Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCACAGACAAATGAAGGAAGGAACCATGGAAAGAAAGGGCACCACAATCAAGAAATTCATTCTTGTTACGCTAACTCATGCGGATAGAAGACCTACCGCAAAGAAGGAGTTGGTGAGAGACCGGCTTAGGCAACTATTCGACAGTCGGGCCGTTCTAGTGACAAAGGAACCACATAGTGAAGGTGGGTATCACCTTCATGCAGGGGTATTCAACGGGAATGCCTCCAAGCATACTGCCACTAAGAATATAAGAGAGTGCTTTACCTAGTGGGAGGGCAGAGCACTCGATGTGAAATTTAACAAGGCCTGGGCCCCCATATGGTTGTATCTCATCAAAGAAGATAAGGAGCTGCTTGTCTGGGGGGAATACACATTAGAAGAAATAATGAAAATTGTAGACAGACGGAAAAAGCGCAATCAGTCTCAGAAGAGTCAGCCAGAGCAAGTCATAGACAAGCTTCTCAAATGTCACGATTGGTACCAAATCTACAATGATCCGGTCTTAAGGAAGCTTGCCGTGCAGTCCTATGAGAGCATTCGGAATCTATACGAGGATCCGCAGGTAGTTCGAGATATGCAAACCACTTTGGGAGAGATATTTCTATATTCTTTTTAG
mRNA sequence
ATGGAGCACAGACAAATGAAGGAAGGAACCATGGAAAGAAAGGGCACCACAATCAAGAAATTCATTCTTGTTACGCTAACTCATGCGGATAGAAGACCTACCGCAAAGAAGGAGTTGGTGAGAGACCGGCTTAGGCAACTATTCGACAGTCGGGCCGTTCTAGTGACAAAGGAACCACATAGTGAAGGTGGAGCACTCGATGTGAAATTTAACAAGGCCTGGGCCCCCATATGGTTGTATCTCATCAAAGAAGATAAGGAGCTGCTTGTCTGGGGGGAATACACATTAGAAGAAATAATGAAAATTGTAGACAGACGGAAAAAGCGCAATCAGTCTCAGAAGAGTCAGCCAGAGCAAGTCATAGACAAGCTTCTCAAATGTCACGATTGGTACCAAATCTACAATGATCCGGTCTTAAGGAAGCTTGCCGTGCAGTCCTATGAGAGCATTCGGAATCTATACGAGGATCCGCAGGTAGTTCGAGATATGCAAACCACTTTGGGAGAGATATTTCTATATTCTTTTTAG
Coding sequence (CDS)
ATGGAGCACAGACAAATGAAGGAAGGAACCATGGAAAGAAAGGGCACCACAATCAAGAAATTCATTCTTGTTACGCTAACTCATGCGGATAGAAGACCTACCGCAAAGAAGGAGTTGGTGAGAGACCGGCTTAGGCAACTATTCGACAGTCGGGCCGTTCTAGTGACAAAGGAACCACATAGTGAAGGTGGAGCACTCGATGTGAAATTTAACAAGGCCTGGGCCCCCATATGGTTGTATCTCATCAAAGAAGATAAGGAGCTGCTTGTCTGGGGGGAATACACATTAGAAGAAATAATGAAAATTGTAGACAGACGGAAAAAGCGCAATCAGTCTCAGAAGAGTCAGCCAGAGCAAGTCATAGACAAGCTTCTCAAATGTCACGATTGGTACCAAATCTACAATGATCCGGTCTTAAGGAAGCTTGCCGTGCAGTCCTATGAGAGCATTCGGAATCTATACGAGGATCCGCAGGTAGTTCGAGATATGCAAACCACTTTGGGAGAGATATTTCTATATTCTTTTTAG
Protein sequence
MEHRQMKEGTMERKGTTIKKFILVTLTHADRRPTAKKELVRDRLRQLFDSRAVLVTKEPHSEGGALDVKFNKAWAPIWLYLIKEDKELLVWGEYTLEEIMKIVDRRKKRNQSQKSQPEQVIDKLLKCHDWYQIYNDPVLRKLAVQSYESIRNLYEDPQVVRDMQTTLGEIFLYSF
Homology
BLAST of Lcy11g012880 vs. ExPASy TrEMBL
Match:
A0A7N0UNL0 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)
HSP 1 Score: 99.4 bits (246), Expect = 1.6e-17
Identity = 53/192 (27.60%), Postives = 94/192 (48.96%), Query Frame = 0
Query: 13 RKGTTIKKFILVTLTHADRRPTAKKELVRDRLRQLFDSRAVLVTKEPHS----------- 72
RK T+++FILVTL HA+ RP + R+R LF RA+ + KE H
Sbjct: 19 RKTKTVREFILVTLIHAENRPFTDTRTIISRVRDLFQCRAIAIAKEVHKSTEGDDSGEHF 78
Query: 73 -------------------------EGGALDVKFNKAWAPIWLYLIKEDKELLVWGEYTL 132
+G A+ + +K W I Y+ KED++ +VWGE+T
Sbjct: 79 HIGIWAMDASKNNLRKKIRSLFPEWKGRAIGISVHKGWGSICRYITKEDQKPIVWGEFTQ 138
Query: 133 EEIMKIVD-RRKKRNQSQKSQPEQVIDKLLKCHDWYQIYNDPVLRKLAVQSYESIRNLYE 168
++I+ I + +KK+ + + ++ K+ + DWYQ+Y D +L + ++ YE
Sbjct: 139 QQILSIAEAHKKKKAMNLEIGNLAILKKIEELEDWYQVYRDDILANRVLNHLPRMKEAYE 198
BLAST of Lcy11g012880 vs. ExPASy TrEMBL
Match:
A0A5C7GNV1 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027796 PE=4 SV=1)
HSP 1 Score: 93.2 bits (230), Expect = 1.2e-15
Identity = 52/165 (31.52%), Postives = 91/165 (55.15%), Query Frame = 0
Query: 8 EGTMERKGTTIKKFILVTLTHADRRPTAKKELVRDRLRQLFDSRAVLVTKEPHSEGGALD 67
E TM +T++ +I +TL+HA++ + E + ++ R++ P +G +
Sbjct: 54 ERTMVLAKSTLRLYISITLSHAEKGVVTQDENAKHNAAKII--RSIF----PEFDGVQCE 113
Query: 68 VKFNKAWAPIWLYLIKEDKELLVWGEYTLEEIMKIVDRRKKRNQSQKSQPEQVIDKLLKC 127
V+F K W + YL KEDK LVWGEYT E+I+ I + + + + V+D L KC
Sbjct: 114 VRFPKGWGRLCAYLTKEDKSPLVWGEYTREQILDISECSRHHKKDTTVPNQVVLDNLSKC 173
Query: 128 HDWYQIYNDPVLRKLAVQSYESIRNLYEDPQVVRDMQTTLGEIFL 173
DW+ IY++ VL +SY + + ++D +V++ ++T LG F+
Sbjct: 174 EDWFDIYSNEVLVNRLFRSYGT--SAFDDLKVLKQLRTPLGAKFI 210
BLAST of Lcy11g012880 vs. ExPASy TrEMBL
Match:
B9T9Z5 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_2118790 PE=4 SV=1)
HSP 1 Score: 89.0 bits (219), Expect = 2.2e-14
Identity = 51/157 (32.48%), Postives = 83/157 (52.87%), Query Frame = 0
Query: 13 RKGTTIKKFILVTLTHADRRPTAKKELVRDRLRQLFDSRAVLVTKEPHSEGGALDVKFNK 72
RK +I + V +A R AK ++R L P +G DVKF++
Sbjct: 18 RKEDSIFNHVAVKSDNASRNTAAK--IIRRAL--------------PEFDGAQCDVKFHR 77
Query: 73 AWAPIWLYLIKEDKELLVWGEYTLEEIMKIVDRRKKRNQSQKSQPEQVIDKLLKCHDWYQ 132
W + Y+ KEDK +VWGEY+L++IM+I +S+ + L KC+DWY+
Sbjct: 78 GWGILCSYVTKEDKNPVVWGEYSLDQIMEIA-------APVRSRINTLPTGLYKCNDWYE 137
Query: 133 IYNDPVLRKLAVQSYESIRNLYEDPQVVRDMQTTLGE 170
+Y L+ ++ Y +IRN++ED +V+++ + TLGE
Sbjct: 138 VYEQDSLKDRLMRGYNNIRNVFEDLRVLKEKKRTLGE 151
BLAST of Lcy11g012880 vs. ExPASy TrEMBL
Match:
A0A5D3BSH0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83326G00020 PE=4 SV=1)
HSP 1 Score: 78.2 bits (191), Expect = 3.8e-11
Identity = 47/171 (27.49%), Postives = 79/171 (46.20%), Query Frame = 0
Query: 30 DRRPTAKKELVRDRLRQLFDSRAVLVTKEPHS---------------------------- 89
+RR KE+ +R+R+LFD ++V KE H
Sbjct: 168 ERRKVQPKEM-EERIRKLFDCVCIVVAKERHQDGEKIHHHIAVLNENASKNQAIAKIREA 227
Query: 90 ----EGGALDVKFNKAWAPIWLYLIKEDKELLVWGEYTLEEIMKIVDRRKKRNQSQKSQP 149
EG DV F+K W + Y+ K+DK VWG++T+ +++ + ++K P
Sbjct: 228 LEEWEGRQCDVSFHKTWKSLCAYITKQDKAPYVWGKFTINQVLAEAKAARDHKSTRKITP 287
Query: 150 E-------QVIDKLLKCHDWYQIYNDPVLRKLAVQSYESIRNLYEDPQVVR 162
E ++ KL +C+D+ + DP L L + Y++IRNL+ED Q ++
Sbjct: 288 ETGEDKNQRIYAKLRQCNDFLALRKDPELADLLLLKYQTIRNLWEDEQSIK 337
BLAST of Lcy11g012880 vs. ExPASy TrEMBL
Match:
A0A5A7SZR2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43296G00060 PE=4 SV=1)
HSP 1 Score: 75.9 bits (185), Expect = 1.9e-10
Identity = 43/161 (26.71%), Postives = 74/161 (45.96%), Query Frame = 0
Query: 40 VRDRLRQLFDSRAVLVTKEPHS--------------------------------EGGALD 99
+ +R+R+LFD ++V KE H EG D
Sbjct: 1 MEERIRKLFDCVCIVVAKERHQDGEKIHHHIAVLNENASKNQAIAKIREALEEWEGRQCD 60
Query: 100 VKFNKAWAPIWLYLIKEDKELLVWGEYTLEEIMKIVDRRKKRNQSQKSQPE-------QV 159
V F+K W + Y+ K+DK VWG++T+ +++ + ++K PE ++
Sbjct: 61 VSFHKTWKSLCAYITKQDKAPYVWGKFTINQVLAEAKAARDHKSTRKITPETGEDKNQRI 120
Query: 160 IDKLLKCHDWYQIYNDPVLRKLAVQSYESIRNLYEDPQVVR 162
KL +C+D+ + DP L L + Y++IRNL+ED Q ++
Sbjct: 121 YAKLRQCNDFLALRKDPELADLLLLKYQTIRNLWEDEQSIK 161
BLAST of Lcy11g012880 vs. NCBI nr
Match:
KAF3452224.1 (hypothetical protein FNV43_RR08322 [Rhamnella rubrinervis])
HSP 1 Score: 125.2 bits (313), Expect = 5.7e-25
Identity = 59/126 (46.83%), Postives = 88/126 (69.84%), Query Frame = 0
Query: 62 EGGALDVKFNKAWAPIWLYLIKEDKELLVWGEYTLEEIMKIVDRRKKRNQS--------- 121
EG LDV+F++ W I YL+KED + LVWGEY+LEEI+ I ++N+
Sbjct: 90 EGRTLDVRFHRNWTSICKYLLKEDTQPLVWGEYSLEEILAIAAGASQKNKKATTSTPAEQ 149
Query: 122 ----QKSQPEQVIDKLLKCHDWYQIYNDPVLRKLAVQSYESIRNLYEDPQVVRDMQTTLG 175
+ + PE +I+KL +C+ WY+IYNDP+LRKL+V SY+S+RNLY+D +V+++ Q+TLG
Sbjct: 150 LQIMEATPPEIIIEKLERCNHWYEIYNDPILRKLSVHSYQSLRNLYDDLKVLQERQSTLG 209
BLAST of Lcy11g012880 vs. NCBI nr
Match:
TXG46227.1 (hypothetical protein EZV62_028258 [Acer yangbiense])
HSP 1 Score: 93.2 bits (230), Expect = 2.4e-15
Identity = 52/165 (31.52%), Postives = 91/165 (55.15%), Query Frame = 0
Query: 8 EGTMERKGTTIKKFILVTLTHADRRPTAKKELVRDRLRQLFDSRAVLVTKEPHSEGGALD 67
E TM +T++ +I +TL+HA++ + E + ++ R++ P +G +
Sbjct: 54 ERTMVLAKSTLRLYISITLSHAEKGVVTQDENAKHNAAKII--RSIF----PEFDGVQCE 113
Query: 68 VKFNKAWAPIWLYLIKEDKELLVWGEYTLEEIMKIVDRRKKRNQSQKSQPEQVIDKLLKC 127
V+F K W + YL KEDK LVWGEYT E+I+ I + + + + V+D L KC
Sbjct: 114 VRFPKGWGRLCAYLTKEDKSPLVWGEYTREQILDISECSRHHKKDTTVPNQVVLDNLSKC 173
Query: 128 HDWYQIYNDPVLRKLAVQSYESIRNLYEDPQVVRDMQTTLGEIFL 173
DW+ IY++ VL +SY + + ++D +V++ ++T LG F+
Sbjct: 174 EDWFDIYSNEVLVNRLFRSYGT--SAFDDLKVLKQLRTPLGAKFI 210
BLAST of Lcy11g012880 vs. NCBI nr
Match:
EEF27325.1 (conserved hypothetical protein [Ricinus communis])
HSP 1 Score: 89.0 bits (219), Expect = 4.5e-14
Identity = 51/157 (32.48%), Postives = 83/157 (52.87%), Query Frame = 0
Query: 13 RKGTTIKKFILVTLTHADRRPTAKKELVRDRLRQLFDSRAVLVTKEPHSEGGALDVKFNK 72
RK +I + V +A R AK ++R L P +G DVKF++
Sbjct: 18 RKEDSIFNHVAVKSDNASRNTAAK--IIRRAL--------------PEFDGAQCDVKFHR 77
Query: 73 AWAPIWLYLIKEDKELLVWGEYTLEEIMKIVDRRKKRNQSQKSQPEQVIDKLLKCHDWYQ 132
W + Y+ KEDK +VWGEY+L++IM+I +S+ + L KC+DWY+
Sbjct: 78 GWGILCSYVTKEDKNPVVWGEYSLDQIMEIA-------APVRSRINTLPTGLYKCNDWYE 137
Query: 133 IYNDPVLRKLAVQSYESIRNLYEDPQVVRDMQTTLGE 170
+Y L+ ++ Y +IRN++ED +V+++ + TLGE
Sbjct: 138 VYEQDSLKDRLMRGYNNIRNVFEDLRVLKEKKRTLGE 151
BLAST of Lcy11g012880 vs. NCBI nr
Match:
WP_131796644.1 (hypothetical protein [Candidatus Frankia datiscae])
HSP 1 Score: 85.5 bits (210), Expect = 5.0e-13
Identity = 48/140 (34.29%), Postives = 76/140 (54.29%), Query Frame = 0
Query: 11 MERKGTTIKKFILVTLTHADRRPTAKKELVRDRLRQLFDSRAVLVTKEPHSEGG------ 70
M+ K +T +K++L+TLTHAD RP +K V+DR+R +F+S A++V KE H E G
Sbjct: 1 MKAKISTTRKYVLLTLTHADMRPEIEKHHVKDRIRGVFESLAIVVVKESHEESGDHFHAG 60
Query: 71 -------------------------ALDVKFNKAWAPIWLYLIKEDKELLVWGEYTLEEI 117
A+DVKF+K W + Y++KED+E +WG+Y +++
Sbjct: 61 LIAKDASKHTATKKMRAGFPEWEGRAIDVKFHKGWGTVCAYVMKEDEEPCIWGQYKIDQF 120
BLAST of Lcy11g012880 vs. NCBI nr
Match:
TYK02125.1 (hypothetical protein E5676_scaffold83326G00020 [Cucumis melo var. makuwa])
HSP 1 Score: 78.2 bits (191), Expect = 7.9e-11
Identity = 47/171 (27.49%), Postives = 79/171 (46.20%), Query Frame = 0
Query: 30 DRRPTAKKELVRDRLRQLFDSRAVLVTKEPHS---------------------------- 89
+RR KE+ +R+R+LFD ++V KE H
Sbjct: 168 ERRKVQPKEM-EERIRKLFDCVCIVVAKERHQDGEKIHHHIAVLNENASKNQAIAKIREA 227
Query: 90 ----EGGALDVKFNKAWAPIWLYLIKEDKELLVWGEYTLEEIMKIVDRRKKRNQSQKSQP 149
EG DV F+K W + Y+ K+DK VWG++T+ +++ + ++K P
Sbjct: 228 LEEWEGRQCDVSFHKTWKSLCAYITKQDKAPYVWGKFTINQVLAEAKAARDHKSTRKITP 287
Query: 150 E-------QVIDKLLKCHDWYQIYNDPVLRKLAVQSYESIRNLYEDPQVVR 162
E ++ KL +C+D+ + DP L L + Y++IRNL+ED Q ++
Sbjct: 288 ETGEDKNQRIYAKLRQCNDFLALRKDPELADLLLLKYQTIRNLWEDEQSIK 337
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A7N0UNL0 | 1.6e-17 | 27.60 | Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1 | [more] |
A0A5C7GNV1 | 1.2e-15 | 31.52 | Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027796 PE=4 SV=1 | [more] |
B9T9Z5 | 2.2e-14 | 32.48 | Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_2118790 PE=4 SV=1 | [more] |
A0A5D3BSH0 | 3.8e-11 | 27.49 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7SZR2 | 1.9e-10 | 26.71 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAF3452224.1 | 5.7e-25 | 46.83 | hypothetical protein FNV43_RR08322 [Rhamnella rubrinervis] | [more] |
TXG46227.1 | 2.4e-15 | 31.52 | hypothetical protein EZV62_028258 [Acer yangbiense] | [more] |
EEF27325.1 | 4.5e-14 | 32.48 | conserved hypothetical protein [Ricinus communis] | [more] |
WP_131796644.1 | 5.0e-13 | 34.29 | hypothetical protein [Candidatus Frankia datiscae] | [more] |
TYK02125.1 | 7.9e-11 | 27.49 | hypothetical protein E5676_scaffold83326G00020 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |