Lcy11g011660 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g011660
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ABC transporter G family member 9-like
Location	Chr11: 14281255 .. 14281629 (+)
RNA-Seq Expression	Lcy11g011660
Synteny	Lcy11g011660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTGCTCTACTTCTCAACAATCTATTGGGGTATCTTCTCTTCTATTTCAAGCCATTAGCGCCCTCCCAAAAGAAAGAATGATGCTTGAAAAAGAAAGATCCTTAGGAATGTACAGGCTCTCATCGTACTTCATCTTAAGGTCCACAAGCAAGCCTCCCAGTGGAGCTCGGTCTTTCCACCATTTTCATCTTCATAATCTATTGGATGGCGAGCTTGAAACGCTTCACCACAAGCTTCTTTGCCACTCTATTCTCTCAACTCCTCAGCGTTTTAGTGTCCCAAAGGCTCTAGCTTGGCCGTTGGCAGCCTTGTTTTGGACCAAAGTTCAGCCACCATACTTGGTTCAGTCATCATGCTTTATTTCCTTGTAA

mRNA sequence

ATGGGCTGCTCTACTTCTCAACAATCTATTGGGGTATCTTCTCTTCTATTTCAAGCCATTAGCGCCCTCCCAAAAGAAAGAATGATGCTTGAAAAAGAAAGATCCTTAGGAATGTACAGGCTCTCATCGTACTTCATCTTAAGGTCCACAAGCAAGCCTCCCAGTGGAGCTCGGTCTTTCCACCATTTTCATCTTCATAATCTATTGGATGGCGAGCTTGAAACGCTTCACCACAAGCTTCTTTGCCACTCTATTCTCTCAACTCCTCAGCGTTTTAGTGTCCCAAAGGCTCTAGCTTGGCCGTTGGCAGCCTTGTTTTGGACCAAAGTTCAGCCACCATACTTGGTTCAGTCATCATGCTTTATTTCCTTGTAA

Coding sequence (CDS)

ATGGGCTGCTCTACTTCTCAACAATCTATTGGGGTATCTTCTCTTCTATTTCAAGCCATTAGCGCCCTCCCAAAAGAAAGAATGATGCTTGAAAAAGAAAGATCCTTAGGAATGTACAGGCTCTCATCGTACTTCATCTTAAGGTCCACAAGCAAGCCTCCCAGTGGAGCTCGGTCTTTCCACCATTTTCATCTTCATAATCTATTGGATGGCGAGCTTGAAACGCTTCACCACAAGCTTCTTTGCCACTCTATTCTCTCAACTCCTCAGCGTTTTAGTGTCCCAAAGGCTCTAGCTTGGCCGTTGGCAGCCTTGTTTTGGACCAAAGTTCAGCCACCATACTTGGTTCAGTCATCATGCTTTATTTCCTTGTAA

Protein sequence

MGCSTSQQSIGVSSLLFQAISALPKERMMLEKERSLGMYRLSSYFILRSTSKPPSGARSFHHFHLHNLLDGELETLHHKLLCHSILSTPQRFSVPKALAWPLAALFWTKVQPPYLVQSSCFISL

Homology

[Close]

BLAST of Lcy11g011660 vs. ExPASy Swiss-Prot
Match: Q93YS4 (ABC transporter G family member 22 OS=Arabidopsis thaliana OX=3702 GN=ABCG22 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-04
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 16  LFQAISALPKERMMLEKERSLGMYRLSSYFILRSTSKPP 55
           +F AI A P+ER ML KER+  MYRLS+YF+ R+TS  P
Sbjct: 565 VFTAIFAFPQERAMLNKERAADMYRLSAYFLARTTSDLP 603

[Close]

BLAST of Lcy11g011660 vs. ExPASy Swiss-Prot
Match: Q9FT51 (ABC transporter G family member 27 OS=Arabidopsis thaliana OX=3702 GN=ABCG27 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.1e-04
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 16  LFQAISALPKERMMLEKERSLGMYRLSSYFILRSTSKPP 55
           +F AI   P+ER ML KER   MYRLS+YF+ R+TS  P
Sbjct: 549 VFTAIFTFPQERAMLSKERESNMYRLSAYFVARTTSDLP 587

[Close]

BLAST of Lcy11g011660 vs. ExPASy Swiss-Prot
Match: Q9SZR9 (ABC transporter G family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCG9 PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 3.1e-04
Identity = 23/39 (58.97%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 16  LFQAISALPKERMMLEKERSLGMYRLSSYFILRSTSKPP 55
           LFQ I   P+ER ML+KERS GMYRLS YF+ R     P
Sbjct: 433 LFQQIFTFPQERAMLQKERSSGMYRLSPYFLSRVVGDLP 471

[Close]

BLAST of Lcy11g011660 vs. ExPASy Swiss-Prot
Match: Q7XA72 (ABC transporter G family member 21 OS=Arabidopsis thaliana OX=3702 GN=ABCG21 PE=2 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 5.3e-04
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 16  LFQAISALPKERMMLEKERSLGMYRLSSYFILRSTSKPP 55
           LF AI   P+ER ML KERS G+YRLSSY+I R+    P
Sbjct: 475 LFNAIFTFPQERPMLIKERSSGIYRLSSYYIARTVGDLP 513

[Close]

BLAST of Lcy11g011660 vs. ExPASy Swiss-Prot
Match: Q9C6W5 (ABC transporter G family member 14 OS=Arabidopsis thaliana OX=3702 GN=ABCG14 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 9.0e-04
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 16  LFQAISALPKERMMLEKERSLGMYRLSSYFILRSTSKPP 55
           L+ A+   P+E+ ML KERS GMYRLSSYF+ R+    P
Sbjct: 448 LYNAVFTFPQEKRMLIKERSSGMYRLSSYFMARNVGDLP 486

[Close]

BLAST of Lcy11g011660 vs. ExPASy TrEMBL
Match: A0A5A7V4M5 (ABC transporter G family member 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005910 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.5e-05
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 16  LFQAISALPKERMMLEKERSLGMYRLSSYFILRSTSKPP 55
           L QAI+  PKERM+LEKERS GMYRLSSYFI R+T+  P
Sbjct: 410 LLQAINTFPKERMILEKERSSGMYRLSSYFISRTTTDLP 448

[Close]

BLAST of Lcy11g011660 vs. ExPASy TrEMBL
Match: A0A5D3BVZ6 (ABC transporter G family member 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G001470 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.5e-05
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 16  LFQAISALPKERMMLEKERSLGMYRLSSYFILRSTSKPP 55
           L QAI+  PKERM+LEKERS GMYRLSSYFI R+T+  P
Sbjct: 410 LLQAINTFPKERMILEKERSSGMYRLSSYFISRTTTDLP 448

[Close]

BLAST of Lcy11g011660 vs. ExPASy TrEMBL
Match: A0A1S3BUF9 (ABC transporter G family member 9-like OS=Cucumis melo OX=3656 GN=LOC103493419 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.5e-05
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 16  LFQAISALPKERMMLEKERSLGMYRLSSYFILRSTSKPP 55
           L QAI+  PKERM+LEKERS GMYRLSSYFI R+T+  P
Sbjct: 384 LLQAINTFPKERMILEKERSSGMYRLSSYFISRTTTDLP 422

[Close]

BLAST of Lcy11g011660 vs. ExPASy TrEMBL
Match: A0A5C7GS18 (Alpha-galactosidase OS=Acer yangbiense OX=1000413 GN=EZV62_026634 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 16  LFQAISALPKERMMLEKERSLGMYRLSSYFILRSTSKPP 55
           LFQAI   P+ER+MLEKERS GMYRLSSYF+ R+T+  P
Sbjct: 778 LFQAIFTFPRERLMLEKERSSGMYRLSSYFMARTTADLP 816

[Close]

BLAST of Lcy11g011660 vs. ExPASy TrEMBL
Match: A0A0A0L374 (ABC transporter domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G101820 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 16  LFQAISALPKERMMLEKERSLGMYRLSSYFILRSTSKPP 55
           L QAI   PKERM+LEKERS GMYRLSSYF+ R+T+  P
Sbjct: 410 LLQAIGTFPKERMILEKERSSGMYRLSSYFVSRTTTDLP 448

[Close]

BLAST of Lcy11g011660 vs. NCBI nr
Match: KAA0060689.1 (ABC transporter G family member 9-like [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-04
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 16  LFQAISALPKERMMLEKERSLGMYRLSSYFILRSTSKPP 55
           L QAI+  PKERM+LEKERS GMYRLSSYFI R+T+  P
Sbjct: 410 LLQAINTFPKERMILEKERSSGMYRLSSYFISRTTTDLP 448

[Close]

BLAST of Lcy11g011660 vs. NCBI nr
Match: TYK03304.1 (ABC transporter G family member 9-like [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-04
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 16  LFQAISALPKERMMLEKERSLGMYRLSSYFILRSTSKPP 55
           L QAI+  PKERM+LEKERS GMYRLSSYFI R+T+  P
Sbjct: 410 LLQAINTFPKERMILEKERSSGMYRLSSYFISRTTTDLP 448

[Close]

BLAST of Lcy11g011660 vs. NCBI nr
Match: XP_008452359.2 (PREDICTED: ABC transporter G family member 9-like [Cucumis melo])

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-04
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 16  LFQAISALPKERMMLEKERSLGMYRLSSYFILRSTSKPP 55
           L QAI+  PKERM+LEKERS GMYRLSSYFI R+T+  P
Sbjct: 384 LLQAINTFPKERMILEKERSSGMYRLSSYFISRTTTDLP 422

[Close]

BLAST of Lcy11g011660 vs. NCBI nr
Match: XP_038906339.1 (ABC transporter G family member 9 [Benincasa hispida])

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-04
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 16  LFQAISALPKERMMLEKERSLGMYRLSSYFILRSTSKPP 55
           L QAI   PKERM+LEKER+ GMYRLSSYFI R+TS  P
Sbjct: 411 LLQAIGTFPKERMILEKERASGMYRLSSYFISRTTSDLP 449

[Close]

BLAST of Lcy11g011660 vs. NCBI nr
Match: TXG47340.1 (hypothetical protein EZV62_026634 [Acer yangbiense])

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-04
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 16  LFQAISALPKERMMLEKERSLGMYRLSSYFILRSTSKPP 55
           LFQAI   P+ER+MLEKERS GMYRLSSYF+ R+T+  P
Sbjct: 778 LFQAIFTFPRERLMLEKERSSGMYRLSSYFMARTTADLP 816

[Close]

BLAST of Lcy11g011660 vs. TAIR 10
Match: AT5G06530.2 (ABC-2 type transporter family protein )

HSP 1 Score: 47.8 bits (112), Expect = 7.6e-06
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 16  LFQAISALPKERMMLEKERSLGMYRLSSYFILRSTSKPP 55
           +F AI A P+ER ML KER+  MYRLS+YF+ R+TS  P
Sbjct: 565 VFTAIFAFPQERAMLNKERAADMYRLSAYFLARTTSDLP 603

[Close]

BLAST of Lcy11g011660 vs. TAIR 10
Match: AT5G06530.1 (ABC-2 type transporter family protein )

HSP 1 Score: 47.8 bits (112), Expect = 7.6e-06
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 16  LFQAISALPKERMMLEKERSLGMYRLSSYFILRSTSKPP 55
           +F AI A P+ER ML KER+  MYRLS+YF+ R+TS  P
Sbjct: 565 VFTAIFAFPQERAMLNKERAADMYRLSAYFLARTTSDLP 603

[Close]

BLAST of Lcy11g011660 vs. TAIR 10
Match: AT5G06530.3 (ABC-2 type transporter family protein )

HSP 1 Score: 47.8 bits (112), Expect = 7.6e-06
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 16  LFQAISALPKERMMLEKERSLGMYRLSSYFILRSTSKPP 55
           +F AI A P+ER ML KER+  MYRLS+YF+ R+TS  P
Sbjct: 565 VFTAIFAFPQERAMLNKERAADMYRLSAYFLARTTSDLP 603

[Close]

BLAST of Lcy11g011660 vs. TAIR 10
Match: AT3G52310.1 (ABC-2 type transporter family protein )

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-05
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 16  LFQAISALPKERMMLEKERSLGMYRLSSYFILRSTSKPP 55
           +F AI   P+ER ML KER   MYRLS+YF+ R+TS  P
Sbjct: 596 VFTAIFTFPQERAMLSKERESNMYRLSAYFVARTTSDLP 634

[Close]

BLAST of Lcy11g011660 vs. TAIR 10
Match: AT4G27420.1 (ABC-2 type transporter family protein )

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-05
Identity = 23/39 (58.97%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 16  LFQAISALPKERMMLEKERSLGMYRLSSYFILRSTSKPP 55
           LFQ I   P+ER ML+KERS GMYRLS YF+ R     P
Sbjct: 433 LFQQIFTFPQERAMLQKERSSGMYRLSPYFLSRVVGDLP 471

The following BLAST results are available for this feature:

BLAST of Lcy11g011660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93YS4	1.1e-04	58.97	ABC transporter G family member 22 OS=Arabidopsis thaliana OX=3702 GN=ABCG22 PE=...	[more]
Q9FT51	3.1e-04	56.41	ABC transporter G family member 27 OS=Arabidopsis thaliana OX=3702 GN=ABCG27 PE=...	[more]
Q9SZR9	3.1e-04	58.97	ABC transporter G family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCG9 PE=1 ...	[more]
Q7XA72	5.3e-04	58.97	ABC transporter G family member 21 OS=Arabidopsis thaliana OX=3702 GN=ABCG21 PE=...	[more]
Q9C6W5	9.0e-04	53.85	ABC transporter G family member 14 OS=Arabidopsis thaliana OX=3702 GN=ABCG14 PE=...	[more]

BLAST of Lcy11g011660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V4M5	8.5e-05	71.79	ABC transporter G family member 9-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5D3BVZ6	8.5e-05	71.79	ABC transporter G family member 9-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BUF9	8.5e-05	71.79	ABC transporter G family member 9-like OS=Cucumis melo OX=3656 GN=LOC103493419 P...	[more]
A0A5C7GS18	1.1e-04	69.23	Alpha-galactosidase OS=Acer yangbiense OX=1000413 GN=EZV62_026634 PE=3 SV=1	[more]
A0A0A0L374	1.4e-04	69.23	ABC transporter domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G10...	[more]

BLAST of Lcy11g011660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060689.1	1.8e-04	71.79	ABC transporter G family member 9-like [Cucumis melo var. makuwa]	[more]
TYK03304.1	1.8e-04	71.79	ABC transporter G family member 9-like [Cucumis melo var. makuwa]	[more]
XP_008452359.2	1.8e-04	71.79	PREDICTED: ABC transporter G family member 9-like [Cucumis melo]	[more]
XP_038906339.1	2.3e-04	71.79	ABC transporter G family member 9 [Benincasa hispida]	[more]
TXG47340.1	2.3e-04	69.23	hypothetical protein EZV62_026634 [Acer yangbiense]	[more]

BLAST of Lcy11g011660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06530.2	7.6e-06	58.97	ABC-2 type transporter family protein	[more]
AT5G06530.1	7.6e-06	58.97	ABC-2 type transporter family protein	[more]
AT5G06530.3	7.6e-06	58.97	ABC-2 type transporter family protein	[more]
AT3G52310.1	2.2e-05	56.41	ABC-2 type transporter family protein	[more]
AT4G27420.1	2.2e-05	58.97	ABC-2 type transporter family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g011660.1	Lcy11g011660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0052692	raffinose alpha-galactosidase activity