLFRGRKLEDQRTL 134
           LR    +FV+    K I LEV SS+TI +VKAKI++KEGI  +QQRL+F G++LED RTL
Sbjct: 81  LRGGMQIFVQTLTGKTITLEVKSSDTIDNVKAKIQDKEGILPRQQRLIFAGKQLEDGRTL 140

Query: 135 ADCGVQNDSELFLVLCLCG 149
           AD  +Q +S L LVL LCG
Sbjct: 141 ADYNIQKESTLHLVLRLCG 153

[Close]

BLAST of Lcy11g013930 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 75.1 bits (183), Expect = 5.3e-14
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 21  IGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIRKLRP 74
           IG  + A+QALPDMD++L+LDACD L+ E  A+ F ALDV  RRKWL+RKLRP
Sbjct: 741 IGNALDALQALPDMDDELLLDACDLLEDERKAKTFLALDVSLRRKWLVRKLRP 793

[Close]

BLAST of Lcy11g013930 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 75.1 bits (183), Expect = 5.3e-14
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 21  IGAVIKAVQALPDMDEDLVLDACDFLQKENNAEIFTALDVKFRRKWLIRKLRP 74
           IG  + A+QALPDMD++L+LDACD L+ E  A+ F ALDV  RRKWL+RKLRP
Sbjct: 718 IGNALDALQALPDMDDELLLDACDLLEDERKAKTFLALDVSLRRKWLVRKLRP 770

The following BLAST results are available for this feature:

BLAST of Lcy11g013930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39256	1.2e-13	42.45	Polyubiquitin 8 OS=Arabidopsis thaliana OX=3702 GN=UBQ8 PE=3 SV=1	[more]
Q9FHQ6	9.8e-13	54.22	Polyubiquitin 9 OS=Arabidopsis thaliana OX=3702 GN=UBQ9 PE=3 SV=1	[more]
P59271	3.7e-12	58.90	Ubiquitin-40S ribosomal protein S27a-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A...	[more]
Q9ARZ9	3.7e-12	58.90	Ubiquitin-40S ribosomal protein S27a-1 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
P59232	3.7e-12	58.90	Ubiquitin-40S ribosomal protein S27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27A...	[more]

BLAST of Lcy11g013930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BMH5	5.7e-32	59.85	Polyubiquitin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G...	[more]
A0A6J1DN50	5.7e-32	58.16	ubiquitin-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022115 PE=4 SV...	[more]
A0A1S3CKU5	5.7e-32	59.85	polyubiquitin-like OS=Cucumis melo OX=3656 GN=LOC103501609 PE=4 SV=1	[more]
A0A6J1DL46	2.2e-31	56.64	ubiquitin-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022115 PE=4 SV...	[more]
A0A6J1DNT8	2.3e-28	56.93	ubiquitin-like OS=Momordica charantia OX=3673 GN=LOC111022114 PE=4 SV=1	[more]

BLAST of Lcy11g013930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154972.1	1.2e-31	58.16	ubiquitin-like isoform X2 [Momordica charantia]	[more]
XP_008463442.1	1.2e-31	59.85	PREDICTED: polyubiquitin-like [Cucumis melo] >KAA0025478.1 polyubiquitin-like [C...	[more]
XP_022154970.1	4.5e-31	56.64	ubiquitin-like isoform X1 [Momordica charantia] >XP_022154971.1 ubiquitin-like i...	[more]
XP_022154969.1	4.7e-28	56.93	ubiquitin-like [Momordica charantia]	[more]
OMO82032.1	1.8e-16	73.85	hypothetical protein COLO4_23291 [Corchorus olitorius]	[more]

BLAST of Lcy11g013930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02210.1	3.7e-15	53.73	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	3.7e-15	53.73	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G09790.1	8.2e-15	42.45	ubiquitin 8	[more]
AT2G24960.1	5.3e-14	64.15	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.2	5.3e-14	64.15	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019956	Ubiquitin domain	PRINTS	PR00348	UBIQUITIN	coord: 105..125 score: 59.55 coord: 84..104 score: 58.27 coord: 126..147 score: 48.96
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 76..145 e-value: 3.6E-17 score: 73.0
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 77..144 e-value: 8.0E-21 score: 73.6
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 74..144 score: 20.174116
None	No IPR available	GENE3D	3.10.20.90		coord: 70..149 e-value: 3.4E-25 score: 89.6
None	No IPR available	PANTHER	PTHR10666:SF346	POLYUBIQUITIN 11	coord: 66..148
None	No IPR available	PANTHER	PTHR10666	UBIQUITIN	coord: 66..148
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 64..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g013930.1	Lcy11g013930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding