Lcy11g013370 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g013370
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein LHCP TRANSLOCATION DEFECT
Location	Chr11: 20911744 .. 20914314 (-)
RNA-Seq Expression	Lcy11g013370
Synteny	Lcy11g013370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGATTCAACTTTTGAATTAATCCACATTTATATATTGTAAGGATTAGGCCATCAAAGCCCCTCATCATCGCCACTCATCAGACGTTTTCATCTCTCTCAAAATCCATCCAACGTCCTGGATCTCTTCTCAAAACCAATCCCTTCATCTCATTGGCCCACCAAATTCCGAGTGGATGGATAGAACCTGCAAGAGTGCGAGCAAGAGCACATTTCGTCTTACAAAACTTGCAGATACTCAGCCATGGCTTCCGTCACCTGCACTACCTCCATAAATCTCACCCCAAGACCCTTCAATTCTCGGCCCCCATCGAAATTGGGTTCCCAGTTTCTTGGTTTTCAATCGAAGCTCCGATGGGTCTCGCCCGTCGCCATTGGACCCTCCAATGGGTCTAGAGCTACGTGCTGGTTCAATTTTAGGTCAAATGCCGAAAGTGCCGGCATTTACGGCAGCCAGTCCCGAGATGACTTCAATAGAGACGATGTTGAGCAGGTTTTTTCTCTACTGTCTTATTTATTTGTACTTGTGTGATTGTGGATTTCTGGTTATTGTTGAAGTAGGTGCTTGTTTCATTTCTGGTTTGGGGCTAATTCTGATGATTTGGAAGTTTAAATTGTTCTTACCCTTTTGCTGTTTTACTGCTGAACTTGCTGTTTTGTTTTCTTTTTCTCTTTCTTGTAGCTGAGTAAAGGGAGGTTTACTTGTTTGTAGTTTATGATAATGTATGTTGTAATTAATATTATGGTGTTTAGTTTGTCAAGTCACTAATCCAAGAACCTTAGAACCATGAAGCTATTGTTTTTGTTTTTAAGAATTTGGAAGCCTGTTTGAAACCTTTTCAAAGATTTGTTTCTTGGTTTTTGATAAGTGAAACACTAATCGAAGTAAATATAGGTATAAATAGATTTCATGAGGTTAGTAATATAAAACAAAGAAAACATAATTGTTATGAGACATGGCCTTGGAAATTTGAATAATAATCTTGATTGACAAGGCTTGAAACATAGAATAGTGATAGTCTGATACTATGAAACGAGGTGGAAATGATTTAATCAAAAGGAGTAATGTGTAGAAATGTGCAAAATGTTGTTTGAATATGGCAGTCCCATTGGAGGGATTGGATATGACAAGAAAACTCCAATTTGAATTTTTAAGACTCTTTAGTGAAACCAGATGAAGGGATTTAAATTGATGGCGGTGTTCGCATGGTCAAAATGAGAAAAGCCTTTGTAATGTGAGAATATTGTGAGGGAAGAGACCTTAAACATTGTAGCCTCATAACTTGTGCAAATGCTTGGTTAAGTAACTTTACTTTTACATGATTAAACTAAAAATGGTGTTACGTTCTGAAAGTTGCATAGAACTTTTGACTTCCCTCGAACAGAACTGCAAACATTACTGTAGAAATTTCTTGGGTATGTAAGGGAAGAAGCAAAAGTATTCCTTCATCCTTGTGTCTCCTTTTGCTTTGGAAATGTGCTGAATGATCTTGTCCATAGTTTAAGAACTCGGCCGAGTCGTATTTATCTTAGGGCATGTTTAAGAGTGGTTTTAGAACTAGTGATTTTAATAGCAATGATTGTTCATAAGAGATTTATGAAAAGATATAATCATTTTAATGTTTGAAATGACTATACATTTTTAAAAGTGATTTTTGTTCCATCGAAAGTGATTTTGGGCATGACAAAAAGGTTTTTGGTCATTCCAAAATCACTCCCAAACATGTTCTTAGTATGTAACAAGATGAGAACAATATACCATATGAAAAATGATGACTCGTAAACATAGTGGCTTCATTTGACTCGAAGTGTATTGGTTGTGACGTGAGATGACTCCCATTGTATCATGCTTTTTTCAAGTAGATGACTTATGATGAATAATAATAAAAAAATCATTAATTATAGGAAAAATCAACTAACTTATGAGTTATGATAGAATGTATTTTTTTTAATTATCTTATCCTGGTATTAAGTTACAACTTGTCACTTAAGATTCTGTCGATACTTTCTTATTCAATAGTTGATACCAAAAACTCTGAACCATGACCTTGATCATTCCTAGAATGAAGTTTTGAAAGGAAAAGGAGAATTTACAAGTGAACAATTTGGTTGTGCAGTATTTCAACTACATGGGAATGCTGGCTGTAGAGGGTACATATGACAAAATGGAGGCTCTATTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGTTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAAGAGCTCCTGAGAGCTGGAGCTAAGTATGATGTGAAAGATGTAGATGGCCGAACTGCCATTGATAGGGCTCCTAATGAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTCCAAAAGGCATGATTTGGTCTCTAAGTTTAGCTTCTATTTGTTCTTTTTTGTTTTTTTTTCTTTTTCTGGGAGTGGCGCTATTTTGATAATGATAGGTTTAGAAAGAGGCTTAAGATTTGTATTCCACTGCCTTCATATTGTATTTAAATGGCATACCCTATTTTCATCCATTAAGGAATGGCTTCTAGATCAAAAATCTTGTGTATAA

mRNA sequence

AAAAGATTCAACTTTTGAATTAATCCACATTTATATATTGTAAGGATTAGGCCATCAAAGCCCCTCATCATCGCCACTCATCAGACGTTTTCATCTCTCTCAAAATCCATCCAACGTCCTGGATCTCTTCTCAAAACCAATCCCTTCATCTCATTGGCCCACCAAATTCCGAGTGGATGGATAGAACCTGCAAGAGTGCGAGCAAGAGCACATTTCGTCTTACAAAACTTGCAGATACTCAGCCATGGCTTCCGTCACCTGCACTACCTCCATAAATCTCACCCCAAGACCCTTCAATTCTCGGCCCCCATCGAAATTGGGTTCCCAGTTTCTTGGTTTTCAATCGAAGCTCCGATGGGTCTCGCCCGTCGCCATTGGACCCTCCAATGGGTCTAGAGCTACGTGCTGGTTCAATTTTAGGTCAAATGCCGAAAGTGCCGGCATTTACGGCAGCCAGTCCCGAGATGACTTCAATAGAGACGATGTTGAGCAGTATTTCAACTACATGGGAATGCTGGCTGTAGAGGGTACATATGACAAAATGGAGGCTCTATTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGTTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAAGAGCTCCTGAGAGCTGGAGCTAAGTATGATGTGAAAGATGTAGATGGCCGAACTGCCATTGATAGGGCTCCTAATGAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTCCAAAAGGCATGATTTGGTCTCTAAGTTTAGCTTCTATTTGTTCTTTTTTGTTTTTTTTTCTTTTTCTGGGAGTGGCGCTATTTTGATAATGATAGGTTTAGAAAGAGGCTTAAGATTTGTATTCCACTGCCTTCATATTGTATTTAAATGGCATACCCTATTTTCATCCATTAAGGAATGGCTTCTAGATCAAAAATCTTGTGTATAA

Coding sequence (CDS)

ATGGCTTCCGTCACCTGCACTACCTCCATAAATCTCACCCCAAGACCCTTCAATTCTCGGCCCCCATCGAAATTGGGTTCCCAGTTTCTTGGTTTTCAATCGAAGCTCCGATGGGTCTCGCCCGTCGCCATTGGACCCTCCAATGGGTCTAGAGCTACGTGCTGGTTCAATTTTAGGTCAAATGCCGAAAGTGCCGGCATTTACGGCAGCCAGTCCCGAGATGACTTCAATAGAGACGATGTTGAGCAGTATTTCAACTACATGGGAATGCTGGCTGTAGAGGGTACATATGACAAAATGGAGGCTCTATTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGTTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAAGAGCTCCTGAGAGCTGGAGCTAAGTATGATGTGAAAGATGTAGATGGCCGAACTGCCATTGATAGGGCTCCTAATGAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTCCAAAAGGCATGA

Protein sequence

MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA

Homology

[Close]

BLAST of Lcy11g013370 vs. ExPASy Swiss-Prot
Match: Q8VY88 (Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana OX=3702 GN=LTD PE=1 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-55
Identity = 111/169 (65.68%), Postives = 130/169 (76.92%), Query Frame = 0


Query: 3   SVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSN- 62
           S +C  S+  +     S  P  L S+FLG ++    + P  +GPSNGSR TCWF F  N 
Sbjct: 7   SFSCAPSLATSLFSTTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKNG 66

Query: 63  --AESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 122
             AE+AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILLMLAA
Sbjct: 67  VDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAA 126

Query: 123 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA 169
           +EGD+PK+EELL+AGA Y VKD DGRTAIDRA +EEI+D IL +S QKA
Sbjct: 127 TEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175

[Close]

BLAST of Lcy11g013370 vs. ExPASy Swiss-Prot
Match: A2YLX7 (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica OX=39946 GN=LTD PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.1e-47
Identity = 105/175 (60.00%), Postives = 129/175 (73.71%), Query Frame = 0


Query: 1   MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSP---VAIGPSNGS---RATC 60
           MAS+ CT  ++      ++   ++   +     ++L W+ P    A+ P++ S     TC
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPR---AAARLGWLRPSRLSAVVPASESGRVGPTC 60

Query: 61  WFNF-RSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDI 120
           +F F   +AE AGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVDI
Sbjct: 61  FFKFGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVDI 120

Query: 121 LLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA 169
           LLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTA+DRA  ++ ++FIL F+   A
Sbjct: 121 LLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAA-DDTREFILGFAATLA 171

[Close]

BLAST of Lcy11g013370 vs. ExPASy Swiss-Prot
Match: A3BKF2 (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica OX=39947 GN=LTD PE=2 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.1e-47
Identity = 105/175 (60.00%), Postives = 129/175 (73.71%), Query Frame = 0


Query: 1   MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSP---VAIGPSNGS---RATC 60
           MAS+ CT  ++      ++   ++   +     ++L W+ P    A+ P++ S     TC
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPR---AAARLGWLRPSRLSAVVPASESGRVGPTC 60

Query: 61  WFNF-RSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDI 120
           +F F   +AE AGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVDI
Sbjct: 61  FFKFGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVDI 120

Query: 121 LLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA 169
           LLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTA+DRA  ++ ++FIL F+   A
Sbjct: 121 LLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAA-DDTREFILGFAATLA 171

[Close]

BLAST of Lcy11g013370 vs. ExPASy TrEMBL
Match: A0A0A0L309 (ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078250 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.7e-80
Identity = 150/168 (89.29%), Postives = 157/168 (93.45%), Query Frame = 0


Query: 1   MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRS 60
           MAS++CT+SINLTPR FNSRPP KLGS FLG QS LRW+SPV+IGPSNGSRATCWFN R 
Sbjct: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60

Query: 61  NAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAE AGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA 169
           EGDKPKLEELLRAGA YDVKDVDGRTA+DRA NEEIKDFILNFS +KA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168

[Close]

BLAST of Lcy11g013370 vs. ExPASy TrEMBL
Match: A0A6J1JAV9 (protein LHCP TRANSLOCATION DEFECT OS=Cucurbita maxima OX=3661 GN=LOC111483311 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 4.9e-80
Identity = 153/168 (91.07%), Postives = 158/168 (94.05%), Query Frame = 0


Query: 1   MASVTCT-TSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFR 60
           MASV+CT TSINL+P  FNSRPP KLGSQFLG QS LRWVSP+AIGPSNGSRATCWFN R
Sbjct: 1   MASVSCTSTSINLSPASFNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  SNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
            NAE AGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQK 168
           SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]

BLAST of Lcy11g013370 vs. ExPASy TrEMBL
Match: A0A6J1EVN2 (protein LHCP TRANSLOCATION DEFECT OS=Cucurbita moschata OX=3662 GN=LOC111438495 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.4e-79
Identity = 152/168 (90.48%), Postives = 157/168 (93.45%), Query Frame = 0


Query: 1   MASVTCT-TSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFR 60
           MASV+CT TSINL+P   NSRPP KLGSQFLG QS LRWVSP+AIGPSNGSRATCWFN R
Sbjct: 1   MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  SNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
            NAE AGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQK 168
           SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]

BLAST of Lcy11g013370 vs. ExPASy TrEMBL
Match: A0A5D3BT07 (Protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00530 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 7.1e-79
Identity = 149/168 (88.69%), Postives = 155/168 (92.26%), Query Frame = 0


Query: 1   MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRS 60
           MAS++CTTSINLTPR FNSRPP KL S FLG QS LRW+SP++IGPSNGSRATCWFN R 
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 61  NAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAE AGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA 169
           EGDKPKLEELLRAGA YDVKDVDGRTAIDRA NEEIKDFIL FS +KA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

[Close]

BLAST of Lcy11g013370 vs. ExPASy TrEMBL
Match: A0A1S3CJ75 (protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo OX=3656 GN=LOC103501599 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 7.1e-79
Identity = 149/168 (88.69%), Postives = 155/168 (92.26%), Query Frame = 0


Query: 1   MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRS 60
           MAS++CTTSINLTPR FNSRPP KL S FLG QS LRW+SP++IGPSNGSRATCWFN R 
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 61  NAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAE AGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA 169
           EGDKPKLEELLRAGA YDVKDVDGRTAIDRA NEEIKDFIL FS +KA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

[Close]

BLAST of Lcy11g013370 vs. NCBI nr
Match: XP_038903413.1 (protein LHCP TRANSLOCATION DEFECT [Benincasa hispida])

HSP 1 Score: 308.9 bits (790), Expect = 2.7e-80
Identity = 152/168 (90.48%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRS 60
           MAS++CT S+NLTPR FNSRPP KL SQFLG QS LRWVSPVAIGPSNGSRATCWFN R 
Sbjct: 1   MASLSCTNSMNLTPRSFNSRPPFKLSSQFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQ 60

Query: 61  NAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAE AGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA 169
           EGDKPKLEELLRAGA YDVKDVDGRTAIDRAPNEEIKDFILN SV+ A
Sbjct: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNLSVKNA 168

[Close]

BLAST of Lcy11g013370 vs. NCBI nr
Match: XP_004152919.1 (protein LHCP TRANSLOCATION DEFECT [Cucumis sativus] >KGN56143.1 hypothetical protein Csa_010871 [Cucumis sativus])

HSP 1 Score: 307.4 bits (786), Expect = 7.7e-80
Identity = 150/168 (89.29%), Postives = 157/168 (93.45%), Query Frame = 0


Query: 1   MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRS 60
           MAS++CT+SINLTPR FNSRPP KLGS FLG QS LRW+SPV+IGPSNGSRATCWFN R 
Sbjct: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60

Query: 61  NAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAE AGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA 169
           EGDKPKLEELLRAGA YDVKDVDGRTA+DRA NEEIKDFILNFS +KA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168

[Close]

BLAST of Lcy11g013370 vs. NCBI nr
Match: XP_022985270.1 (protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima])

HSP 1 Score: 307.0 bits (785), Expect = 1.0e-79
Identity = 153/168 (91.07%), Postives = 158/168 (94.05%), Query Frame = 0


Query: 1   MASVTCT-TSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFR 60
           MASV+CT TSINL+P  FNSRPP KLGSQFLG QS LRWVSP+AIGPSNGSRATCWFN R
Sbjct: 1   MASVSCTSTSINLSPASFNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  SNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
            NAE AGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQK 168
           SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]

BLAST of Lcy11g013370 vs. NCBI nr
Match: XP_022932181.1 (protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata])

HSP 1 Score: 304.7 bits (779), Expect = 5.0e-79
Identity = 152/168 (90.48%), Postives = 157/168 (93.45%), Query Frame = 0


Query: 1   MASVTCT-TSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFR 60
           MASV+CT TSINL+P   NSRPP KLGSQFLG QS LRWVSP+AIGPSNGSRATCWFN R
Sbjct: 1   MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  SNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
            NAE AGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQK 168
           SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]

BLAST of Lcy11g013370 vs. NCBI nr
Match: XP_023520446.1 (protein LHCP TRANSLOCATION DEFECT [Cucurbita pepo subsp. pepo])

HSP 1 Score: 304.3 bits (778), Expect = 6.5e-79
Identity = 151/168 (89.88%), Postives = 157/168 (93.45%), Query Frame = 0


Query: 1   MASVTCT-TSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFR 60
           MASV+CT TSINL+P  FNSRPP KLGSQFLG QS  RWVSP+AIGPSNGSRATCWFN R
Sbjct: 1   MASVSCTSTSINLSPTSFNSRPPLKLGSQFLGLQSNFRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  SNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
            NAE AGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQK 168
           SEGDKPKLEELL+AGAKYDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Sbjct: 121 SEGDKPKLEELLKAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

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BLAST of Lcy11g013370 vs. TAIR 10
Match: AT1G50900.1 (Ankyrin repeat family protein )

HSP 1 Score: 217.6 bits (553), Expect = 7.5e-57
Identity = 111/169 (65.68%), Postives = 130/169 (76.92%), Query Frame = 0


Query: 3   SVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSN- 62
           S +C  S+  +     S  P  L S+FLG ++    + P  +GPSNGSR TCWF F  N 
Sbjct: 7   SFSCAPSLATSLFSTTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKNG 66

Query: 63  --AESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 122
             AE+AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILLMLAA
Sbjct: 67  VDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAA 126

Query: 123 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA 169
           +EGD+PK+EELL+AGA Y VKD DGRTAIDRA +EEI+D IL +S QKA
Sbjct: 127 TEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175

The following BLAST results are available for this feature:

BLAST of Lcy11g013370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VY88	1.1e-55	65.68	Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana OX=3702 GN=LTD PE=1 SV...	[more]
A2YLX7	3.1e-47	60.00	Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica OX=39946 GN=LTD ...	[more]
A3BKF2	3.1e-47	60.00	Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica OX=39947 GN=LT...	[more]

BLAST of Lcy11g013370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L309	3.7e-80	89.29	ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078...	[more]
A0A6J1JAV9	4.9e-80	91.07	protein LHCP TRANSLOCATION DEFECT OS=Cucurbita maxima OX=3661 GN=LOC111483311 PE...	[more]
A0A6J1EVN2	2.4e-79	90.48	protein LHCP TRANSLOCATION DEFECT OS=Cucurbita moschata OX=3662 GN=LOC111438495 ...	[more]
A0A5D3BT07	7.1e-79	88.69	Protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3CJ75	7.1e-79	88.69	protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo OX=3656 GN=LOC103501599 PE=4 S...	[more]

BLAST of Lcy11g013370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903413.1	2.7e-80	90.48	protein LHCP TRANSLOCATION DEFECT [Benincasa hispida]	[more]
XP_004152919.1	7.7e-80	89.29	protein LHCP TRANSLOCATION DEFECT [Cucumis sativus] >KGN56143.1 hypothetical pro...	[more]
XP_022985270.1	1.0e-79	91.07	protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima]	[more]
XP_022932181.1	5.0e-79	90.48	protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata]	[more]
XP_023520446.1	6.5e-79	89.88	protein LHCP TRANSLOCATION DEFECT [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy11g013370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50900.1	7.5e-57	65.68	Ankyrin repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036770	Ankyrin repeat-containing domain superfamily	GENE3D	1.25.40.20		coord: 90..167 e-value: 4.0E-6 score: 28.5
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	48403	Ankyrin repeat	coord: 90..160
IPR044242	Protein LHCP TRANSLOCATION DEFECT-like	PANTHER	PTHR47317	PROTEIN LHCP TRANSLOCATION DEFECT	coord: 1..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g013370.1	Lcy11g013370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090391	granum assembly
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma