Lcy11g011910 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g011910
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Protein RRP5
Location	Chr11: 14859649 .. 14861573 (-)
RNA-Seq Expression	Lcy11g011910
Synteny	Lcy11g011910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTCAAATTCAACTACAGTAGCTTCTGGCAGACATTTGTTGGGGAGGCTTCTTGCTTTTTTCGTCTTAGGGTTTTCGATGTCGATCTCCGCAGCTCTCATCTCTCGGCGATGGCGAAGAACAGGAATAAGAAGAAGCGAAGTGGGGCTATGTCTATGGACATAACCGAAAATACCGTTAATGAGCTCCCTCAAGGTACATTTGAGTTATCTGAAAAGGGATTAAACAGAATAGTATCAGATAGAATGAAAACTGTATCCTCCAGATGTTTTTACTTGTCGTTCCTTTTTCATTGGTTCTCTTTAAGATGTTTTAGAACTCTTCTTTGTTTTAATATTTGTTTTCTTTTGAGAAGTTTTGAGGTTAAACTAACTTATTTTCCACTTGAATCTATAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCCCAATCTGTAAGCTTCCACCTGGGAATTATGGTTAATTTTTTAATTTTATGGTTTGGGACATAGTTCCAAGCCAATTCATTGTGCGCTTTTGCTTTTGCTTTTGTTTTTTTTTTTTTTTTTTTGTTTTTGTTACAATTCTTGTGTTATCAGTTACCGACTTTAGATTCATTGGCTTTGTTCAATTTGTTGTGTATAAAAAACAGTTAGATTGGGATATCATTATCTCACATGACTAAGCCTTTATCCCAAATTTGTTCATTTTGGTATGAGGCTGAGAAAATTAGGGCAAAAATTATAATGGACATAACTTTAGATTAGAGTAAATTGAGCATTGTATGTATTTATGATCTTACCACAAAAGGTGAACTAACTCCAAGGATTTTTTTTTTCATATTTAGCCATATTACTGTTGATTTTATAAGTGTATTTAGTGGGTCACATATAAGTTTAAGTGCTAGTTACATGGCTAAAAATTGGTGACAACAGTGCGAGAAATATTTCTTGAAGGAGGTAAATGAGGAAAGACTATCAATGCTCTATCTTCATAATCTGTGTTCAACTTTTTTAATTGTGAGAAAAGCATCTTCTAATCGGAAATTCATTGGAATTCATTGGAAATTCATAGCATCTTGATAAATTATGCCTTTCTTCTCACCAATTGTGTATGTTTTTTACCTGAGTGTAGATTGTTTCTCATTTATTATATTTTGAAATGGCACCATGATAAATATTATACACAATAGAGGAGAAGTACTTAGCTCTTGTATTCCTTCAGGAACATTTCATTTATTACTGTAGTAAGAAGCATATTATGCACCTCTCTTATTCGTTTCTAGTCACTTGAACTTATCTATAAAGGCAAAAATAAAACCAGAAAAGAATATCAAGTGGCAACAGTAAATCATAAATGGAAGGAGTGACAAAACTTTCCTATTACCTCTGAACGCCTGCTATTATCAAGTGCCCAATCTTTTCTTATTCGTTTCCTATTATCAAGTGCCCAATCTTTATCTTTCCTGTATTGGTAACATGTCAAATGGTCCGAGAGCTTCACCTCTGAACGCCTGCTATATTGGAATTTGATCTAGAATTTACTGAATCCCAGGCATTGCCTCTGGAGATGGTTGAATAGTAATATTATTCAAATAAGAAATTTTCTGGGGTTTGATTGTCTTTGTCTCTCAATCTCCCTTTCGAATGCTCGCGAATCCATTGTATAATGTTAGTTGCTTTACTAAATTTGGTTTTTACTTAATTCTAAGCTGCCTTCTTTCTGTTTCACCCACAACTTCTGATCATTACTCTTTGTTTGACAGAAAGTTGAAAAAGAGAAGACCAATGAAGCGATCAAAGAATGTTAGGAATACAAAAGCCATGGCGAAGGCCATATCCAAGGGCGAGCAGACAACCGAGAAAATATTGAAAAATCAGAGCAAAATTATCAGAATACAATCTGCAAAAACATTGTATGAATGA

mRNA sequence

ATGTCGTTCAAATTCAACTACAGTAGCTTCTGGCAGACATTTGTTGGGGAGGCTTCTTGCTTTTTTCGTCTTAGGGTTTTCGATGTCGATCTCCGCAGCTCTCATCTCTCGGCGATGGCGAAGAACAGGAATAAGAAGAAGCGAAGTGGGGCTATGTCTATGGACATAACCGAAAATACCGTTAATGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCCCAATCTAAAGTTGAAAAAGAGAAGACCAATGAAGCGATCAAAGAATGTTAGGAATACAAAAGCCATGGCGAAGGCCATATCCAAGGGCGAGCAGACAACCGAGAAAATATTGAAAAATCAGAGCAAAATTATCAGAATACAATCTGCAAAAACATTGTATGAATGA

Coding sequence (CDS)

ATGTCGTTCAAATTCAACTACAGTAGCTTCTGGCAGACATTTGTTGGGGAGGCTTCTTGCTTTTTTCGTCTTAGGGTTTTCGATGTCGATCTCCGCAGCTCTCATCTCTCGGCGATGGCGAAGAACAGGAATAAGAAGAAGCGAAGTGGGGCTATGTCTATGGACATAACCGAAAATACCGTTAATGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCCCAATCTAAAGTTGAAAAAGAGAAGACCAATGAAGCGATCAAAGAATGTTAGGAATACAAAAGCCATGGCGAAGGCCATATCCAAGGGCGAGCAGACAACCGAGAAAATATTGAAAAATCAGAGCAAAATTATCAGAATACAATCTGCAAAAACATTGTATGAATGA

Protein sequence

MSFKFNYSSFWQTFVGEASCFFRLRVFDVDLRSSHLSAMAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLKLKKRRPMKRSKNVRNTKAMAKAISKGEQTTEKILKNQSKIIRIQSAKTLYE

Homology

[Close]

BLAST of Lcy11g011910 vs. ExPASy TrEMBL
Match: A0A6J1EMH0 (uncharacterized protein LOC111435867 OS=Cucurbita moschata OX=3662 GN=LOC111435867 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 8.1e-33
Identity = 84/99 (84.85%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 39  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLKLKKRRPMKRSKN 98
           MAKN+NKKKRSGA+SMDITENT  ELPQAMDVSESAVHKPASGA NLKLKK RPMKRSKN
Sbjct: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60

Query: 99  VRNTKAMAKAISKGEQTTEKILKNQSKIIRIQSAKTLYE 138
           VR T A AKAISK EQ+ EKILKNQSK  RI SAKTLYE
Sbjct: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 99

[Close]

BLAST of Lcy11g011910 vs. ExPASy TrEMBL
Match: A0A1S3BUB2 (uncharacterized protein LOC103493362 OS=Cucumis melo OX=3656 GN=LOC103493362 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.4e-32
Identity = 82/99 (82.83%), Postives = 89/99 (89.90%), Query Frame = 0


Query: 39  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLKLKKRRPMKRSKN 98
           MAKNRNKKKR GA+SMD+TEN+V+ELPQAMDVS S VHKPASGA +LKLKK RPMKRSKN
Sbjct: 1   MAKNRNKKKRGGAVSMDVTENSVHELPQAMDVSASTVHKPASGALDLKLKKGRPMKRSKN 60

Query: 99  VRNTKAMAKAISKGEQTTEKILKNQSKIIRIQSAKTLYE 138
           VR TKA+AKAISK EQ+ EKILKNQSK  RIQSAKTLYE
Sbjct: 61  VRKTKAIAKAISKSEQSMEKILKNQSKTTRIQSAKTLYE 99

[Close]

BLAST of Lcy11g011910 vs. ExPASy TrEMBL
Match: A0A6J1J4F8 (uncharacterized protein LOC111483316 OS=Cucurbita maxima OX=3661 GN=LOC111483316 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 4.5e-31
Identity = 83/99 (83.84%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 39  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLKLKKRRPMKRSKN 98
           MAKN+N KKRSGA+SMDITENT +ELPQAMDVSESAVHKPASGA NLKLKK RPMKRSKN
Sbjct: 1   MAKNKN-KKRSGAISMDITENTAHELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60

Query: 99  VRNTKAMAKAISKGEQTTEKILKNQSKIIRIQSAKTLYE 138
           VR T A AKAISK EQ+ EKILKNQSK  RI SAKTLYE
Sbjct: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 98

[Close]

BLAST of Lcy11g011910 vs. ExPASy TrEMBL
Match: A0A6A6MLZ5 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_025020 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.8e-25
Identity = 70/99 (70.71%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 39  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLKLKKRRPMKRSKN 98
           MAKNRNKKK++GA+SMDITE TV+++PQAMD SES V K ASG PN K+ K RPMKRSKN
Sbjct: 1   MAKNRNKKKKNGAVSMDITEPTVSDVPQAMDTSESVVQKSASGFPNRKV-KGRPMKRSKN 60

Query: 99  VRNTKAMAKAISKGEQTTEKILKNQSKIIRIQSAKTLYE 138
           VR  KA+AKAISK EQ+ EK+LKN+SK  R QSAK LY+
Sbjct: 61  VRKMKAVAKAISKNEQSVEKVLKNESKTARTQSAKLLYD 98

[Close]

BLAST of Lcy11g011910 vs. ExPASy TrEMBL
Match: A0A6P4AMY3 (uncharacterized protein LOC107430330 OS=Ziziphus jujuba OX=326968 GN=LOC107430330 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.6e-23
Identity = 65/100 (65.00%), Postives = 79/100 (79.00%), Query Frame = 0


Query: 39  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVH-KPASGAPNLKLKKRRPMKRSK 98
           MAKNRNKKKR+G +SMDITE  V+ELPQAMD SES  H  PA+GAP +K+KK +PMKRSK
Sbjct: 1   MAKNRNKKKRNGVLSMDITEAPVSELPQAMDTSESGAHNNPAAGAPAIKVKKGKPMKRSK 60

Query: 99  NVRNTKAMAKAISKGEQTTEKILKNQSKIIRIQSAKTLYE 138
           N R  K++ KAI   E+T EK+LKN+SK +R QSAK LY+
Sbjct: 61  NARKQKSIEKAIGANEKTVEKVLKNESKKLRTQSAKLLYD 100

[Close]

BLAST of Lcy11g011910 vs. NCBI nr
Match: KAG6577394.1 (Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.0 bits (406), Expect = 7.3e-36
Identity = 91/112 (81.25%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 26  VFDVDLRSSHLSAMAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNL 85
           VF V L  ++LSAMAKN+NKKKRSGA+SMDITENT  ELPQAMDVSESAVHKPASGA NL
Sbjct: 265 VFVVSLLGAYLSAMAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNL 324

Query: 86  KLKKRRPMKRSKNVRNTKAMAKAISKGEQTTEKILKNQSKIIRIQSAKTLYE 138
           KLKK RPMKRSKNVR T A AKAISK EQ+ EKILKNQSK  RI SAKTLYE
Sbjct: 325 KLKKGRPMKRSKNVRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 376

[Close]

BLAST of Lcy11g011910 vs. NCBI nr
Match: XP_038903593.1 (uncharacterized protein LOC120090147 [Benincasa hispida])

HSP 1 Score: 155.6 bits (392), Expect = 3.1e-34
Identity = 86/99 (86.87%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 39  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLKLKKRRPMKRSKN 98
           MAKNRNKKKRSG +SMD+TENTV+ELPQAMDVSESAVHKP SGA NLKLKK RPMKRSKN
Sbjct: 1   MAKNRNKKKRSGPVSMDVTENTVHELPQAMDVSESAVHKPTSGALNLKLKKGRPMKRSKN 60

Query: 99  VRNTKAMAKAISKGEQTTEKILKNQSKIIRIQSAKTLYE 138
           VR TKAMAKAISK EQ+TEKILKNQSK  RIQSAK LYE
Sbjct: 61  VRKTKAMAKAISKSEQSTEKILKNQSKTARIQSAKALYE 99

[Close]

BLAST of Lcy11g011910 vs. NCBI nr
Match: XP_022929206.1 (uncharacterized protein LOC111435867 [Cucurbita moschata] >KAG7015471.1 hypothetical protein SDJN02_23107 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.8 bits (377), Expect = 1.7e-32
Identity = 84/99 (84.85%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 39  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLKLKKRRPMKRSKN 98
           MAKN+NKKKRSGA+SMDITENT  ELPQAMDVSESAVHKPASGA NLKLKK RPMKRSKN
Sbjct: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60

Query: 99  VRNTKAMAKAISKGEQTTEKILKNQSKIIRIQSAKTLYE 138
           VR T A AKAISK EQ+ EKILKNQSK  RI SAKTLYE
Sbjct: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 99

[Close]

BLAST of Lcy11g011910 vs. NCBI nr
Match: XP_008452291.1 (PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo])

HSP 1 Score: 148.3 bits (373), Expect = 4.9e-32
Identity = 82/99 (82.83%), Postives = 89/99 (89.90%), Query Frame = 0


Query: 39  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLKLKKRRPMKRSKN 98
           MAKNRNKKKR GA+SMD+TEN+V+ELPQAMDVS S VHKPASGA +LKLKK RPMKRSKN
Sbjct: 1   MAKNRNKKKRGGAVSMDVTENSVHELPQAMDVSASTVHKPASGALDLKLKKGRPMKRSKN 60

Query: 99  VRNTKAMAKAISKGEQTTEKILKNQSKIIRIQSAKTLYE 138
           VR TKA+AKAISK EQ+ EKILKNQSK  RIQSAKTLYE
Sbjct: 61  VRKTKAIAKAISKSEQSMEKILKNQSKTTRIQSAKTLYE 99

[Close]

BLAST of Lcy11g011910 vs. NCBI nr
Match: XP_022985277.1 (uncharacterized protein LOC111483316 [Cucurbita maxima])

HSP 1 Score: 144.1 bits (362), Expect = 9.2e-31
Identity = 83/99 (83.84%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 39  MAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLKLKKRRPMKRSKN 98
           MAKN+N KKRSGA+SMDITENT +ELPQAMDVSESAVHKPASGA NLKLKK RPMKRSKN
Sbjct: 1   MAKNKN-KKRSGAISMDITENTAHELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60

Query: 99  VRNTKAMAKAISKGEQTTEKILKNQSKIIRIQSAKTLYE 138
           VR T A AKAISK EQ+ EKILKNQSK  RI SAKTLYE
Sbjct: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 98

[Close]

BLAST of Lcy11g011910 vs. TAIR 10
Match: AT4G27380.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 1.2e-04
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 39  MAKNRNKKKRSGAMSMDITEN-TVNE-LPQAMDVSESAVHKPASGAPNL-KLKKRRPMKR 98
           M K RNKK R    SMD++E+ +V+E  PQ MD +E+   K AS A +L   +K +PMKR
Sbjct: 1   MTKKRNKKNRDEEASMDVSESQSVSEATPQVMDTTETGDGKLASRARSLMSTRKGKPMKR 60

Query: 99  SKNVRNTKAMAKAISKGEQTTEKI 120
           +K   N KA+A A+   E    K+
Sbjct: 61  TKIAMNMKAVAVAMDTTETGDVKL 84

The following BLAST results are available for this feature:

BLAST of Lcy11g011910 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g011910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EMH0	8.1e-33	84.85	uncharacterized protein LOC111435867 OS=Cucurbita moschata OX=3662 GN=LOC1114358...	[more]
A0A1S3BUB2	2.4e-32	82.83	uncharacterized protein LOC103493362 OS=Cucumis melo OX=3656 GN=LOC103493362 PE=...	[more]
A0A6J1J4F8	4.5e-31	83.84	uncharacterized protein LOC111483316 OS=Cucurbita maxima OX=3661 GN=LOC111483316...	[more]
A0A6A6MLZ5	4.8e-25	70.71	Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_025020 PE=4 SV=1	[more]
A0A6P4AMY3	2.6e-23	65.00	uncharacterized protein LOC107430330 OS=Ziziphus jujuba OX=326968 GN=LOC10743033...	[more]

BLAST of Lcy11g011910 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577394.1	7.3e-36	81.25	Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperm...	[more]
XP_038903593.1	3.1e-34	86.87	uncharacterized protein LOC120090147 [Benincasa hispida]	[more]
XP_022929206.1	1.7e-32	84.85	uncharacterized protein LOC111435867 [Cucurbita moschata] >KAG7015471.1 hypothet...	[more]
XP_008452291.1	4.9e-32	82.83	PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo]	[more]
XP_022985277.1	9.2e-31	83.84	uncharacterized protein LOC111483316 [Cucurbita maxima]	[more]

BLAST of Lcy11g011910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27380.1	1.2e-04	42.86	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36385	OS07G0562900 PROTEIN	coord: 39..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g011910.1	Lcy11g011910.1	mRNA