Lcy11g013830 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g013830
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DUF4228 domain protein
Location	Chr11: 22876169 .. 22876934 (+)
RNA-Seq Expression	Lcy11g013830
Synteny	Lcy11g013830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCCTCCATCATCATTAATTATTTATACAACACCACCCTCTCTGTTTCTCCAAATCCCACCTCTCTCTCTCTCTCTCTCTCGCCAGAGAGATCGCCATGGGAAACTGTGTTTGCAGCAAATTTATGATCTGTGCGAAATCATCGAGAATTAGCGACGAGGAGGCTCTCGAGATGGTGAAGAGAAGTCTTATGGCCCACGACGAGGCTCCGAGATCTTCGGTGATGTCGACGGCGACGGAGGTGAAGATCAAGATCACAAAGAGAGAGCTGGAGATGTTACTGGCTAATTATAAGGTGGTGGAGGTGAAGGAGGAGCTGCCGACAGCGCAGTTTTTATCGCGGCTGATCGACGTTGATGATGCGCTCGAGATGCAGCCGCGATCATGGCGGCCTTCCCTGCAGAGCATTCCTGAGGTTGATTGATCAGAAATGGTGGAGATCATAGATATGGTTCTGCAGAGGAAAGAGTTTTGATGGGGGCATTTTTTTTTTTTTTTGGGATCTATACTGGTTTTATGTCCCTTGAAGACTTTGGGAGATCTCAGTTTTTCTATCTCTCTTGGTTGAAAAATTGGAGTTTTTTGATCTCCTTTGCTGTTTGTTCTCCGATGATACGCATATAGAACCAAACTGTTAGTAAGCCTTTAAAATGTTGTTCTTTTCAGGTTAATTTGCATTTTCTCCAAACATAGTCTCCATCTTTCATTGATTAAAGCTGTTTTTTTTTTGTACCATGAATCAATAGTTGGGACCAAGTGAACCTAGC

mRNA sequence

AGCCTCCATCATCATTAATTATTTATACAACACCACCCTCTCTGTTTCTCCAAATCCCACCTCTCTCTCTCTCTCTCTCTCGCCAGAGAGATCGCCATGGGAAACTGTGTTTGCAGCAAATTTATGATCTGTGCGAAATCATCGAGAATTAGCGACGAGGAGGCTCTCGAGATGGTGAAGAGAAGTCTTATGGCCCACGACGAGGCTCCGAGATCTTCGGTGATGTCGACGGCGACGGAGGTGAAGATCAAGATCACAAAGAGAGAGCTGGAGATGTTACTGGCTAATTATAAGGTGGTGGAGGTGAAGGAGGAGCTGCCGACAGCGCAGTTTTTATCGCGGCTGATCGACGTTGATGATGCGCTCGAGATGCAGCCGCGATCATGGCGGCCTTCCCTGCAGAGCATTCCTGAGGTTGATTGATCAGAAATGGTGGAGATCATAGATATGGTTCTGCAGAGGAAAGAGTTTTGATGGGGGCATTTTTTTTTTTTTTTGGGATCTATACTGGTTTTATGTCCCTTGAAGACTTTGGGAGATCTCAGTTTTTCTATCTCTCTTGGTTGAAAAATTGGAGTTTTTTGATCTCCTTTGCTGTTTGTTCTCCGATGATACGCATATAGAACCAAACTGTTAGTAAGCCTTTAAAATGTTGTTCTTTTCAGGTTAATTTGCATTTTCTCCAAACATAGTCTCCATCTTTCATTGATTAAAGCTGTTTTTTTTTTGTACCATGAATCAATAGTTGGGACCAAGTGAACCTAGC

Coding sequence (CDS)

ATGGGAAACTGTGTTTGCAGCAAATTTATGATCTGTGCGAAATCATCGAGAATTAGCGACGAGGAGGCTCTCGAGATGGTGAAGAGAAGTCTTATGGCCCACGACGAGGCTCCGAGATCTTCGGTGATGTCGACGGCGACGGAGGTGAAGATCAAGATCACAAAGAGAGAGCTGGAGATGTTACTGGCTAATTATAAGGTGGTGGAGGTGAAGGAGGAGCTGCCGACAGCGCAGTTTTTATCGCGGCTGATCGACGTTGATGATGCGCTCGAGATGCAGCCGCGATCATGGCGGCCTTCCCTGCAGAGCATTCCTGAGGTTGATTGA

Protein sequence

MGNCVCSKFMICAKSSRISDEEALEMVKRSLMAHDEAPRSSVMSTATEVKIKITKRELEMLLANYKVVEVKEELPTAQFLSRLIDVDDALEMQPRSWRPSLQSIPEVD

Homology

[Close]

BLAST of Lcy11g013830 vs. ExPASy TrEMBL
Match: A0A5D3BTP7 (DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00060 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.0e-35
Identity = 86/118 (72.88%), Postives = 97/118 (82.20%), Query Frame = 0


Query: 1   MGNCVCSKFMICAKSSRISDEEALEMVKRSLMAH-------DEAPRSSV---MSTATEVK 60
           MGNCV SK+ +C KS+RISDEEALEM+KR++MA+       DE PRSSV    +T TEVK
Sbjct: 1   MGNCVSSKY-LCGKSTRISDEEALEMMKRTVMAYNDETPKIDETPRSSVAATTTTTTEVK 60

Query: 61  IKITKRELEMLLANYKVVEVKEELPTAQFLSRLIDVDDALEMQPRSWRPSLQSIPEVD 109
           IKITKRELEMLL NYKVVEVKEEL T QFLSRLID+D+ +EMQPRSWRPSLQSIPE D
Sbjct: 61  IKITKRELEMLLGNYKVVEVKEELSTTQFLSRLIDIDEGIEMQPRSWRPSLQSIPETD 117

[Close]

BLAST of Lcy11g013830 vs. ExPASy TrEMBL
Match: A0A1S4E465 (uncharacterized protein LOC103501581 OS=Cucumis melo OX=3656 GN=LOC103501581 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.0e-35
Identity = 86/118 (72.88%), Postives = 97/118 (82.20%), Query Frame = 0


Query: 1   MGNCVCSKFMICAKSSRISDEEALEMVKRSLMAH-------DEAPRSSV---MSTATEVK 60
           MGNCV SK+ +C KS+RISDEEALEM+KR++MA+       DE PRSSV    +T TEVK
Sbjct: 1   MGNCVSSKY-LCGKSTRISDEEALEMMKRTVMAYNDETPKIDETPRSSVAATTTTTTEVK 60

Query: 61  IKITKRELEMLLANYKVVEVKEELPTAQFLSRLIDVDDALEMQPRSWRPSLQSIPEVD 109
           IKITKRELEMLL NYKVVEVKEEL T QFLSRLID+D+ +EMQPRSWRPSLQSIPE D
Sbjct: 61  IKITKRELEMLLGNYKVVEVKEELSTTQFLSRLIDIDEGIEMQPRSWRPSLQSIPETD 117

[Close]

BLAST of Lcy11g013830 vs. ExPASy TrEMBL
Match: A0A0A0L7M3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G076570 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.3e-30
Identity = 79/115 (68.70%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 1   MGNCVCSKFMICAKSSRI-SDEEALEMVKRSLMAHDEAPRSSVMSTATEVKIKITKRELE 60
           MGNCV S   +C K +RI SDEEALEM+KR +MA+DE PRSS  +T TEVKIKITK+ELE
Sbjct: 1   MGNCVSSN-CLCGKPTRILSDEEALEMMKRRIMAYDETPRSSKAATTTEVKIKITKKELE 60

Query: 61  MLLANYKVVEVKEELPTAQFLS------RLIDVDDALEMQPRSWRPSLQSIPEVD 109
           MLL NY VVEVK+ELP+A F S      + ID+DDA EMQPRSWRPSLQSIPE+D
Sbjct: 61  MLLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFEMQPRSWRPSLQSIPEMD 114

[Close]

BLAST of Lcy11g013830 vs. ExPASy TrEMBL
Match: A0A5D3BTQ9 (DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00050 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 8.7e-14
Identity = 53/109 (48.62%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 1   MGNCVCSKFMICAKSSRISDEEALEMVKRSLMAHDEAPRSSVMSTATEVKIKITKRELEM 60
           MGNC  +K++         +EE  EM++R L+    A + S  ST TE+KI+ITK+ELE 
Sbjct: 1   MGNCTSNKYLAETMPMSDDEEEVEEMLRRRLVVESRAQKCSA-STTTELKIRITKKELEK 60

Query: 61  LLANYKVVEVKEELPTAQFLSRLIDVDDALE-MQPRSWRPSLQSIPEVD 109
           LL    +    EELP A+ LS+LIDV DA E    RSW+PSLQSIPEV+
Sbjct: 61  LLCKVDM----EELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 104

[Close]

BLAST of Lcy11g013830 vs. ExPASy TrEMBL
Match: A0A1S3CJ77 (uncharacterized protein LOC103501580 OS=Cucumis melo OX=3656 GN=LOC103501580 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 8.7e-14
Identity = 53/109 (48.62%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 1   MGNCVCSKFMICAKSSRISDEEALEMVKRSLMAHDEAPRSSVMSTATEVKIKITKRELEM 60
           MGNC  +K++         +EE  EM++R L+    A + S  ST TE+KI+ITK+ELE 
Sbjct: 1   MGNCTSNKYLAETMPMSDDEEEVEEMLRRRLVVESRAQKCSA-STTTELKIRITKKELEK 60

Query: 61  LLANYKVVEVKEELPTAQFLSRLIDVDDALE-MQPRSWRPSLQSIPEVD 109
           LL    +    EELP A+ LS+LIDV DA E    RSW+PSLQSIPEV+
Sbjct: 61  LLCKVDM----EELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 104

[Close]

BLAST of Lcy11g013830 vs. NCBI nr
Match: XP_016903026.1 (PREDICTED: uncharacterized protein LOC103501581 [Cucumis melo] >KAA0033990.1 DUF4228 domain protein [Cucumis melo var. makuwa] >TYK02555.1 DUF4228 domain protein [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 1.8e-34
Identity = 86/118 (72.88%), Postives = 97/118 (82.20%), Query Frame = 0


Query: 1   MGNCVCSKFMICAKSSRISDEEALEMVKRSLMAH-------DEAPRSSV---MSTATEVK 60
           MGNCV SK+ +C KS+RISDEEALEM+KR++MA+       DE PRSSV    +T TEVK
Sbjct: 1   MGNCVSSKY-LCGKSTRISDEEALEMMKRTVMAYNDETPKIDETPRSSVAATTTTTTEVK 60

Query: 61  IKITKRELEMLLANYKVVEVKEELPTAQFLSRLIDVDDALEMQPRSWRPSLQSIPEVD 109
           IKITKRELEMLL NYKVVEVKEEL T QFLSRLID+D+ +EMQPRSWRPSLQSIPE D
Sbjct: 61  IKITKRELEMLLGNYKVVEVKEELSTTQFLSRLIDIDEGIEMQPRSWRPSLQSIPETD 117

[Close]

BLAST of Lcy11g013830 vs. NCBI nr
Match: KAG6600784.1 (hypothetical protein SDJN03_06017, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031421.1 hypothetical protein SDJN02_05461, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153.7 bits (387), Expect = 9.2e-34
Identity = 84/108 (77.78%), Postives = 91/108 (84.26%), Query Frame = 0


Query: 1   MGNCVCSKFMICAKSSRISDEEALEMVKRSLMAHDEAPRSSVMSTATEVKIKITKRELEM 60
           MGNCV +K + C KSSRISDEEALEMVKRSLMA+DEAP +SV +T TE+KIKITKRELEM
Sbjct: 1   MGNCVSNK-IFCGKSSRISDEEALEMVKRSLMAYDEAPVASVTATTTELKIKITKRELEM 60

Query: 61  LLANYKVVEVKEELPTAQFLSRLIDVDDALEMQPRSWRPSLQSIPEVD 109
           LLANY VVEVKEEL T Q LS L  VD  LEMQPRSW+PSLQSIPE D
Sbjct: 61  LLANYNVVEVKEELQTEQLLSPLFYVDGTLEMQPRSWQPSLQSIPEAD 107

[Close]

BLAST of Lcy11g013830 vs. NCBI nr
Match: XP_011652736.1 (uncharacterized protein LOC105435072 [Cucumis sativus] >KGN56121.1 hypothetical protein Csa_011128 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 2.8e-30
Identity = 79/115 (68.70%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 1   MGNCVCSKFMICAKSSRI-SDEEALEMVKRSLMAHDEAPRSSVMSTATEVKIKITKRELE 60
           MGNCV S   +C K +RI SDEEALEM+KR +MA+DE PRSS  +T TEVKIKITK+ELE
Sbjct: 1   MGNCVSSN-CLCGKPTRILSDEEALEMMKRRIMAYDETPRSSKAATTTEVKIKITKKELE 60

Query: 61  MLLANYKVVEVKEELPTAQFLS------RLIDVDDALEMQPRSWRPSLQSIPEVD 109
           MLL NY VVEVK+ELP+A F S      + ID+DDA EMQPRSWRPSLQSIPE+D
Sbjct: 61  MLLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFEMQPRSWRPSLQSIPEMD 114

[Close]

BLAST of Lcy11g013830 vs. NCBI nr
Match: XP_038904231.1 (uncharacterized protein LOC120090574 [Benincasa hispida])

HSP 1 Score: 95.5 bits (236), Expect = 3.0e-16
Identity = 58/109 (53.21%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 1   MGNCVCSKFMICAKSSRISDEEALEMVKRSLMAHDEAPRSSVMSTATEVKIKITKRELEM 60
           MGNC  +K++         DEEA+E V+R L+ HD A + S  +T TE+KI+ITKRELE 
Sbjct: 1   MGNCTSNKYLAETMPMSDEDEEAVETVRRRLVVHDGARKCSA-NTTTELKIRITKRELEK 60

Query: 61  LLANYKVVEVKEELPTAQFLSRLIDVDDALE-MQPRSWRPSLQSIPEVD 109
           LL+   V    EELP  + LS+LIDV DA E    RSWRPSLQSIPEV+
Sbjct: 61  LLSKVDV----EELPVTELLSQLIDVGDAFESTHQRSWRPSLQSIPEVN 104

[Close]

BLAST of Lcy11g013830 vs. NCBI nr
Match: XP_008463409.1 (PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo] >TYK02554.1 DUF4228 domain protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-13
Identity = 53/109 (48.62%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 1   MGNCVCSKFMICAKSSRISDEEALEMVKRSLMAHDEAPRSSVMSTATEVKIKITKRELEM 60
           MGNC  +K++         +EE  EM++R L+    A + S  ST TE+KI+ITK+ELE 
Sbjct: 1   MGNCTSNKYLAETMPMSDDEEEVEEMLRRRLVVESRAQKCSA-STTTELKIRITKKELEK 60

Query: 61  LLANYKVVEVKEELPTAQFLSRLIDVDDALE-MQPRSWRPSLQSIPEVD 109
           LL    +    EELP A+ LS+LIDV DA E    RSW+PSLQSIPEV+
Sbjct: 61  LLCKVDM----EELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 104

[Close]

BLAST of Lcy11g013830 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 2.1e-04
Identity = 43/135 (31.85%), Postives = 60/135 (44.44%), Query Frame = 0


Query: 1   MGNCVC--SKFMICAKSSRISDEEALEMVKRSLMAHDE--------APRSSVMSTAT--- 60
           MGNC+C   K                   +RS + HD+           S+V ST++   
Sbjct: 1   MGNCICVTEKTTTSWSGDDNGSYNKRRRRRRSTVVHDDNDDGEKLLGETSNVTSTSSSSS 60

Query: 61  ----EVKIKITKRELEMLLANYKVVEVKEELPTAQFLSRLI----------DVDDALEMQ 109
               E+KI+ITK+ELE L+ N  +    + L   + LS+LI           VD     Q
Sbjct: 61  SERREIKIRITKKELEDLMRNIGL----KSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQ 120

The following BLAST results are available for this feature:

BLAST of Lcy11g013830 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g013830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BTP7	9.0e-35	72.88	DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9...	[more]
A0A1S4E465	9.0e-35	72.88	uncharacterized protein LOC103501581 OS=Cucumis melo OX=3656 GN=LOC103501581 PE=...	[more]
A0A0A0L7M3	1.3e-30	68.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G076570 PE=4 SV=1	[more]
A0A5D3BTQ9	8.7e-14	48.62	DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9...	[more]
A0A1S3CJ77	8.7e-14	48.62	uncharacterized protein LOC103501580 OS=Cucumis melo OX=3656 GN=LOC103501580 PE=...	[more]

BLAST of Lcy11g013830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903026.1	1.8e-34	72.88	PREDICTED: uncharacterized protein LOC103501581 [Cucumis melo] >KAA0033990.1 DUF...	[more]
KAG6600784.1	9.2e-34	77.78	hypothetical protein SDJN03_06017, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_011652736.1	2.8e-30	68.70	uncharacterized protein LOC105435072 [Cucumis sativus] >KGN56121.1 hypothetical ...	[more]
XP_038904231.1	3.0e-16	53.21	uncharacterized protein LOC120090574 [Benincasa hispida]	[more]
XP_008463409.1	1.8e-13	48.62	PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo] >TYK02554.1 DUF42...	[more]

BLAST of Lcy11g013830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21920.1	2.1e-04	31.85	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33647:SF5	OS01G0793900 PROTEIN	coord: 1..107
None	No IPR available	PANTHER	PTHR33647	OS01G0793900 PROTEIN	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g013830.1	Lcy11g013830.1	mRNA