Lcy11g012800 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g012800
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Autophagy-related protein 3
Location	Chr11: 18952130 .. 18952336 (+)
RNA-Seq Expression	Lcy11g012800
Synteny	Lcy11g012800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCTAAAACGGAAAAATCTAGGGCTGTGACGAATAATCTATCGCCATGCGATGTTGAAGCTCTCAGGAAATGTTTGCAGGAAAACAATGGCGATCGTATTAAGTGCGAGTCTCAAATACAGGCCTTCAAGTCTTCTTGCTCCCTAAAGAAACCTAATCCTTCTTCGCAATCTGGAAGGGACGACCTCGAGACTGCCGTTTGA

mRNA sequence

ATGGATGCTAAAACGGAAAAATCTAGGGCTGTGACGAATAATCTATCGCCATGCGATGTTGAAGCTCTCAGGAAATGTTTGCAGGAAAACAATGGCGATCGTATTAAGTGCGAGTCTCAAATACAGGCCTTCAAGTCTTCTTGCTCCCTAAAGAAACCTAATCCTTCTTCGCAATCTGGAAGGGACGACCTCGAGACTGCCGTTTGA

Coding sequence (CDS)

ATGGATGCTAAAACGGAAAAATCTAGGGCTGTGACGAATAATCTATCGCCATGCGATGTTGAAGCTCTCAGGAAATGTTTGCAGGAAAACAATGGCGATCGTATTAAGTGCGAGTCTCAAATACAGGCCTTCAAGTCTTCTTGCTCCCTAAAGAAACCTAATCCTTCTTCGCAATCTGGAAGGGACGACCTCGAGACTGCCGTTTGA

Protein sequence

MDAKTEKSRAVTNNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPSSQSGRDDLETAV

Homology

[Close]

BLAST of Lcy11g012800 vs. ExPASy TrEMBL
Match: A0A0A0L2G8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G081365 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.6e-21
Identity = 54/68 (79.41%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MDAKTEKSRAVTNNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPSSQSG 60
          MD  TEKSRAVT N SPCDVEAL+KCLQENNGDR+KCESQIQAF  SCSLKK NPS QSG
Sbjct: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQSG 60

Query: 61 RDDLETAV 69
          R+D +T V
Sbjct: 61 RNDFDTGV 68

[Close]

BLAST of Lcy11g012800 vs. ExPASy TrEMBL
Match: A0A6A4N3Q2 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr21g0305111 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.6e-13
Identity = 37/57 (64.91%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1  MDAKTEKSRAVTNNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPSS 58
          MD K E++++V   +S CDV+AL+KCL++N GD +KC+SQI+AFKSSCSLKKPNPSS
Sbjct: 1  MDQKVEENKSVKKIISACDVDALKKCLEDNKGDYVKCQSQIEAFKSSCSLKKPNPSS 57

[Close]

BLAST of Lcy11g012800 vs. ExPASy TrEMBL
Match: A0A5N6RFC3 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016259 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-12
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1  MDAKTEKSRAVTNNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPSSQSG 60
          MD + E S +    +SPCDVEAL+KCL+ENNGD +KC+SQI+AFKSSCSLKKPN SSQ  
Sbjct: 1  MDERAE-SNSAKKIMSPCDVEALKKCLEENNGDYVKCQSQIEAFKSSCSLKKPN-SSQES 60

Query: 61 RDDLET 67
             L+T
Sbjct: 61 EPQLKT 64

[Close]

BLAST of Lcy11g012800 vs. ExPASy TrEMBL
Match: A0A5N6RHF1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016259 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-12
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1  MDAKTEKSRAVTNNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPSSQSG 60
          MD + E S +    +SPCDVEAL+KCL+ENNGD +KC+SQI+AFKSSCSLKKPN SSQ  
Sbjct: 1  MDERAE-SNSAKKIMSPCDVEALKKCLEENNGDYVKCQSQIEAFKSSCSLKKPN-SSQES 60

Query: 61 RDDLET 67
             L+T
Sbjct: 61 EPQLKT 64

[Close]

BLAST of Lcy11g012800 vs. ExPASy TrEMBL
Match: B9RIW7 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1583260 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.1e-12
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 1  MDAKTEKSRAVTNNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPS 57
          MD K E S A    LSPCDVEAL+KCL+EN GD +KC+SQI+AFKSSCSLKKP PS
Sbjct: 1  MDEKGESSSA-KKVLSPCDVEALKKCLEENKGDYVKCQSQIEAFKSSCSLKKPTPS 55

[Close]

BLAST of Lcy11g012800 vs. NCBI nr
Match: KAE8650146.1 (hypothetical protein Csa_010997, partial [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 3.6e-20
Identity = 53/66 (80.30%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 1  MDAKTEKSRAVTNNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPSSQSG 60
          MD  TEKSRAVT N SPCDVEAL+KCLQENNGDR+KCESQIQAF  SCSLKK NPS QSG
Sbjct: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQSG 60

Query: 61 RDDLET 67
          R+D +T
Sbjct: 61 RNDFDT 66

[Close]

BLAST of Lcy11g012800 vs. NCBI nr
Match: KAF3954648.1 (hypothetical protein CMV_020027 [Castanea mollissima] >KAF3976702.1 hypothetical protein CMV_000104 [Castanea mollissima])

HSP 1 Score: 83.6 bits (205), Expect = 7.3e-13
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 1  MDAKTEKSRAVTNNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPSSQS 60
          MD K E S  V   +SPCDVEAL+KCL+EN GD +KC+SQI+AFKSSCS+KKPNPS +S
Sbjct: 1  MDQKAE-SNTVKKIMSPCDVEALKKCLEENKGDYVKCQSQIEAFKSSCSIKKPNPSQES 58

[Close]

BLAST of Lcy11g012800 vs. NCBI nr
Match: KAE9589066.1 (hypothetical protein Lalb_Chr21g0305111 [Lupinus albus])

HSP 1 Score: 83.6 bits (205), Expect = 7.3e-13
Identity = 37/57 (64.91%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1  MDAKTEKSRAVTNNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPSS 58
          MD K E++++V   +S CDV+AL+KCL++N GD +KC+SQI+AFKSSCSLKKPNPSS
Sbjct: 1  MDQKVEENKSVKKIISACDVDALKKCLEDNKGDYVKCQSQIEAFKSSCSLKKPNPSS 57

[Close]

BLAST of Lcy11g012800 vs. NCBI nr
Match: KAE8077725.1 (hypothetical protein FH972_016259 [Carpinus fangiana])

HSP 1 Score: 81.6 bits (200), Expect = 2.8e-12
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1  MDAKTEKSRAVTNNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPSSQSG 60
          MD + E S +    +SPCDVEAL+KCL+ENNGD +KC+SQI+AFKSSCSLKKPN SSQ  
Sbjct: 1  MDERAE-SNSAKKIMSPCDVEALKKCLEENNGDYVKCQSQIEAFKSSCSLKKPN-SSQES 60

Query: 61 RDDLET 67
             L+T
Sbjct: 61 EPQLKT 64

[Close]

BLAST of Lcy11g012800 vs. NCBI nr
Match: KAE8077726.1 (hypothetical protein FH972_016259 [Carpinus fangiana])

HSP 1 Score: 81.6 bits (200), Expect = 2.8e-12
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1  MDAKTEKSRAVTNNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPSSQSG 60
          MD + E S +    +SPCDVEAL+KCL+ENNGD +KC+SQI+AFKSSCSLKKPN SSQ  
Sbjct: 1  MDERAE-SNSAKKIMSPCDVEALKKCLEENNGDYVKCQSQIEAFKSSCSLKKPN-SSQES 60

Query: 61 RDDLET 67
             L+T
Sbjct: 61 EPQLKT 64

The following BLAST results are available for this feature:

BLAST of Lcy11g012800 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g012800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2G8	4.6e-21	79.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G081365 PE=4 SV=1	[more]
A0A6A4N3Q2	3.6e-13	64.91	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr21g0305111 PE=4 SV=1	[more]
A0A5N6RFC3	1.4e-12	63.64	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016259 PE=4 SV=1	[more]
A0A5N6RHF1	1.4e-12	63.64	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016259 PE=4 SV=1	[more]
B9RIW7	5.1e-12	71.43	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1583260 PE=4 SV=1	[more]

BLAST of Lcy11g012800 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650146.1	3.6e-20	80.30	hypothetical protein Csa_010997, partial [Cucumis sativus]	[more]
KAF3954648.1	7.3e-13	67.80	hypothetical protein CMV_020027 [Castanea mollissima] >KAF3976702.1 hypothetical...	[more]
KAE9589066.1	7.3e-13	64.91	hypothetical protein Lalb_Chr21g0305111 [Lupinus albus]	[more]
KAE8077725.1	2.8e-12	63.64	hypothetical protein FH972_016259 [Carpinus fangiana]	[more]
KAE8077726.1	2.8e-12	63.64	hypothetical protein FH972_016259 [Carpinus fangiana]	[more]

BLAST of Lcy11g012800 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..68
None	No IPR available	PANTHER	PTHR36856	OS07G0175200 PROTEIN	coord: 1..66
None	No IPR available	PANTHER	PTHR36856:SF1	OS07G0175200 PROTEIN	coord: 1..66
IPR009069	Cysteine alpha-hairpin motif superfamily	SUPERFAMILY	47072	Cysteine alpha-hairpin motif	coord: 14..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g012800.1	Lcy11g012800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
molecular_function	GO:0008168	methyltransferase activity