Lcy11g011930 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g011930
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Cytochrome c-type biogenesis ccda-like chloroplastic protein
Location	Chr11: 14920247 .. 14923756 (-)
RNA-Seq Expression	Lcy11g011930
Synteny	Lcy11g011930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGACCCGTCCTCACGCTACCATCTCCCTCTCTTTCTCTCAGAATCGAAGGGGACCCTTCGATTCCGAGAGAAAGTGGCGGTGAACGAACTGCGAACAAGCAACGAATTGACAGAGAACGGGTGACGAACTTCAGTTTCAGAGGTTAGCGAACACAGTTTGAAGTGAGGGGAGAGAGAGATCTTAAACAGCGGGGTATCTGGCACGCGCGGCGGAAAGAGAGAGGAAGGGAGAGAGAGGGGTAGCTGGCACGGCAACGATCGGAGTTGAGTGGCGGCTGTCGGCGGCGGCCATGGTGGAGGAGGATGAAGCTTTTAGGGTTTGTTTTTAGGAAGAAGAAGATGGATGATGGGGAAGAAGAAAGGAGAAAAAAAAAGTAAAATGAAAAAAGAAAATATATTTGTTAATAAATTTTTTTTATTAAAAATTTGAAATAACTAATAATTAAAAATTTGAAATAACTAATAATAATAATAATAAATACATTTTTTTAATAAAAAAAAAACAAAATCCACGTCAGTTTTCTGTTAAGAGTTAACGGAAAAATGGATGGAGGGACTAAAATGAAACAAAATCCAAACCTCAGGAACTAAATTGTCGAGTTTGAAAACTCAGGGACTAGAATGAAATCTAACCCGAACCTCAGGGACCAAAAGTGTATTTTCCCTTTTATTATCTATCTTTCAAAATCAGTTTATCATTTTGGGGATAATTTAGGAGGATTTCCCTGGGGAAATTGTGGCAGATGGCTAGAAAAAAAAAAAAAAAAAAAACTCCTTTGTTTTATGGCTAAAATAGTTTCAAATTTGGAGGGACGACTATCGTGAATTAAGAAACAACCAATCGATTATTTTTTCCTTATTTTACCCCTAGTGTATACTGTCATTTACAGCTCTGCCCAACCCAATTACCAATATTCAGTTTTTTTTTAAAAAAATCAACATAAGATTTTTCTAACTGAAAAATCTTAAAGTCACGTGGATTTTCCTCAATATTTGTTAAAAAGAAAAAAAAAGCTAATTTTGTCCTATATTTTCTCAATTCCAATAAAACTTAATTTTCTACATTCTCACTCATCTCTTCACGATCAATGTTCCAATCTTTGCATGGAACCTAGAATTCAAATCTCATTTCCACTGTCTTTGCACCACCAGAATTTTTTCAATAATGGCTTCCATCGAATTTTGATTCTATACTATAGCATTTGGGCACCAATTCTGTCACATACTTTATTAGACTTGATGTTCTAAAGAAAATTTCACAGATCTACCTTTTCAATAATGGTGAAAACAATTTTCGGATTATAAGCTTTTCTAAGAACAAAAAGATCTTGCCTGGATGCTCGCTAGGGTATGTAACGGGATGTACCACGATTGTTGTCTTGTCGTATATGTTGAAAGTGTGGATACTAGTATCCGTAGGGACGGTGCAAGCCTGAATTCGACAGAAAATACAAACAACAAAGGAAGGATTTCAACAAGTGTACATATCAACACAATAAAGTGACTGTGCTATCAGTGTGGATGTGGAGTCTGTAGATACCAATATACATAGAGGCAGTGTTGGACCAAATCCACTAAGGAGAATGCAACTCAGATAAGGATAGTGTTGGTTTTCTTAATTCAGTGGTAAGTGATGTTCTTACACCAATAGATATGGTTAAATACAAATTGTAGTTGAGTAATAGTCCTTACAATTTTGAACTATGTCAACAAGGTCCTCAAAGACAAAGCTTTTCATTTTACATTGTCAAGGAAGATGGCGAGATCCGGGTAATGTTTAATTATTGTATTAACTAATTGTATATACTCTTGTATACATAGAGATTCTAGAGATATATATCATTATCCATATGCGAAAGATTGATAGGGTTATTGAGTATGATGCTTGTTTGTATGTACACATATGTTATAGGTAATTTTGGATCACTCCGATGTACAAGGAGCTGACAAGGACAACCCGATGCGAGCCCAAAAATAGGACCGAAGGATGGACCCTGGAGACGAAATAGGCCAAGGGGTCAGGCCAAGGCCGAAGGGATCGGCCTTTTGGCCCGACCCCATGGTCGAGTTCCTCCGACTCCATTCGGTCCCTACTGCCTTTGACCGCCCCGGTTCCGCCTGGTTCGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGCATGAGAAGGTATTTAAACCCCTCTTCGCCATTGAAGAAGGGATCCCGAACTCTATTCTCTACTCTCTTCTCTTGCTCTCTTGCTCTTTTGCTCTCCTCCTTCCGTTTTTTGACTTAAGCATCGGAGGCGGTGTGGCAAGCACCACACTGGTGTGCAGGTTTTCTGTCTTGCAGGCCATGTCTTCCCCTATCACAAACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGTGAGTTTCTCCCGACCAAATTTGACCATCAACAGCACATATATAAATATATGTTGTTGTACTTATTGTGTTTTTTTACATAATTACTTATGTGCTTCTATGTATGTGCTATTATACACTCACAAGTATTGTGTGATTTTGTACGAAAAAATGTATATTGATAGTTTAACATAAGTTTTTTTTTTAGGAATAAGAATTTAGATTTTTTTTTGTTTAAATGATGCTAATTACGGTTTTAGTTTAATGCAAGGTTGTTAAATCTTGTTGATGTCAAATTCGGTTTCTCCCCTCCTTAGAATGCTCCTTATTTTTTGGTTTGTTTCTCCCCTCCTTAAAATGCTCCTTCTTTTTTTTTTTTTTGGTTAGACTTTGGTTAAAATTAGATTTTCTTTCCTCTTGTACGTTGCATTTTTCTTTCCAAAAAGTGGTTAGGGGTAATTTCGTTTATTTTAATTAGAAATTTAATAATTAAAATCACGTTTAGTAATTTATTTAATTTATAAACATGTTTAGCCATTTTTCAAATTCCTCCTATTAAATCTAGTCTTGTCCCATTTCCTAGTGCGTTTGAACGTAGGCGGGCTATAAGGCCCAATAGAGCCAGAGGCCCATCTAATTTTCATGGGTCAACAAATAGCCCAAATACATAATTTATGTCGTTCAAATTCAACTACAGTAGCTTCTGGCAGACATTTGTTGGGGAGGCTTCTTGCTTTTTTCGTCTTAGGGTTTTCGATGTCGATCTCCGCAGCTCTCATCTCTCGGCGATGGCGAAGAACAGGAATAAGAAGAAGCGAAGTGGGGCTATGTCTATGGACATAACCGAAAATACCGTTAATGAGCTCCCTCAAGGTACATTTGAGTTATCTGAAAAGGGATTAAACAGAATAGTATCAGATAGAATGAAAACTGTATCCTCCAGATGTTTTTACTTGTCGTTCCTTTTTCATTGGTTCTCTTTAAGATGTTTTAGAACTCTTCTTTGTTTTAATATTTGTTTTCTTTTGAGAAGTTTTGAGGTTAAACTAACTTATTTTCCACTTGAATCTATAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCCCAATCTGTAA

mRNA sequence

ATGTTGGGACCCGTCCTCACGCTACCATCTCCCTCTCTTTCTCTCAGAATCGAAGGGGACCCTTCGATTCCGAGAGAAAGTGGCGGTGAACGAACTGCGAACAAGCAACGAATTGACAGAGAACGGGTGACGAACTTCAGTTTCAGAGGTCCTCAAAGACAAAGCTTTTCATTTTACATTGTCAAGGAAGATGGCGAGATCCGGACATTTGTTGGGGAGGCTTCTTGCTTTTTTCGTCTTAGGGTTTTCGATGTCGATCTCCGCAGCTCTCATCTCTCGGCGATGGCGAAGAACAGGAATAAGAAGAAGCGAAGTGGGGCTATGTCTATGGACATAACCGAAAATACCGTTAATGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCCCAATCTGTAA

Coding sequence (CDS)

ATGTTGGGACCCGTCCTCACGCTACCATCTCCCTCTCTTTCTCTCAGAATCGAAGGGGACCCTTCGATTCCGAGAGAAAGTGGCGGTGAACGAACTGCGAACAAGCAACGAATTGACAGAGAACGGGTGACGAACTTCAGTTTCAGAGGTCCTCAAAGACAAAGCTTTTCATTTTACATTGTCAAGGAAGATGGCGAGATCCGGACATTTGTTGGGGAGGCTTCTTGCTTTTTTCGTCTTAGGGTTTTCGATGTCGATCTCCGCAGCTCTCATCTCTCGGCGATGGCGAAGAACAGGAATAAGAAGAAGCGAAGTGGGGCTATGTCTATGGACATAACCGAAAATACCGTTAATGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCCCAATCTGTAA

Protein sequence

MLGPVLTLPSPSLSLRIEGDPSIPRESGGERTANKQRIDRERVTNFSFRGPQRQSFSFYIVKEDGEIRTFVGEASCFFRLRVFDVDLRSSHLSAMAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNL

Homology

[Close]

BLAST of Lcy11g011930 vs. ExPASy TrEMBL
Match: A0A6J1EMH0 (uncharacterized protein LOC111435867 OS=Cucurbita moschata OX=3662 GN=LOC111435867 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.1e-12
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 95  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNL 142
           MAKN+NKKKRSGA+SMDITENT  ELPQAMDVSESAVHKPASGA NL
Sbjct: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNL 47

[Close]

BLAST of Lcy11g011930 vs. ExPASy TrEMBL
Match: A0A6J1J4F8 (uncharacterized protein LOC111483316 OS=Cucurbita maxima OX=3661 GN=LOC111483316 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 95  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNL 142
           MAKN+N KKRSGA+SMDITENT +ELPQAMDVSESAVHKPASGA NL
Sbjct: 1   MAKNKN-KKRSGAISMDITENTAHELPQAMDVSESAVHKPASGALNL 46

[Close]

BLAST of Lcy11g011930 vs. ExPASy TrEMBL
Match: A0A1S3BUB2 (uncharacterized protein LOC103493362 OS=Cucumis melo OX=3656 GN=LOC103493362 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 95  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNL 142
           MAKNRNKKKR GA+SMD+TEN+V+ELPQAMDVS S VHKPASGA +L
Sbjct: 1   MAKNRNKKKRGGAVSMDVTENSVHELPQAMDVSASTVHKPASGALDL 47

[Close]

BLAST of Lcy11g011930 vs. ExPASy TrEMBL
Match: A0A6A6MLZ5 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_025020 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.2e-08
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 95  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPN 141
           MAKNRNKKK++GA+SMDITE TV+++PQAMD SES V K ASG PN
Sbjct: 1   MAKNRNKKKKNGAVSMDITEPTVSDVPQAMDTSESVVQKSASGFPN 46

[Close]

BLAST of Lcy11g011930 vs. ExPASy TrEMBL
Match: A0A6P4AMY3 (uncharacterized protein LOC107430330 OS=Ziziphus jujuba OX=326968 GN=LOC107430330 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.5e-07
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 95  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVH-KPASGAP 140
           MAKNRNKKKR+G +SMDITE  V+ELPQAMD SES  H  PA+GAP
Sbjct: 1   MAKNRNKKKRNGVLSMDITEAPVSELPQAMDTSESGAHNNPAAGAP 46

[Close]

BLAST of Lcy11g011930 vs. NCBI nr
Match: KAG6577394.1 (Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-15
Identity = 49/60 (81.67%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 82  VFDVDLRSSHLSAMAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNL 141
           VF V L  ++LSAMAKN+NKKKRSGA+SMDITENT  ELPQAMDVSESAVHKPASGA NL
Sbjct: 265 VFVVSLLGAYLSAMAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNL 324

[Close]

BLAST of Lcy11g011930 vs. NCBI nr
Match: XP_022929206.1 (uncharacterized protein LOC111435867 [Cucurbita moschata] >KAG7015471.1 hypothetical protein SDJN02_23107 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.0 bits (201), Expect = 4.4e-12
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 95  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNL 142
           MAKN+NKKKRSGA+SMDITENT  ELPQAMDVSESAVHKPASGA NL
Sbjct: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNL 47

[Close]

BLAST of Lcy11g011930 vs. NCBI nr
Match: XP_038903593.1 (uncharacterized protein LOC120090147 [Benincasa hispida])

HSP 1 Score: 81.3 bits (199), Expect = 7.6e-12
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 95  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNL 142
           MAKNRNKKKRSG +SMD+TENTV+ELPQAMDVSESAVHKP SGA NL
Sbjct: 1   MAKNRNKKKRSGPVSMDVTENTVHELPQAMDVSESAVHKPTSGALNL 47

[Close]

BLAST of Lcy11g011930 vs. NCBI nr
Match: XP_023538255.1 (uncharacterized protein LOC111799087 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.8 bits (190), Expect = 8.4e-11
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 95  MAKNRNKKKR-SGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNL 142
           MAKNRNKKK+ SGA+SMDITEN+V+ELPQAMDVSESAVHKPASGA NL
Sbjct: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVSESAVHKPASGALNL 48

[Close]

BLAST of Lcy11g011930 vs. NCBI nr
Match: XP_022985277.1 (uncharacterized protein LOC111483316 [Cucurbita maxima])

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-10
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 95  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNL 142
           MAKN+N KKRSGA+SMDITENT +ELPQAMDVSESAVHKPASGA NL
Sbjct: 1   MAKNKN-KKRSGAISMDITENTAHELPQAMDVSESAVHKPASGALNL 46

The following BLAST results are available for this feature:

BLAST of Lcy11g011930 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g011930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EMH0	2.1e-12	89.36	uncharacterized protein LOC111435867 OS=Cucurbita moschata OX=3662 GN=LOC1114358...	[more]
A0A6J1J4F8	1.5e-10	87.23	uncharacterized protein LOC111483316 OS=Cucurbita maxima OX=3661 GN=LOC111483316...	[more]
A0A1S3BUB2	1.5e-10	80.85	uncharacterized protein LOC103493362 OS=Cucumis melo OX=3656 GN=LOC103493362 PE=...	[more]
A0A6A6MLZ5	4.2e-08	73.91	Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_025020 PE=4 SV=1	[more]
A0A6P4AMY3	3.5e-07	73.91	uncharacterized protein LOC107430330 OS=Ziziphus jujuba OX=326968 GN=LOC10743033...	[more]

BLAST of Lcy11g011930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577394.1	2.5e-15	81.67	Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperm...	[more]
XP_022929206.1	4.4e-12	89.36	uncharacterized protein LOC111435867 [Cucurbita moschata] >KAG7015471.1 hypothet...	[more]
XP_038903593.1	7.6e-12	87.23	uncharacterized protein LOC120090147 [Benincasa hispida]	[more]
XP_023538255.1	8.4e-11	87.50	uncharacterized protein LOC111799087 [Cucurbita pepo subsp. pepo]	[more]
XP_022985277.1	3.2e-10	87.23	uncharacterized protein LOC111483316 [Cucurbita maxima]	[more]

BLAST of Lcy11g011930 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g011930.1	Lcy11g011930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017004	cytochrome complex assembly
cellular_component	GO:0016021	integral component of membrane