Lcy11g012380 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g012380
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	4-hydroxy-tetrahydrodipicolinate synthase
Location	Chr11: 16918453 .. 16922877 (-)
RNA-Seq Expression	Lcy11g012380
Synteny	Lcy11g012380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGGAAAGGGAAAGAGTTTCCTTTTAGTAAGGGATGCAGCTTTTATCGCTTGGTTGTTGCTGATTGCAAGAGACAAATAATGTACGTAATATTTCTATTTTCTTCCTTTCTTCGGTGAGAGGAAGCAGCTTAGTTGCACGAGACAATGTAGACTATTGAGCCTACAAAGATCAAGCTTTAAATTGGTCTACTAACTTTGTTTTTTACTGGCCTTCTCTCAATTAACAGCTATGCACGAGACAGTGTTGAGCCTGCATTCAAGCCTGGGGAGATGGCTTTGGTATGTAATGTTGCTTTCTATCTTGTTCATAAATGTGGTGGCCCGTCCTATTACTTTTTACTTTTATAAGTGCACGTCCTATTAGTCTAATCATATTTGTAGGTTTTGACTGTCTTTTAGGAAGCCAAATAATCTGAGTAATTTAAAATTTTGAGGATGGTTTCTTTAATATGTTTCTTTAATATGTTTGGGACATATTAGCGTATGATCCATTAACTTGAAGTGTGAAGTTTATCCATTCCTTAACTTGTATTCTGCCTAGTTGCCGCAAGGTACGGTGTTTGGAAGGTTTTTAGGATTCATAGTATTTGAGATGATGAGCTGTCTTTGTTTATAGAAACAACTAGCAAGCCCTAGCTCGGATGAAGAAGTGTGGTTTGATATGAAGGAATGTTTAACCTTATGTAGTTAAGGGAGTTTGTTTATGGTTTTAGATTATCAGCATCATAACTTTCATAAACTCATGTGAAATATCCAAAGATTTAATTTTTCAAGATAGTCGTTACCATGATTATGGTGTTTTTGTCAATTTTTTTCTATTTCTTGGATGGTTACATTGATAAATAATAAAAATTAGGCTTCAAATTCTAGCACATAGCTCCTGAGATTTTTAAATGCTTGATAGATGGTTCATTTAAATTGAAATACGAGACTCATCTAATTCAAATGAGCATCCATGGTGATTTAAAAAGTGAGACGATGGTCTTTATTATGTTATCAGGTCAACTTAATAATTCTTTCCCTACTTTATGGTCTCAAGATATCTATTAAACATGCAAATTTTCTTTTGCAATGATTTCTATCATAAAACTACAATTATGCTTAACTGTGTCATTCATATTACTTGCTCCACTTTGAGAGCTTAATGTTCTTGTTGCACCTAAGTTATTGTGTTTAGGGAGTTTAATTTTGTTGAGTTGTTTAGTTGAATTGTTCCATTTGCAAAGTTGAGTTTCTAAGTTGTAGTTGTTAAGTTGTTCTATTTGGGGGTCAATACCTTGTTGCACTTAGTCCTTTTAACTAGTTATTGTGTTTTTTAAAGTTTAGTTTAACTTATTTTCCATTTAGTTGTTGTGTTTAGGAAGGTCGATACCTATTTGCACTTAAGTATTTTAACTAATGTAGTTGTGTTTAGGGGGTGGTCAATACCTTGTTGTACTTAGTTCTTTTAACGAGTTTACTTGTTTTCATTGATATGTTTAGTTGTCACGGTGTGGTTGAGTTGAGTTTGATTGCAAATGGCTTTCATGATATTTGGGATAAGTGTTTAGGGAGTTTATTTTTGTTGAGTTGTTCCATTTGCAGAGATGAGTTTCGTTGTTTGATTTGTTAAGGTATTGTGTTTAGGAGAGGGGGGGGGGGGTCAATACCTTGTTGCACTTAAGTTATTGTGTTTAGGGAGTTTAATTTTGTTGAGTTGTTTAGTTGAATTGTTCCATTTGCAAAGTTGAGTTTCTAAGTTGTAGTTGTTAAGTTATTCTATTCGGGGGGTCAATACCTTGTTGCACTTAGGCCCTTCAACTAGTTATTGTGTTTTTTAAAGTTTAGTTTCACTTATTTTCCATTTAGTTGTTGTGTTTAGGAAGGTTGATACCTATTTGCACTTAAGTATTTTAACTAGTGTAGTTGTTCTGATGTTGATAAGTTTAGTTTCATTAAGTTCTTATAAATTTAGTTTCACTCTGTTTCTCTGTTTGTGGAGTGTTGCTTTTTTGTAAAGAGAGTGAATCTTTTCTGATCGTTTGAGACCATTTCTTAGGTACCCAATTTATCATATTCCCATGGGGAGAACTATCAAGGACTTGTCCACTTGCTTCTTCACTTATCACACTCTATCATCTTCATTTTAAGGTACGATATGTTATTCTTTCGATATTTATCGTGGAGAAATGACATTAGATAGATTTGAAGACAGGAAACTTGGTCTTGTGTTTGGTTCCTTTGAGCATGAGACAACTTAAGCTGAAATATTAGTCACATAAAAGTAATTTTGTTAGCCTTTTTTACTGTTTGTGATTTGTGATGTAATTGAATTTGATTAATGTTGTTTCTTTGTTTCTTTGTTGAATCAATGTTCTTCACTTAGAATGCTATTAAGAAATGACATAAATGTATAGGCATCCACATTCTTTTTAAGTTGCTATTGAAGTCTTGTGAGCTGTTCTTGAGGATTTTTTAATCAACTTTTAAAAAAATAATAATAATAGCATTTAATTAAATGCATTTACCTTTTCATTCCTAGCTAAGGTATGATATCAAGGCCGAAGTTGCAATTGATTCATGTTTGAAATCTTTTCTTTTTCCCGTGCTTGTTATTTTTAATAAAGCATAACTTAATCAGTATGGCTCTTGCCAGGGAAACTCCAAAAGAATTTTATCATTTAATTCTTTGACTTTGAATGTTAACACTATTAGACTTTAGGTTGCTTATGCTATGACAATATGGAAACAAGTGAAGCCAACCCTTGCAGCAAACTTGTGGAATGAAGCTTTGAACATTAGACTTAGAACAAAGGTACTTATAATGCTTATCTAGTTTAAATGAAGAAAGTTTTTATAAGAAATGGACGATTGTGGAGTTGAATATTTGAATTAGTTATTTTTCTTTCATATTTATCATATGTAAAATATTGGAAAGATTTTTACTCTCAACTAGATAGAACTTTCTTATTAGGTTCATTCTTGTCGTAATAGTATTTATATTGTCTTGGGGTAGAGGAATGACGACCAACAAACTTCGTTCTTAGAGGCCTTGAATCAAATTTGCTCCTTTGGTTGGTTTTAATATGAATAGATTGGTGAGTGTTAAAGGACCACAGATTTTGTGTGTTTGACTTGAATGATAGCTTTCATTCAAATTTGTCGGGGTTCTTTGTTGGTTCTGGATTTGTTTTTGGTTTGGTCTTTAAGGTGGACTTCGATTTTATTGATGCATATACCACCCTCTCCCTCCATTTGACCATGAAGAATTTGAACTTTAATTTTGATCATTTGTTAGTGTGAAGAAGTTTGCTGCCTAACCTTAAAATGACGTTACCGTCTATTATCTTATTATGCACTTTTTCCTATATGGTTCATACAACTGGTGTGTCCCTATTGAAACTATTGTTTTTTTTTTTTCTTTTTTCATGTGTATTCACTTATCCCTCTATGGTCCATGTTTTCTTGGTGGTTGTAAACTTTTTGACTTTGTTTTTAACACTTTGCAGATCCAAAAGAGGACTTGAGGAAAATTGAAAATTATTTTTTATGCTGGATTAGTCATTTTTTTATGTTTAAATTAAATCGTTTATCTGCTGTTTTTTCCTCTCCAACGCTAATATAGTGGCCATTTCTCTTAGGTCTCGTCTTTGTATCAGTTATGTATAGAGAAATGTTGAGGAAATTCTAGTTGTTGCTTTTTGTTTTCTCCAGTTCATAATAGTAGTTCTATTAATATCATTTTTCATCACATAGCTCCAAGTTTCCTCAATTGGTGGATATAAGGTAACAAAAGATGTAAGATTTTTTTTTTTTTTTGCACGCTTTCTCACTGATTAGATATAATGTAACAATTGATTGTTCTTCATTCACTATCACAGTCTGAGGAAGACTTAAATGACAAGCTTCACTCAACCCCCCCTCTCTATCTCTCGATACTAGCAATTTAACAATGTGATAGTGTCTGAATGGTTTCTTGGTTGTAGAATATTTATGATTATGAAACCGTGTTGGTGTGTGTATTCGATGAGTCACAAAATAATCCCTATTTTTGGTATTGGACAACAAGATTTATTGTCGTTGAGATATAATGTGGTTAGAGTTAGACAACTGTTTGAAGATGAGAACAGAAGTTTCTGGACAATCATTGATGGGCTTAATTCCTCCAACTCTTATTTGCAGGACATCAGCAGATGATATCAAGTCTCTTAGACTTGTAACTGCGATTAAAACACCATATCTTCCCGATGGTAGATTTGATATAGAAGCTTATGATGCCTTGGTGAACCGTCAGATTGAAAATGGAGCTAAAGGTGTGATTGTGGGTGGCACAACTGGTGAAGGTCAGTTGATGAGCTGGGATGAACACATAATGCTTATTGGTCACACTGTCAACTGTTTTGGTGGATCAATCAAGGTAATAGGCAACACTGCATGCTTATGA

mRNA sequence

AATGGAAAGGGAAAGAGTTTCCTTTTAGTAAGGGATGCAGCTTTTATCGCTTGGTTGTTGCTGATTGCAAGAGACAAATAATCTATGCACGAGACAGTGTTGAGCCTGCATTCAAGCCTGGGGAGATGGCTTTGGTTGCTTATGCTATGACAATATGGAAACAAGTGAAGCCAACCCTTGCAGCAAACTTGTGGAATGAAGCTTTGAACATTAGACTTAGAACAAAGAATATTTATGATTATGAAACCGTGTTGGTGTGTGTATTCGATGAGTCACAAAATAATCCCTATTTTTGGACATCAGCAGATGATATCAAGTCTCTTAGACTTGTAACTGCGATTAAAACACCATATCTTCCCGATGGTAGATTTGATATAGAAGCTTATGATGCCTTGGTGAACCGTCAGATTGAAAATGGAGCTAAAGGTGTGATTGTGGGTGGCACAACTGGTGAAGGTCAGTTGATGAGCTGGGATGAACACATAATGCTTATTGGTCACACTGTCAACTGTTTTGGTGGATCAATCAAGGTAATAGGCAACACTGCATGCTTATGA

Coding sequence (CDS)

AATGGAAAGGGAAAGAGTTTCCTTTTAGTAAGGGATGCAGCTTTTATCGCTTGGTTGTTGCTGATTGCAAGAGACAAATAATCTATGCACGAGACAGTGTTGAGCCTGCATTCAAGCCTGGGGAGATGGCTTTGGTTGCTTATGCTATGACAATATGGAAACAAGTGAAGCCAACCCTTGCAGCAAACTTGTGGAATGAAGCTTTGAACATTAGACTTAGAACAAAGAATATTTATGATTATGAAACCGTGTTGGTGTGTGTATTCGATGAGTCACAAAATAATCCCTATTTTTGGACATCAGCAGATGATATCAAGTCTCTTAGACTTGTAACTGCGATTAAAACACCATATCTTCCCGATGGTAGATTTGATATAGAAGCTTATGATGCCTTGGTGAACCGTCAGATTGAAAATGGAGCTAAAGGTGTGATTGTGGGTGGCACAACTGGTGAAGGTCAGTTGATGAGCTGGGATGAACACATAATGCTTATTGGTCACACTGTCAACTGTTTTGGTGGATCAATCAAGGTAATAGGCAACACTGCATGCTTATGA

Protein sequence

WKGKEFPFSKGCSFYRLVVADCKRQIIYARDSVEPAFKPGEMALVAYAMTIWKQVKPTLAANLWNEALNIRLRTKNIYDYETVLVCVFDESQNNPYFWTSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTACL

Homology

[Close]

BLAST of Lcy11g012380 vs. ExPASy Swiss-Prot
Match: Q42948 (4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic OS=Nicotiana tabacum OX=4097 GN=DHPS1 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-39
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 99  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWD 158
           T ADDIK+LRL+TAIKTPYLPDGRFD+EAYD LVN QIENGA+GVIVGGTTGEGQLMSWD
Sbjct: 52  TFADDIKALRLITAIKTPYLPDGRFDLEAYDTLVNLQIENGAEGVIVGGTTGEGQLMSWD 111

Query: 159 EHIMLIGHTVNCFGGSIKVIGNT 182
           EHIMLIGHTVNCFGGSIKVIGNT
Sbjct: 112 EHIMLIGHTVNCFGGSIKVIGNT 134

[Close]

BLAST of Lcy11g012380 vs. ExPASy Swiss-Prot
Match: Q9FVC8 (4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DHDPS2 PE=1 SV=2)

HSP 1 Score: 160.2 bits (404), Expect = 2.2e-38
Identity = 73/83 (87.95%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 99  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWD 158
           T+ DDIK+LR++TAIKTPYLPDGRFD+EAYD LVN QI+NGA+GVIVGGTTGEGQLMSWD
Sbjct: 58  TNTDDIKALRVITAIKTPYLPDGRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWD 117

Query: 159 EHIMLIGHTVNCFGGSIKVIGNT 182
           EHIMLIGHTVNCFGGSIKVIGNT
Sbjct: 118 EHIMLIGHTVNCFGGSIKVIGNT 140

[Close]

BLAST of Lcy11g012380 vs. ExPASy Swiss-Prot
Match: Q9LZX6 (4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DHDPS1 PE=1 SV=2)

HSP 1 Score: 159.1 bits (401), Expect = 4.9e-38
Identity = 72/83 (86.75%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 99  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWD 158
           T+ DDI+SLR++TAIKTPYLPDGRFD++AYD LVN QIENGA+GVIVGGTTGEGQLMSWD
Sbjct: 58  TNTDDIRSLRVITAIKTPYLPDGRFDLQAYDDLVNTQIENGAEGVIVGGTTGEGQLMSWD 117

Query: 159 EHIMLIGHTVNCFGGSIKVIGNT 182
           EHIMLIGHTVNCFGG IKVIGNT
Sbjct: 118 EHIMLIGHTVNCFGGRIKVIGNT 140

[Close]

BLAST of Lcy11g012380 vs. ExPASy Swiss-Prot
Match: Q39535 (4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic OS=Coix lacryma-jobi OX=4505 GN=DAPA PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 7.0e-37
Identity = 70/83 (84.34%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 99  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWD 158
           TS DDI SLRL+TA+KTPYLPDGRFD+EAYD+L+N QIE GA+GVIVGGTTGEG LMSWD
Sbjct: 70  TSTDDITSLRLITAVKTPYLPDGRFDLEAYDSLINMQIEGGAEGVIVGGTTGEGHLMSWD 129

Query: 159 EHIMLIGHTVNCFGGSIKVIGNT 182
           EHIMLIGHTVNCFG  IKVIGNT
Sbjct: 130 EHIMLIGHTVNCFGSRIKVIGNT 152

[Close]

BLAST of Lcy11g012380 vs. ExPASy Swiss-Prot
Match: P24846 (4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic OS=Triticum aestivum OX=4565 PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.0e-36
Identity = 69/83 (83.13%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 99  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWD 158
           TS D IKSLRL+TA+KTPYLPDGRFD+EAYD+L+N QI  GA+GVIVGGTTGEG LMSWD
Sbjct: 81  TSTDGIKSLRLITAVKTPYLPDGRFDLEAYDSLINTQINGGAEGVIVGGTTGEGHLMSWD 140

Query: 159 EHIMLIGHTVNCFGGSIKVIGNT 182
           EHIMLIGHTVNCFG +IKVIGNT
Sbjct: 141 EHIMLIGHTVNCFGANIKVIGNT 163

[Close]

BLAST of Lcy11g012380 vs. ExPASy TrEMBL
Match: A0A6J1IVZ1 (4-hydroxy-tetrahydrodipicolinate synthase OS=Cucurbita maxima OX=3661 GN=LOC111479730 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.0e-38
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 99  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWD 158
           TSADDIKSLRLVTAIKTPYLPDGRFD+EAYDALVNRQIENGA+ VIVGGTTGEGQLMSWD
Sbjct: 60  TSADDIKSLRLVTAIKTPYLPDGRFDLEAYDALVNRQIENGAEAVIVGGTTGEGQLMSWD 119

Query: 159 EHIMLIGHTVNCFGGSIKVIGNT 182
           EHIMLIGHTVNCFGGSIKVIGNT
Sbjct: 120 EHIMLIGHTVNCFGGSIKVIGNT 142

[Close]

BLAST of Lcy11g012380 vs. ExPASy TrEMBL
Match: A0A6J1E8W7 (4-hydroxy-tetrahydrodipicolinate synthase OS=Cucurbita moschata OX=3662 GN=LOC111431867 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.0e-38
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 99  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWD 158
           TSADDIKSLRLVTAIKTPYLPDGRFD+EAYDALVNRQIENGA+ VIVGGTTGEGQLMSWD
Sbjct: 60  TSADDIKSLRLVTAIKTPYLPDGRFDLEAYDALVNRQIENGAEAVIVGGTTGEGQLMSWD 119

Query: 159 EHIMLIGHTVNCFGGSIKVIGNT 182
           EHIMLIGHTVNCFGGSIKVIGNT
Sbjct: 120 EHIMLIGHTVNCFGGSIKVIGNT 142

[Close]

BLAST of Lcy11g012380 vs. ExPASy TrEMBL
Match: A0A6J1CZ39 (4-hydroxy-tetrahydrodipicolinate synthase OS=Momordica charantia OX=3673 GN=LOC111016093 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.3e-38
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 99  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWD 158
           TSADDIKSLRLVTAIKTPYLPDGRFD+EAYDALVN QIENGA+GVIVGGTTGEGQLMSWD
Sbjct: 62  TSADDIKSLRLVTAIKTPYLPDGRFDLEAYDALVNLQIENGAEGVIVGGTTGEGQLMSWD 121

Query: 159 EHIMLIGHTVNCFGGSIKVIGNT 182
           EHIMLIGHTVNCFGGSIKVIGNT
Sbjct: 122 EHIMLIGHTVNCFGGSIKVIGNT 144

[Close]

BLAST of Lcy11g012380 vs. ExPASy TrEMBL
Match: A0A5A7U5X2 (4-hydroxy-tetrahydrodipicolinate synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004080 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.7e-38
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 99  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWD 158
           T ADDIKSLRLVTAIKTPYLPDGRFD+EAYDALVNRQIENGA GVIVGGTTGEGQLMSWD
Sbjct: 62  TIADDIKSLRLVTAIKTPYLPDGRFDLEAYDALVNRQIENGADGVIVGGTTGEGQLMSWD 121

Query: 159 EHIMLIGHTVNCFGGSIKVIGNT 182
           EHIMLIGHTVNCFGGSIKVIGNT
Sbjct: 122 EHIMLIGHTVNCFGGSIKVIGNT 144

[Close]

BLAST of Lcy11g012380 vs. ExPASy TrEMBL
Match: A0A1S3AWB5 (4-hydroxy-tetrahydrodipicolinate synthase OS=Cucumis melo OX=3656 GN=LOC103483341 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.7e-38
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 99  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWD 158
           T ADDIKSLRLVTAIKTPYLPDGRFD+EAYDALVNRQIENGA GVIVGGTTGEGQLMSWD
Sbjct: 62  TIADDIKSLRLVTAIKTPYLPDGRFDLEAYDALVNRQIENGADGVIVGGTTGEGQLMSWD 121

Query: 159 EHIMLIGHTVNCFGGSIKVIGNT 182
           EHIMLIGHTVNCFGGSIKVIGNT
Sbjct: 122 EHIMLIGHTVNCFGGSIKVIGNT 144

[Close]

BLAST of Lcy11g012380 vs. NCBI nr
Match: XP_038898920.1 (4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 171.4 bits (433), Expect = 7.2e-39
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 99  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWD 158
           TSADDIKSLRLVTAIKTPYLPDGRFD+EAYDALVNRQIENGA GVIVGGTTGEGQLMSWD
Sbjct: 62  TSADDIKSLRLVTAIKTPYLPDGRFDLEAYDALVNRQIENGADGVIVGGTTGEGQLMSWD 121

Query: 159 EHIMLIGHTVNCFGGSIKVIGNT 182
           EHIMLIGHTVNCFGGSIKVIGNT
Sbjct: 122 EHIMLIGHTVNCFGGSIKVIGNT 144

[Close]

BLAST of Lcy11g012380 vs. NCBI nr
Match: XP_023528690.1 (4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.9 bits (429), Expect = 2.1e-38
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 99  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWD 158
           TSADDIKSLRLVTAIKTPYLPDGRFD+EAYDALVNRQIENGA+ VIVGGTTGEGQLMSWD
Sbjct: 60  TSADDIKSLRLVTAIKTPYLPDGRFDLEAYDALVNRQIENGAEAVIVGGTTGEGQLMSWD 119

Query: 159 EHIMLIGHTVNCFGGSIKVIGNT 182
           EHIMLIGHTVNCFGGSIKVIGNT
Sbjct: 120 EHIMLIGHTVNCFGGSIKVIGNT 142

[Close]

BLAST of Lcy11g012380 vs. NCBI nr
Match: KAG6582569.1 (4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.9 bits (429), Expect = 2.1e-38
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 99  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWD 158
           TSADDIKSLRLVTAIKTPYLPDGRFD+EAYDALVNRQIENGA+ VIVGGTTGEGQLMSWD
Sbjct: 60  TSADDIKSLRLVTAIKTPYLPDGRFDLEAYDALVNRQIENGAEAVIVGGTTGEGQLMSWD 119

Query: 159 EHIMLIGHTVNCFGGSIKVIGNT 182
           EHIMLIGHTVNCFGGSIKVIGNT
Sbjct: 120 EHIMLIGHTVNCFGGSIKVIGNT 142

[Close]

BLAST of Lcy11g012380 vs. NCBI nr
Match: XP_022980330.1 (4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 169.9 bits (429), Expect = 2.1e-38
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 99  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWD 158
           TSADDIKSLRLVTAIKTPYLPDGRFD+EAYDALVNRQIENGA+ VIVGGTTGEGQLMSWD
Sbjct: 60  TSADDIKSLRLVTAIKTPYLPDGRFDLEAYDALVNRQIENGAEAVIVGGTTGEGQLMSWD 119

Query: 159 EHIMLIGHTVNCFGGSIKVIGNT 182
           EHIMLIGHTVNCFGGSIKVIGNT
Sbjct: 120 EHIMLIGHTVNCFGGSIKVIGNT 142

[Close]

BLAST of Lcy11g012380 vs. NCBI nr
Match: KAG7018953.1 (4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.9 bits (429), Expect = 2.1e-38
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 99  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWD 158
           TSADDIKSLRLVTAIKTPYLPDGRFD+EAYDALVNRQIENGA+ VIVGGTTGEGQLMSWD
Sbjct: 60  TSADDIKSLRLVTAIKTPYLPDGRFDLEAYDALVNRQIENGAEAVIVGGTTGEGQLMSWD 119

Query: 159 EHIMLIGHTVNCFGGSIKVIGNT 182
           EHIMLIGHTVNCFGGSIKVIGNT
Sbjct: 120 EHIMLIGHTVNCFGGSIKVIGNT 142

[Close]

BLAST of Lcy11g012380 vs. TAIR 10
Match: AT2G45440.1 (dihydrodipicolinate synthase )

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-39
Identity = 73/83 (87.95%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 99  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWD 158
           T+ DDIK+LR++TAIKTPYLPDGRFD+EAYD LVN QI+NGA+GVIVGGTTGEGQLMSWD
Sbjct: 58  TNTDDIKALRVITAIKTPYLPDGRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWD 117

Query: 159 EHIMLIGHTVNCFGGSIKVIGNT 182
           EHIMLIGHTVNCFGGSIKVIGNT
Sbjct: 118 EHIMLIGHTVNCFGGSIKVIGNT 140

[Close]

BLAST of Lcy11g012380 vs. TAIR 10
Match: AT3G60880.1 (dihydrodipicolinate synthase 1 )

HSP 1 Score: 159.1 bits (401), Expect = 3.5e-39
Identity = 72/83 (86.75%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 99  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWD 158
           T+ DDI+SLR++TAIKTPYLPDGRFD++AYD LVN QIENGA+GVIVGGTTGEGQLMSWD
Sbjct: 57  TNTDDIRSLRVITAIKTPYLPDGRFDLQAYDDLVNTQIENGAEGVIVGGTTGEGQLMSWD 116

Query: 159 EHIMLIGHTVNCFGGSIKVIGNT 182
           EHIMLIGHTVNCFGG IKVIGNT
Sbjct: 117 EHIMLIGHTVNCFGGRIKVIGNT 139

[Close]

BLAST of Lcy11g012380 vs. TAIR 10
Match: AT3G60880.2 (dihydrodipicolinate synthase 1 )

HSP 1 Score: 159.1 bits (401), Expect = 3.5e-39
Identity = 72/83 (86.75%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 99  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWD 158
           T+ DDI+SLR++TAIKTPYLPDGRFD++AYD LVN QIENGA+GVIVGGTTGEGQLMSWD
Sbjct: 58  TNTDDIRSLRVITAIKTPYLPDGRFDLQAYDDLVNTQIENGAEGVIVGGTTGEGQLMSWD 117

Query: 159 EHIMLIGHTVNCFGGSIKVIGNT 182
           EHIMLIGHTVNCFGG IKVIGNT
Sbjct: 118 EHIMLIGHTVNCFGGRIKVIGNT 140

[Close]

BLAST of Lcy11g012380 vs. TAIR 10
Match: AT1G71480.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 81.3 bits (199), Expect = 9.2e-16
Identity = 40/61 (65.57%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 1   WKGKEFPFSKGCSFYRLVVADCKRQIIYARDSVEPAFKPGEMALVAYAMTIWKQVK-PTL 60
           WKGK FPFSKGCSFYRL V D KRQI+Y RD VEPA KPGE  L A     W   K P L
Sbjct: 153 WKGKNFPFSKGCSFYRLEVIDGKRQIVYGRDCVEPAIKPGETVLAAIKGVTWLLQKFPQL 212

[Close]

BLAST of Lcy11g012380 vs. TAIR 10
Match: AT4G27020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 2.7e-07
Identity = 38/94 (40.43%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 39  PGEMALVAYAMTIWKQVKPTLAANLWNEALNIRLRTKNIYDYETVLVCV------FDESQ 98
           P +  LVA  MT+W +++P  AAN+WNEALN RL T+ + D   VLV V      FDE  
Sbjct: 349 PLDAQLVASVMTVWSKIQPDYAANMWNEALNKRLGTEGL-DLPDVLVEVEKRGSSFDELL 408

Query: 99  NNPY--FWTSADDIKSLRLVTAIKTPYLPDGRFD 125
             P    W  +D  KS   +  I   Y   G FD
Sbjct: 409 AVPEQDDWIYSDG-KSTSCIAFILEMYKEAGLFD 440

The following BLAST results are available for this feature:

BLAST of Lcy11g012380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q42948	1.5e-39	91.57	4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic OS=Nicotiana tabacum OX...	[more]
Q9FVC8	2.2e-38	87.95	4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic OS=Arabidopsis thalia...	[more]
Q9LZX6	4.9e-38	86.75	4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic OS=Arabidopsis thalia...	[more]
Q39535	7.0e-37	84.34	4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic OS=Coix lacryma-jobi OX...	[more]
P24846	2.0e-36	83.13	4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic OS=Triticum aestivum ...	[more]

BLAST of Lcy11g012380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IVZ1	1.0e-38	96.39	4-hydroxy-tetrahydrodipicolinate synthase OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1E8W7	1.0e-38	96.39	4-hydroxy-tetrahydrodipicolinate synthase OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1CZ39	1.3e-38	96.39	4-hydroxy-tetrahydrodipicolinate synthase OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A5A7U5X2	1.7e-38	96.39	4-hydroxy-tetrahydrodipicolinate synthase OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3AWB5	1.7e-38	96.39	4-hydroxy-tetrahydrodipicolinate synthase OS=Cucumis melo OX=3656 GN=LOC10348334...	[more]

BLAST of Lcy11g012380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898920.1	7.2e-39	97.59	4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Benincasa hispida...	[more]
XP_023528690.1	2.1e-38	96.39	4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Cucurbita pepo su...	[more]
KAG6582569.1	2.1e-38	96.39	4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic, partial [Cucurbita arg...	[more]
XP_022980330.1	2.1e-38	96.39	4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Cucurbita maxima]	[more]
KAG7018953.1	2.1e-38	96.39	4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic [Cucurbita argyrosperma...	[more]

BLAST of Lcy11g012380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45440.1	1.6e-39	87.95	dihydrodipicolinate synthase	[more]
AT3G60880.1	3.5e-39	86.75	dihydrodipicolinate synthase 1	[more]
AT3G60880.2	3.5e-39	86.75	dihydrodipicolinate synthase 1	[more]
AT1G71480.1	9.2e-16	65.57	Nuclear transport factor 2 (NTF2) family protein	[more]
AT4G27020.1	2.7e-07	40.43	unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: vacuole; ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002220	DapA-like	PRINTS	PR00146	DHPICSNTHASE	coord: 175..184 score: 17.37 coord: 139..160 score: 52.12
IPR002220	DapA-like	PFAM	PF00701	DHDPS	coord: 107..183 e-value: 4.6E-23 score: 81.3
IPR002220	DapA-like	PANTHER	PTHR12128	DIHYDRODIPICOLINATE SYNTHASE	coord: 99..182
IPR013785	Aldolase-type TIM barrel	GENE3D	3.20.20.70	Aldolase class I	coord: 100..184 e-value: 1.6E-20 score: 75.2
None	No IPR available	PANTHER	PTHR12128:SF59	4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE, CHLOROPLASTIC	coord: 99..182
None	No IPR available	SUPERFAMILY	51569	Aldolase	coord: 110..183
IPR020624	Schiff base-forming aldolase, conserved site	PROSITE	PS00665	DHDPS_1	coord: 142..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g012380.1	Lcy11g012380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019877	diaminopimelate biosynthetic process
biological_process	GO:0009089	lysine biosynthetic process via diaminopimelate
molecular_function	GO:0008840	4-hydroxy-tetrahydrodipicolinate synthase activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0016829	lyase activity