Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATATCCATGACATTGATAAGAGTTATAAGATATGGATTTGGCATGGTGAACAAGTACCTATTAGGGATAAGGATGAAAACGATCCTACTTGTGGTGATGAAGACTCTACTGAAAGTGATGATATAAGAAACACCACTAAGTTGTTTGAAGCTACACAAGGCTATTTTACAGATAAAGATGACAATTTTGACAAACTATTGAGTGATGCACAAAAACCTCTGTACTCAGGTTGTCAAAAATTTTCTAAAATATCCGCATTACTAAAATTATATATATAACTTGAAAGCCAAATACAGATGGAGTGATAAAAGTTTCACCGACTTGCTAACATTAGTTCATGACTTCCTACCAAATTCGAATGAGCTTCCAACTTTTGTGTATGAAGCAAAAAATGTCCTGTGTACTCTAGGAATGGATTATCAGAAGATTCATGCATGTGTCAATGATTGTGTCCTGTTTAGGAAAGGACTATCTGATGCAAATTCATGCCCAGGTTGTAAAACATCTAGATGGAAGCTTCGTATGAACTCAACTGAAGTTAAAAAAGGTATTCCGGCAAAGGTTATGTGGTGCTTTTCTCATATCCCTCGATTCCAACGCATGTTTCGACGTGCAGAGATGTCAAAATTATTAACTTGGCATGCTGAAGGAAGGAAAAAAGATGGATTTCTACGACATCAAATAGATTCGCCAGCTTGGAAATTAGTAGACGACATGTGGCCGGAATTTGGTTCTAAGTCAAGAAATCTTCGTTTAGCTAGCTCAACTGATGGAATCAATCCTCATGGTGACCTTAGTAGTAGATAA
mRNA sequence
ATGTATATCCATGACATTGATAAGAGTTATAAGATATGGATTTGGCATGGTGAACAAGTACCTATTAGGGATAAGGATGAAAACGATCCTACTTGTGGTGATGAAGACTCTACTGAAAGTGATGATATAAGAAACACCACTAAGTTGTTTGAAGCTACACAAGGCTATTTTACAGATAAAGATGACAATTTTGACAAACTATTGAGTGATGCACAAAAACCTCTGTACTCAGGAATGGATTATCAGAAGATTCATGCATGTGTCAATGATTGTGTCCTGTTTAGGAAAGGACTATCTGATGCAAATTCATGCCCAGGTTGTAAAACATCTAGATGGAAGCTTCGTATGAACTCAACTGAAGTTAAAAAAGGTATTCCGGCAAAGGTTATGTGGTGCTTTTCTCATATCCCTCGATTCCAACGCATGTTTCGACGTGCAGAGATGTCAAAATTATTAACTTGGCATGCTGAAGGAAGGAAAAAAGATGGATTTCTACGACATCAAATAGATTCGCCAGCTTGGAAATTAGTAGACGACATGTGGCCGGAATTTGGTTCTAAGTCAAGAAATCTTCGTTTAGCTAGCTCAACTGATGGAATCAATCCTCATGGTGACCTTAGTAGTAGATAA
Coding sequence (CDS)
ATGTATATCCATGACATTGATAAGAGTTATAAGATATGGATTTGGCATGGTGAACAAGTACCTATTAGGGATAAGGATGAAAACGATCCTACTTGTGGTGATGAAGACTCTACTGAAAGTGATGATATAAGAAACACCACTAAGTTGTTTGAAGCTACACAAGGCTATTTTACAGATAAAGATGACAATTTTGACAAACTATTGAGTGATGCACAAAAACCTCTGTACTCAGGAATGGATTATCAGAAGATTCATGCATGTGTCAATGATTGTGTCCTGTTTAGGAAAGGACTATCTGATGCAAATTCATGCCCAGGTTGTAAAACATCTAGATGGAAGCTTCGTATGAACTCAACTGAAGTTAAAAAAGGTATTCCGGCAAAGGTTATGTGGTGCTTTTCTCATATCCCTCGATTCCAACGCATGTTTCGACGTGCAGAGATGTCAAAATTATTAACTTGGCATGCTGAAGGAAGGAAAAAAGATGGATTTCTACGACATCAAATAGATTCGCCAGCTTGGAAATTAGTAGACGACATGTGGCCGGAATTTGGTTCTAAGTCAAGAAATCTTCGTTTAGCTAGCTCAACTGATGGAATCAATCCTCATGGTGACCTTAGTAGTAGATAA
Protein sequence
MYIHDIDKSYKIWIWHGEQVPIRDKDENDPTCGDEDSTESDDIRNTTKLFEATQGYFTDKDDNFDKLLSDAQKPLYSGMDYQKIHACVNDCVLFRKGLSDANSCPGCKTSRWKLRMNSTEVKKGIPAKVMWCFSHIPRFQRMFRRAEMSKLLTWHAEGRKKDGFLRHQIDSPAWKLVDDMWPEFGSKSRNLRLASSTDGINPHGDLSSR
Homology
BLAST of Lcy11g012530 vs. ExPASy TrEMBL
Match:
A0A6J1E201 (uncharacterized protein LOC111025252 OS=Momordica charantia OX=3673 GN=LOC111025252 PE=4 SV=1)
HSP 1 Score: 222.6 bits (566), Expect = 1.5e-54
Identity = 117/268 (43.66%), Postives = 146/268 (54.48%), Query Frame = 0
Query: 1 MYIHDIDKSYKIWIWHGEQVPIRDKDENDPTCGDEDSTESDDIRNTTKLFEATQGYFTDK 60
++++ ID+SYK IWHGE + I+ E+ T E+ DD +T FEA YF D
Sbjct: 70 LFVYGIDQSYKTXIWHGESISIKRNIESMSTSAQEE-VXDDDFDDTIGXFEAAYDYFDDN 129
Query: 61 DDNFDKLLSDAQKPLYS------------------------------------------- 120
NF++LL DA+KPLY
Sbjct: 130 PQNFEELLGDAKKPLYPNCKNFTKISALLKLYNLKAKFGWSDRSFTKLLALVCDMLPSPN 189
Query: 121 ----------------GMDYQKIHACVNDCVLFRKGLSDANSCPGCKTSRWKLRMNSTEV 180
GM Y+KIHAC DC LFRK LSDA+ CP C TSRWKLR +S E
Sbjct: 190 EIPNSMYQAKKTLCTLGMKYEKIHACRKDCCLFRKELSDADECPICGTSRWKLRKDSKEA 249
Query: 181 KKGIPAKVMWCFSHIPRFQRMFRRAEMSKLLTWHAEGRKKDGFLRHQIDSPAWKLVDDMW 210
K +PAKVMW FS IPRF+RMFR E+S LTWHA+ R DG++RH DS +WK VD +W
Sbjct: 250 MKNVPAKVMWYFSPIPRFERMFRSKEISSFLTWHAKKRVSDGYIRHPADSISWKEVDKLW 309
BLAST of Lcy11g012530 vs. ExPASy TrEMBL
Match:
A0A6J1DBH3 (uncharacterized protein LOC111018955 OS=Momordica charantia OX=3673 GN=LOC111018955 PE=4 SV=1)
HSP 1 Score: 219.9 bits (559), Expect = 9.8e-54
Identity = 116/268 (43.28%), Postives = 146/268 (54.48%), Query Frame = 0
Query: 1 MYIHDIDKSYKIWIWHGEQVPIRDKDENDPTCGDEDSTESDDIRNTTKLFEATQGYFTDK 60
++++ ID+SYK WIWHGE + I+ E+ T E E DD +T +FEA YF +
Sbjct: 70 LFVYGIDQSYKTWIWHGESISIKRNIESMSTSAQE-QVEDDDFDDTIGMFEAAYDYFDNS 129
Query: 61 DDNFDKLLSDAQKPLYS------------------------------------------- 120
+NF++LL DA+KPLY
Sbjct: 130 PENFEELLGDAKKPLYPNCKNFTKIFALLKLYNLKAKFGWSDRSFTELLALVRDMLPSPN 189
Query: 121 ----------------GMDYQKIHACVNDCVLFRKGLSDANSCPGCKTSRWKLRMNSTEV 180
GM Y+KIHAC DC LFRK LSDA+ C C TSRWK R +S E
Sbjct: 190 EIPNSMYQAKKTLCTLGMKYEKIHACRKDCCLFRKELSDADECXICGTSRWKXRKDSKEA 249
Query: 181 KKGIPAKVMWCFSHIPRFQRMFRRAEMSKLLTWHAEGRKKDGFLRHQIDSPAWKLVDDMW 210
K +PAKVMW FS IPRFQRMFR E+S LLTWHA+ R DG++RH DS +WK VD +
Sbjct: 250 MKNVPAKVMWYFSXIPRFQRMFRSKEISSLLTWHAKKRVSDGYIRHPADSISWKEVDKLX 309
BLAST of Lcy11g012530 vs. ExPASy TrEMBL
Match:
A0A6J1CXT3 (uncharacterized protein LOC111015258 OS=Momordica charantia OX=3673 GN=LOC111015258 PE=4 SV=1)
HSP 1 Score: 216.1 bits (549), Expect = 1.4e-52
Identity = 112/230 (48.70%), Postives = 137/230 (59.57%), Query Frame = 0
Query: 3 IHDIDKSYKIWIWHGEQVPIRDKDENDPTCGDEDSTESDDIRNTTKLFEATQGYFTDKDD 62
I+ IDKSYKIWIWHGEQ+P++DKDE+ T G ED + D I+NTT +F+A Q YF++K +
Sbjct: 50 IYGIDKSYKIWIWHGEQLPMKDKDESGTTKGKED-YDDDGIKNTTNMFKAAQDYFSNKSE 109
Query: 63 NFDKLLSDAQKPLYS--------------------------------------------- 122
NF+++L DAQKPLYS
Sbjct: 110 NFEQVLIDAQKPLYSSNKNFTKVFALLKLYNLKAKYGXSDKSFTELLTLVHDILPQPNEI 169
Query: 123 --------------GMDYQKIHACVNDCVLFRKGLSDANSCPGCKTSRWKLRMNSTEVKK 174
GM ++ IHACVNDC LFRK LSD ++CP CKTSRWKL NS E KK
Sbjct: 170 SISMYKAKKTLPTLGMKFENIHACVNDCCLFRKDLSDVDACPICKTSRWKLLKNSKEEKK 229
BLAST of Lcy11g012530 vs. ExPASy TrEMBL
Match:
A0A438CS99 (ULP_PROTEASE domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_114546 PE=3 SV=1)
HSP 1 Score: 211.1 bits (536), Expect = 4.5e-51
Identity = 112/270 (41.48%), Postives = 143/270 (52.96%), Query Frame = 0
Query: 1 MYIHDIDKSYKIWIWHGEQVPIRDKDENDPTCGDE--DSTESDDIRNTTKLFEATQGYFT 60
M+ H ID+SY W WHGE P PT E D + DD+ +T ++ +ATQ
Sbjct: 1 MFFHGIDQSYYTWYWHGEVAP-----SGPPTTRVEHYDKVQFDDVGSTIEMVQATQEDCK 60
Query: 61 DKDDNFDKLLSDAQKPLYS----------------------------------------- 120
+ ++F +LL DA+KPLY
Sbjct: 61 NDPESFQRLLKDAEKPLYPGCRNFTKLSALIKLYNLKARFGWSDKSFSELLEMLGNMLPV 120
Query: 121 ------------------GMDYQKIHACVNDCVLFRKGLSDANSCPGCKTSRWKLRMNST 180
GM+Y+KIHAC NDC+L+R L DA+SCP C TSRWK+ T
Sbjct: 121 NNELPLSMYEAKKTLNTLGMEYEKIHACPNDCILYRNELKDASSCPTCGTSRWKIDKTGT 180
Query: 181 EVKKGIPAKVMWCFSHIPRFQRMFRRAEMSKLLTWHAEGRKKDGFLRHQIDSPAWKLVDD 210
+ +KG+PAKVMW F +PRF+RMF+ +++K L WHAE R DG +RH DSP+WKLVD
Sbjct: 181 KKRKGVPAKVMWYFPPVPRFRRMFQSVKIAKELIWHAEERDFDGKMRHPSDSPSWKLVDH 240
BLAST of Lcy11g012530 vs. ExPASy TrEMBL
Match:
A0A6J1DR79 (uncharacterized protein LOC111023590 OS=Momordica charantia OX=3673 GN=LOC111023590 PE=4 SV=1)
HSP 1 Score: 208.4 bits (529), Expect = 2.9e-50
Identity = 104/206 (50.49%), Postives = 126/206 (61.17%), Query Frame = 0
Query: 35 EDSTESDDIRNTTKLFEATQGYFTDKDDNFDKLLSDAQKPLYSGMD-------------- 94
++ E DD +T +FEA YF D NF++LL DA+KPLY
Sbjct: 6 QEEVEDDDFDDTIGMFEAAYDYFDDSPANFEELLGDAKKPLYPNCKNFTKRSALLKLYNL 65
Query: 95 -----------------YQKIHACVNDCVLFRKGLSDANSCPGCKTSRWKLRMNSTEVKK 154
Y+KIHAC DC LFRK LSDA+ CP C TSRWKLR +S E K
Sbjct: 66 KAKFGWSDRSFTELLALYEKIHACRKDCCLFRKELSDADECPICGTSRWKLRKDSKEAMK 125
Query: 155 GIPAKVMWCFSHIPRFQRMFRRAEMSKLLTWHAEGRKKDGFLRHQIDSPAWKLVDDMWPE 210
+PAKVMW FS IPRFQRMFR E+S LLTWHA+ R DG++RH DS +WK VD +WPE
Sbjct: 126 NVPAKVMWYFSPIPRFQRMFRSKEISSLLTWHAKKRVSDGYIRHPADSISWKEVDKLWPE 185
BLAST of Lcy11g012530 vs. NCBI nr
Match:
XP_022158786.1 (uncharacterized protein LOC111025252 [Momordica charantia])
HSP 1 Score: 222.6 bits (566), Expect = 3.1e-54
Identity = 117/268 (43.66%), Postives = 146/268 (54.48%), Query Frame = 0
Query: 1 MYIHDIDKSYKIWIWHGEQVPIRDKDENDPTCGDEDSTESDDIRNTTKLFEATQGYFTDK 60
++++ ID+SYK IWHGE + I+ E+ T E+ DD +T FEA YF D
Sbjct: 70 LFVYGIDQSYKTXIWHGESISIKRNIESMSTSAQEE-VXDDDFDDTIGXFEAAYDYFDDN 129
Query: 61 DDNFDKLLSDAQKPLYS------------------------------------------- 120
NF++LL DA+KPLY
Sbjct: 130 PQNFEELLGDAKKPLYPNCKNFTKISALLKLYNLKAKFGWSDRSFTKLLALVCDMLPSPN 189
Query: 121 ----------------GMDYQKIHACVNDCVLFRKGLSDANSCPGCKTSRWKLRMNSTEV 180
GM Y+KIHAC DC LFRK LSDA+ CP C TSRWKLR +S E
Sbjct: 190 EIPNSMYQAKKTLCTLGMKYEKIHACRKDCCLFRKELSDADECPICGTSRWKLRKDSKEA 249
Query: 181 KKGIPAKVMWCFSHIPRFQRMFRRAEMSKLLTWHAEGRKKDGFLRHQIDSPAWKLVDDMW 210
K +PAKVMW FS IPRF+RMFR E+S LTWHA+ R DG++RH DS +WK VD +W
Sbjct: 250 MKNVPAKVMWYFSPIPRFERMFRSKEISSFLTWHAKKRVSDGYIRHPADSISWKEVDKLW 309
BLAST of Lcy11g012530 vs. NCBI nr
Match:
KAF7133053.1 (hypothetical protein RHSIM_Rhsim09G0096400 [Rhododendron simsii])
HSP 1 Score: 220.3 bits (560), Expect = 1.5e-53
Identity = 117/272 (43.01%), Postives = 151/272 (55.51%), Query Frame = 0
Query: 1 MYIHDIDKSYKIWIWHGE----QVPIRDKDENDPTCGDEDSTESDDIRNTTKLFEATQGY 60
++ H ID+SY+ WIWHGE + P E D DS+ S+D+ T ++ EA +
Sbjct: 58 LFFHGIDQSYQKWIWHGEAGTRKAPPSGYAE-DTFHRQVDSSPSNDVAETIEMVEAAYNH 117
Query: 61 FTDKDDNFDKLLSDAQKPLYS--------------------------------------- 120
+T + F KLL DA+KPLY
Sbjct: 118 YTADPNEFRKLLEDAEKPLYPGCSDTTKLSALVTAFNFKARHQLSNTAFDELLKILGQLL 177
Query: 121 --------------------GMDYQKIHACVNDCVLFRKGLSDANSCPGCKTSRWKLRMN 180
GM+Y+KIHAC +DC+L+RK DA +CP CK SRWKL+ N
Sbjct: 178 PKKNEMPSSMYEASKTMDTLGMEYEKIHACPSDCILYRKEYKDATTCPTCKRSRWKLKKN 237
Query: 181 STEVKKGIPAKVMWCFSHIPRFQRMFRRAEMSKLLTWHAEGRKKDGFLRHQIDSPAWKLV 210
STEV++G+PAKV+W F IPRF RM++ +E +K LTWHA R+ DG LRH DSP+WKLV
Sbjct: 238 STEVREGVPAKVVWYFPLIPRFLRMYQLSETAKNLTWHANERESDGKLRHPADSPSWKLV 297
BLAST of Lcy11g012530 vs. NCBI nr
Match:
XP_022150919.1 (uncharacterized protein LOC111018955 [Momordica charantia])
HSP 1 Score: 219.9 bits (559), Expect = 2.0e-53
Identity = 116/268 (43.28%), Postives = 146/268 (54.48%), Query Frame = 0
Query: 1 MYIHDIDKSYKIWIWHGEQVPIRDKDENDPTCGDEDSTESDDIRNTTKLFEATQGYFTDK 60
++++ ID+SYK WIWHGE + I+ E+ T E E DD +T +FEA YF +
Sbjct: 70 LFVYGIDQSYKTWIWHGESISIKRNIESMSTSAQE-QVEDDDFDDTIGMFEAAYDYFDNS 129
Query: 61 DDNFDKLLSDAQKPLYS------------------------------------------- 120
+NF++LL DA+KPLY
Sbjct: 130 PENFEELLGDAKKPLYPNCKNFTKIFALLKLYNLKAKFGWSDRSFTELLALVRDMLPSPN 189
Query: 121 ----------------GMDYQKIHACVNDCVLFRKGLSDANSCPGCKTSRWKLRMNSTEV 180
GM Y+KIHAC DC LFRK LSDA+ C C TSRWK R +S E
Sbjct: 190 EIPNSMYQAKKTLCTLGMKYEKIHACRKDCCLFRKELSDADECXICGTSRWKXRKDSKEA 249
Query: 181 KKGIPAKVMWCFSHIPRFQRMFRRAEMSKLLTWHAEGRKKDGFLRHQIDSPAWKLVDDMW 210
K +PAKVMW FS IPRFQRMFR E+S LLTWHA+ R DG++RH DS +WK VD +
Sbjct: 250 MKNVPAKVMWYFSXIPRFQRMFRSKEISSLLTWHAKKRVSDGYIRHPADSISWKEVDKLX 309
BLAST of Lcy11g012530 vs. NCBI nr
Match:
XP_022145911.1 (uncharacterized protein LOC111015258 [Momordica charantia])
HSP 1 Score: 216.1 bits (549), Expect = 2.9e-52
Identity = 112/230 (48.70%), Postives = 137/230 (59.57%), Query Frame = 0
Query: 3 IHDIDKSYKIWIWHGEQVPIRDKDENDPTCGDEDSTESDDIRNTTKLFEATQGYFTDKDD 62
I+ IDKSYKIWIWHGEQ+P++DKDE+ T G ED + D I+NTT +F+A Q YF++K +
Sbjct: 50 IYGIDKSYKIWIWHGEQLPMKDKDESGTTKGKED-YDDDGIKNTTNMFKAAQDYFSNKSE 109
Query: 63 NFDKLLSDAQKPLYS--------------------------------------------- 122
NF+++L DAQKPLYS
Sbjct: 110 NFEQVLIDAQKPLYSSNKNFTKVFALLKLYNLKAKYGXSDKSFTELLTLVHDILPQPNEI 169
Query: 123 --------------GMDYQKIHACVNDCVLFRKGLSDANSCPGCKTSRWKLRMNSTEVKK 174
GM ++ IHACVNDC LFRK LSD ++CP CKTSRWKL NS E KK
Sbjct: 170 SISMYKAKKTLPTLGMKFENIHACVNDCCLFRKDLSDVDACPICKTSRWKLLKNSKEEKK 229
BLAST of Lcy11g012530 vs. NCBI nr
Match:
RVW26095.1 (hypothetical protein CK203_114546 [Vitis vinifera])
HSP 1 Score: 211.1 bits (536), Expect = 9.4e-51
Identity = 112/270 (41.48%), Postives = 143/270 (52.96%), Query Frame = 0
Query: 1 MYIHDIDKSYKIWIWHGEQVPIRDKDENDPTCGDE--DSTESDDIRNTTKLFEATQGYFT 60
M+ H ID+SY W WHGE P PT E D + DD+ +T ++ +ATQ
Sbjct: 1 MFFHGIDQSYYTWYWHGEVAP-----SGPPTTRVEHYDKVQFDDVGSTIEMVQATQEDCK 60
Query: 61 DKDDNFDKLLSDAQKPLYS----------------------------------------- 120
+ ++F +LL DA+KPLY
Sbjct: 61 NDPESFQRLLKDAEKPLYPGCRNFTKLSALIKLYNLKARFGWSDKSFSELLEMLGNMLPV 120
Query: 121 ------------------GMDYQKIHACVNDCVLFRKGLSDANSCPGCKTSRWKLRMNST 180
GM+Y+KIHAC NDC+L+R L DA+SCP C TSRWK+ T
Sbjct: 121 NNELPLSMYEAKKTLNTLGMEYEKIHACPNDCILYRNELKDASSCPTCGTSRWKIDKTGT 180
Query: 181 EVKKGIPAKVMWCFSHIPRFQRMFRRAEMSKLLTWHAEGRKKDGFLRHQIDSPAWKLVDD 210
+ +KG+PAKVMW F +PRF+RMF+ +++K L WHAE R DG +RH DSP+WKLVD
Sbjct: 181 KKRKGVPAKVMWYFPPVPRFRRMFQSVKIAKELIWHAEERDFDGKMRHPSDSPSWKLVDH 240
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1E201 | 1.5e-54 | 43.66 | uncharacterized protein LOC111025252 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
| A0A6J1DBH3 | 9.8e-54 | 43.28 | uncharacterized protein LOC111018955 OS=Momordica charantia OX=3673 GN=LOC111018... | [more] |
| A0A6J1CXT3 | 1.4e-52 | 48.70 | uncharacterized protein LOC111015258 OS=Momordica charantia OX=3673 GN=LOC111015... | [more] |
| A0A438CS99 | 4.5e-51 | 41.48 | ULP_PROTEASE domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_11454... | [more] |
| A0A6J1DR79 | 2.9e-50 | 50.49 | uncharacterized protein LOC111023590 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_022158786.1 | 3.1e-54 | 43.66 | uncharacterized protein LOC111025252 [Momordica charantia] | [more] |
| KAF7133053.1 | 1.5e-53 | 43.01 | hypothetical protein RHSIM_Rhsim09G0096400 [Rhododendron simsii] | [more] |
| XP_022150919.1 | 2.0e-53 | 43.28 | uncharacterized protein LOC111018955 [Momordica charantia] | [more] |
| XP_022145911.1 | 2.9e-52 | 48.70 | uncharacterized protein LOC111015258 [Momordica charantia] | [more] |
| RVW26095.1 | 9.4e-51 | 41.48 | hypothetical protein CK203_114546 [Vitis vinifera] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
