Lcy11g013200 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g013200
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr11: 20549710 .. 20550475 (-)
RNA-Seq Expression	Lcy11g013200
Synteny	Lcy11g013200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGTGATGAAGAAGGTTTGGTTAGATTTTATTCCCAAGATCAAGAGTTTGTTTGATGCGTGCAAGGATGGATGGAATCTGAAAGACTACTGGGACACTATGAGAGACCTTTTAGACGACAACAACCTCAGTACAGGGGCTCAAATCATGTGGGGATTTTTGGAATATCAGAAACGAAGTAAAACTAAAAGGGAATCAGCCACATTACTCCCAAATCAGAAGGGAAATCATCGTAAAGCTCGAGCTCCCAAAGATTTCAAAGAAGAATTACCTGGATTCGAGCACGACGGAGAACCCCACGAGTCACAAGTGTTGGAAACCTCCTATAACAACCACTGAAACTCAATTTGGACGCCTCTTGGTTTGATGAGAGGTTGAAGGTGGGCGGCATCGGTGGGCCATTCGCGACTCCTCGGGTTCTCTGATCGGGGCGGGCTGCAAGAAGATTCCATTTTGCAGCAACATCAAATGGCTGGAATTGAAAGCTATAGAAGAAGGTTTGAAGATCATCACCTGGAATTGTTTCGCGGATGGTTCCAACACGGGGCCTCGGGTGGAGGTGGAGTCCGATGCTTCGGAGGTCGTCAAGGCGCTCAATAGAGACATCGAAGATTTATCAGAATCCTCTTCGTTGATCGAGGATATTAAGGCGTTTGGCCCTCGTGCGAATGTAGCTTCTTTTGCTTATTGTAACCTCCTAGATAATAGTTTGGCGCACAATTTGGCGCTGTGCGGCAGCTGTTCATGGCGATTTCATGTATAG

mRNA sequence

ATGCAAGTGATGAAGAAGGTTTGGTTAGATTTTATTCCCAAGATCAAGAGTTTGTTTGATGCGTGCAAGGATGGATGGAATCTGAAAGACTACTGGGACACTATGAGAGACCTTTTAGACGACAACAACCTCAGTACAGGGGCTCAAATCATGTGGGGATTTTTGGAATATCAGAAACGAAGTGGGCGGCATCGGTGGGCCATTCGCGACTCCTCGGGTTCTCTGATCGGGGCGGGCTGCAAGAAGATTCCATTTTGCAGCAACATCAAATGGCTGGAATTGAAAGCTATAGAAGAAGGTTTGAAGATCATCACCTGGAATTGTTTCGCGGATGGTTCCAACACGGGGCCTCGGGTGGAGGTGGAGTCCGATGCTTCGGAGGTCGTCAAGGCGCTCAATAGAGACATCGAAGATTTATCAGAATCCTCTTCGTTGATCGAGGATATTAAGGCGTTTGGCCCTCGTGCGAATGTAGCTTCTTTTGCTTATTGTAACCTCCTAGATAATAGTTTGGCGCACAATTTGGCGCTGTGCGGCAGCTGTTCATGGCGATTTCATGTATAG

Coding sequence (CDS)

ATGCAAGTGATGAAGAAGGTTTGGTTAGATTTTATTCCCAAGATCAAGAGTTTGTTTGATGCGTGCAAGGATGGATGGAATCTGAAAGACTACTGGGACACTATGAGAGACCTTTTAGACGACAACAACCTCAGTACAGGGGCTCAAATCATGTGGGGATTTTTGGAATATCAGAAACGAAGTGGGCGGCATCGGTGGGCCATTCGCGACTCCTCGGGTTCTCTGATCGGGGCGGGCTGCAAGAAGATTCCATTTTGCAGCAACATCAAATGGCTGGAATTGAAAGCTATAGAAGAAGGTTTGAAGATCATCACCTGGAATTGTTTCGCGGATGGTTCCAACACGGGGCCTCGGGTGGAGGTGGAGTCCGATGCTTCGGAGGTCGTCAAGGCGCTCAATAGAGACATCGAAGATTTATCAGAATCCTCTTCGTTGATCGAGGATATTAAGGCGTTTGGCCCTCGTGCGAATGTAGCTTCTTTTGCTTATTGTAACCTCCTAGATAATAGTTTGGCGCACAATTTGGCGCTGTGCGGCAGCTGTTCATGGCGATTTCATGTATAG

Protein sequence

MQVMKKVWLDFIPKIKSLFDACKDGWNLKDYWDTMRDLLDDNNLSTGAQIMWGFLEYQKRSGRHRWAIRDSSGSLIGAGCKKIPFCSNIKWLELKAIEEGLKIITWNCFADGSNTGPRVEVESDASEVVKALNRDIEDLSESSSLIEDIKAFGPRANVASFAYCNLLDNSLAHNLALCGSCSWRFHV

Homology

[Close]

BLAST of Lcy11g013200 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-06
Identity = 38/113 (33.63%), Postives = 60/113 (53.10%), Query Frame = 0


Query: 66  WAIRDSSGSLIGAGCKKIPFCSNIKWLELKAIEEGLKIITWNCFADGSNTG--PRVEVES 125
           W IR   G ++ AG + +  C+N+K LE  AI EGL+ +T        N G    + +E+
Sbjct: 98  WIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLT--------NLGVLRPLHIET 157

Query: 126 DASEVVKALNRDIEDLSESSSLIEDIKAFGPRANVASFAYCNLLDNSLAHNLA 177
           D++EV   LNR  EDL+++  ++E+I        + +FA      N  AH+LA
Sbjct: 158 DSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVGRETNGCAHSLA 202

[Close]

BLAST of Lcy11g013200 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 36/112 (32.14%), Postives = 57/112 (50.89%), Query Frame = 0


Query: 66  WAIRDSSGSLIGAGCKKIPFCSNIKWLELKAIEEGLKIITW-NCFADGSNTGPRVEVESD 125
           W +RD  G +I A C+ I    NI +LE+ AI EGL+ I   +C          + +ESD
Sbjct: 106 WILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESD 165

Query: 126 ASEVVKALNRDIEDLSESSSLIEDIKAFGPRANVASFAYCNLLDNSLAHNLA 177
           + E +  L+R  +D +E   L+E+I        + S  + +   N +AH+LA
Sbjct: 166 SLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLA 217

[Close]

BLAST of Lcy11g013200 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.9e-04
Identity = 36/111 (32.43%), Postives = 56/111 (50.45%), Query Frame = 0


Query: 66  WAIRDSSGSLIGAGCKKIPFCSNIKWLELKAIEEGLKIITWNCFADGSNTGPRVEVESDA 125
           W +RD  G +I A C+ I    NI +LE+ AI EGL+ I         +  P + +ESD+
Sbjct: 106 WILRDEKGEVIKASCRIIRAERNITYLEVMAICEGLRAIR------QEHCRP-IHLESDS 165

Query: 126 SEVVKALNRDIEDLSESSSLIEDIKAFGPRANVASFAYCNLLDNSLAHNLA 177
            E +  L+R  +D +E   L+E+I        + S  + +   N +AH LA
Sbjct: 166 LEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHISREANKVAHGLA 209

[Close]

BLAST of Lcy11g013200 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 4.8e-06
Identity = 38/113 (33.63%), Postives = 60/113 (53.10%), Query Frame = 0


Query: 66  WAIRDSSGSLIGAGCKKIPFCSNIKWLELKAIEEGLKIITWNCFADGSNTG--PRVEVES 125
           W IR   G ++ AG + +  C+N+K LE  AI EGL+ +T        N G    + +E+
Sbjct: 98  WIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLT--------NLGVLRPLHIET 157

Query: 126 DASEVVKALNRDIEDLSESSSLIEDIKAFGPRANVASFAYCNLLDNSLAHNLA 177
           D++EV   LNR  EDL+++  ++E+I        + +FA      N  AH+LA
Sbjct: 158 DSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVGRETNGCAHSLA 202

[Close]

BLAST of Lcy11g013200 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 2.6e-04
Identity = 36/112 (32.14%), Postives = 57/112 (50.89%), Query Frame = 0


Query: 66  WAIRDSSGSLIGAGCKKIPFCSNIKWLELKAIEEGLKIITW-NCFADGSNTGPRVEVESD 125
           W +RD  G +I A C+ I    NI +LE+ AI EGL+ I   +C          + +ESD
Sbjct: 106 WILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESD 165

Query: 126 ASEVVKALNRDIEDLSESSSLIEDIKAFGPRANVASFAYCNLLDNSLAHNLA 177
           + E +  L+R  +D +E   L+E+I        + S  + +   N +AH+LA
Sbjct: 166 SLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLA 217

The following BLAST results are available for this feature:

BLAST of Lcy11g013200 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g013200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	2.3e-06	33.63	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DSV1	1.3e-04	32.14	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1CP26	4.9e-04	32.43	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of Lcy11g013200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	4.8e-06	33.63	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022156777.1	2.6e-04	32.14	uncharacterized protein LOC111023608 [Momordica charantia]	[more]

BLAST of Lcy11g013200 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 56..176 e-value: 3.3E-12 score: 46.3
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 66..176 e-value: 4.07746E-9 score: 50.3904

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g013200.1	Lcy11g013200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity